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Chromosome 10 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_024115 NT_024081 NT_033983 NT_033894 NT_033916 NT_008705 NT_033921 NT_033986
NT_033892 NT_033226 NT_033223 NT_033227 NT_033912 NT_033982 NT_033988 NT_033896
NT_024133 NT_033987 NT_033985 NT_031847 NT_030066 NT_030772 NT_033228 NT_008646
NT_017696 NT_031860 NT_033898 NT_033920 NT_008748 NT_033222 NT_033990 NT_024085
NT_033984 NT_008797 NT_033897 NT_008583 NT_033220 NT_033891 NT_033895 NT_033917
NT_033989 NT_033918 NT_033919 NT_033893 NT_024037 NT_030075 NT_033890 NT_024064
NT_030070 NT_008769 NT_033229 NT_030059 NT_008818 NT_033221 NT_031855 NT_031856
NT_008902 NT_030764 NT_027097 NT_024086 NT_025835 NT_033224 NT_033225 NT_024040
NT_017795 NT_028298


  NT_030059
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_030059AL3593881036165151        
S/G/Y/R/B/O NT_030059AL3553151039222323AFMB050ZC5  10119.701 AL355315
S/G/Y/R/B/O NT_030059AL3553151039222323AFMB050ZC510126.80  1 AL355315
S/G/Y/R/B/O NT_030059AL3589381039250433        
S/G/Y/R/B/O NT_030059AL1392391040691693        
S/G/Y/R/B/O NT_030059AL3553011042284083        
S/G/Y/R/B/O NT_030059AL1392411043638463        
S/G/Y/R/B/O NT_030059AL1392431045686453MFD214  10121.981 AL139243
S/G/Y/R/B/O NT_030059AL3562681046953013        
S/G/Y/R/B/O NT_030059AL3562201048206823        
S/G/Y/R/B/O NT_030059AL3912601049585343        
S/G/Y/R/B/O NT_030059AL3600751051487633AFMB331ZC9  10121.981 AL360075
S/G/Y/R/B/O NT_030059AL3600751051487633AFMB331ZC910129.70  1 AL360075
S/G/Y/R/B/O NT_030059AL5900361051662583        
S/G/Y/R/B/O NT_030059AL3652101053613613        
S/G/Y/R/B/O NT_030059AL4452511053901103        
S/G/Y/R/B/O NT_030059AL3916841055172053AFM126YD6  10121.981 AL391684
S/G/Y/R/B/O NT_030059AL3916841055172053AFM126YD610129.80  1 AL391684
S/G/Y/R/B/O NT_030059AL5135421056823843        
S/G/Y/R/B/O NT_030059AL3537191057270033        
S/G/Y/R/B/O NT_030059AL1333531058481633        
S/G/Y/R/B/O NT_030059AL3921071060072672        
S/G/Y/R/B/O NT_030059AL6274341060982293        
S/G/Y/R/B/O NT_030059AL4418861061505433        
S/G/Y/R/B/O NT_030059AL1389211062844752        
S/G/Y/R/B/O NT_030059AL1398191064941313AFM350WA5  10123.701 AC018783, AL139819
S/G/Y/R/B/O NT_030059AL1398191064941313AFM350WA510131.00  1 AC018783, AL139819
S/G/Y/R/B/O NT_030059AL3597591065906693        
S/G/Y/R/B/O NT_030059AL3917231066616471        
S/G/Y/R/B/O NT_030059AL1333521067648571AFMA132YD9  10124.271 AL133352, AL390720
S/G/Y/R/B/O NT_030059AL1333521067648571AFMA132YD910131.20  1 AL133352, AL390720
S/G/Y/R/B/O NT_030059AL3600011068175633        
S/G/Y/R/B/O NT_030059AL5914081069489783AFM164YD810131.9010125.411 AL591408
S/G/Y/R/B/O NT_030059AL6039831070318823        
S/G/Y/R/B/O NT_030059AL1393391070338763        
S/G/Y/R/B/O NT_030059AL1219291071676833AFM249WC510131.9010125.411 AC006183
S/G/Y/R/B/O NT_030059AL1219291073279013AFMA217YG510131.9010125.411 AC006109, AC006182
S/G/Y/R/B/O NT_030059AL1333551074108443AFMA064ZA510131.9010125.411 AL133355
S/G/Y/R/B/O NT_030059AL3601701075296463        
S/G/Y/R/B/O NT_030059AL1387611075878983        
S/G/Y/R/B/O NT_030059AL3573361077278693        
S/G/Y/R/B/O NT_030059AL1393411077805963        
S/G/Y/R/B/O NT_030059AL1627421080083753AFM205XE1110134.7010127.111 AL162742
S/G/Y/R/B/O NT_030059AL3553781080613023        
S/G/Y/R/B/O NT_030059AL1616461080787943        
S/G/Y/R/B/O NT_030059AL3553501082625273        
S/G/Y/R/B/O NT_030059AL5899421083186013        
S/G/Y/R/B/O NT_030059AL4454921083584033MFD296  10127.111 AL445492
S/G/Y/R/B/O NT_030059AL3589491084956783GATA114H09  10127.111 AC073303, AL358949
S/G/Y/R/B/O NT_030059AL3589491086351253AFM154YC110134.7010124.271 AL358949


  NT_030059 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_030059AL3654491086512423        
S/G/Y/R/B/O NT_030059AL3539001087017583AFMA222ZC510135.2010127.111 AC073997
S/G/Y/R/B/O NT_030059AL5961181088458373        
S/G/Y/R/B/O NT_030059AL4503631089417393        
S/G/Y/R/B/O NT_030059AC0262251090540723        
S/G/Y/R/B/O NT_030059AL5913631092532493        
S/G/Y/R/B/O NT_030059AL4504661093702433AFM177XE310134.7010127.111 AL450466
S/G/Y/R/B/O NT_030059AC0689221094147941        
S/G/Y/R/B/O NT_030059AC0189441095259631        
S/G/Y/R/B/O NT_030059AL5891661095543163        
S/G/Y/R/B/O NT_030059AL3581961096079363        
S/G/Y/R/B/O NT_030059AL3531481098030153MFD249  10127.111AC018944, AC018944, AL353148
S/G/Y/R/B/O NT_030059AL3531481098426173AFM154XH210134.7010127.111AC018944, AC018944, AL353148
S/G/Y/R/B/O NT_030059AL1577101098564683        
S/G/Y/R/B/O NT_030059AC0733691099819343AFMA051WE5  10124.271 AC073369
S/G/Y/R/B/O NT_030059AC0733691099819343AFMA051WE510131.20  1 AC073369
S/G/Y/R/B/O NT_030059AL3598471100303583        
S/G/Y/R/B/O NT_030059AL1333951102165853MFD100A  10128.191 AL133395
S/G/Y/R/B/O NT_030059AL1333951103372503MFD347  10122.841 AL133395
S/G/Y/R/B/O NT_030059AL3573331103541963        
S/G/Y/R/B/O NT_030059AL3562551104392353        
S/G/Y/R/B/O NT_030059AL1600101106005133AFMA205WC910136.3010127.111 AL160010
S/G/Y/R/B/O NT_030059AL3563081107100993        
S/G/Y/R/B/O NT_030059AL3564391108110093        
S/G/Y/R/B/O NT_030059AL3575101109826863AFMC005XH510136.3010128.191 AL357510
S/G/Y/R/B/O NT_030059AC0220241110938413AFM198YH810134.7010127.111 AC013757, AC022024
S/G/Y/R/B/O NT_030059AC0220241111352593AFMA102XE910136.3010128.731 AC013757, AC022024
S/G/Y/R/B/O NT_030059AC0210391112236763UT5027  10127.111 AC013757, AC021039
S/G/Y/R/B/O NT_030059AC0189761113531393        
S/G/Y/R/B/O NT_030059AL1622731114799533        
S/G/Y/R/B/O NT_030059AL3552751115809643        
S/G/Y/R/B/O NT_030059AL4452401116733743        
S/G/Y/R/B/O NT_030059AL3908341118261723        
S/G/Y/R/B/O NT_030059AL3553841119689593AFMC015WD110137.6010128.731 AL161745, AL355384
S/G/Y/R/B/O NT_030059AL3537401121098343        
S/G/Y/R/B/O NT_030059AL5900721122049313        
S/G/Y/R/B/O NT_030059AL3564761123153763        
S/G/Y/R/B/O NT_030059AC0691191124978861        
S/G/Y/R/B/O NT_030059AC0241171125169551        
S/G/Y/R/B/O NT_030059AL7139691125228531        
S/G/Y/R/B/O NT_030059AC0838531125661811        
S/G/Y/R/B/O NT_030059AC0371941125738451        
S/G/Y/R/B/O NT_030059AC0223731125815091        
S/G/Y/R/B/O NT_030059AC0266861125907181        
S/G/Y/R/B/O NT_030059AL6070821125968153        
S/G/Y/R/B/O NT_030059AL1577871126724483        
S/G/Y/R/B/O NT_030059AL1387661128240053GGAA22D12  10128.731AC026686, AC018826, AC025915, AC026686, AL138766
S/G/Y/R/B/O NT_030059AL1577851129018533        
S/G/Y/R/B/O NT_030059AL3553321131035282AFM331XA910137.6010128.731 AC026989, AL355332
S/G/Y/R/B/O NT_030059AL5899481131290333        


  NT_030059 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_030059AL3901231132263013        
S/G/Y/R/B/O NT_030059AL1334161133823943        
S/G/Y/R/B/O NT_030059AL3549511134218433        
S/G/Y/R/B/O NT_030059AL1626131136251723        
S/G/Y/R/B/O NT_030059AL5906281137117543AFM207YC310136.3010128.731 AL590628
S/G/Y/R/B/O NT_030059AL3601821138149183        
S/G/Y/R/B/O NT_030059AL3555121139581743        
S/G/Y/R/B/O NT_030059AL3592601141578593        
S/G/Y/R/B/O NT_030059AL5125081143086043        
S/G/Y/R/B/O NT_030059AL1363681143811273        
S/G/Y/R/B/O NT_030059AL1581631146908752MFD7  10129.811 AL158163
S/G/Y/R/B/O NT_030059AL3558631147198833        
S/G/Y/R/B/O NT_030059AC0210351148700943        
S/G/Y/R/B/O NT_030059AL6708431150196851        
S/G/Y/R/B/O NT_030059AC0687091151931281AFMA273YE110139.2010130.901 AC068709
S/G/Y/R/B/O NT_030059AL3561411152059243        
S/G/Y/R/B/O NT_030059AL3567721152937953        
S/G/Y/R/B/O NT_030059AL1361191154556563        
S/G/Y/R/B/O NT_030059AL3921671155823183AFM078XA910136.3010128.191 AL392167
S/G/Y/R/B/O NT_030059AL3593951157350063        
S/G/Y/R/B/O NT_030059AL3919861157444193        
S/G/Y/R/B/O NT_030059AL1577861160226503GATA83D05  10130.901 AL157786
S/G/Y/R/B/O NT_030059AC0220181160615671        
S/G/Y/R/B/O NT_030059AL5122701162017563        
S/G/Y/R/B/O NT_030059AL1391201162171423        
S/G/Y/R/B/O NT_030059AL1333231163946563AFM274XF910140.2010131.801 AL133323
S/G/Y/R/B/O NT_030059AL1582121164439712        
S/G/Y/R/B/O NT_030059AL4454861166186053MFD175  10130.901 AL445486
S/G/Y/R/B/O NT_030059AL1357921167082743        
S/G/Y/R/B/O NT_030059AL4510841167596543        
S/G/Y/R/B/O NT_030059AL3570421169414693        
S/G/Y/R/B/O NT_030059AL1334821170548173        
S/G/Y/R/B/O NT_030059AL3901971171207323        
S/G/Y/R/B/O NT_030059AL6273951173070811        
S/G/Y/R/B/O NT_030059AL5925461173322712        
S/G/Y/R/B/O NT_030059AL6274291175070473        
S/G/Y/R/B/O NT_030059AL1624071175284653        
S/G/Y/R/B/O NT_030059AL3555431176563983UT730  10138.471 AC005886, AL355543
S/G/Y/R/B/O NT_030059AC0220231178195223        
S/G/Y/R/B/O NT_030059AC0053831179039863AFM240YC710139.2010130.901 AC005383
S/G/Y/R/B/O NT_030059AC0053831179458093AFMA272ZD110141.8010133.271 AC005383
S/G/Y/R/B/O NT_030059 - UT5126  10122.840  
S/G/Y/R/B/O NT_030059 - AFM094TC9  10124.270 AL390720, AL589862
S/G/Y/R/B/O NT_030059 - AFMB055ZB9  10124.271AL133215, AL133215
S/G/Y/R/B/O NT_030059 - FB7F11  10124.271AC019240, AC019240, AC090757, AP001932
S/G/Y/R/B/O NT_030059 - AFM206YB2  10124.271AL138762, AL138762
S/G/Y/R/B/O NT_030059 - AFMB359ZG5  10125.411AL356608, AC009144, AL356608
S/G/Y/R/B/O NT_030059 - AFMB001WB9  10125.411AL391121, AL391121
S/G/Y/R/B/O NT_030059 - GATA64B01  10125.410AL445463, AL445304, AL445463
S/G/Y/R/B/O NT_030059 - AFMA343YG5  10125.411AL358790, AC009144, AL358790


  NT_030059 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_030059 - AFMA301XE1  10125.411AL391121, AL391121