Chromosome 10 - Genetic Maps - Single Contig

Chromosome 10 - Genetic Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_024115	NT_024081	NT_033983	NT_033894	NT_033916	NT_008705	NT_033921	NT_033986
NT_033892	NT_033226	NT_033223	NT_033227	NT_033912	NT_033982	NT_033988	NT_033896
NT_024133	NT_033987	NT_033985	NT_031847	NT_030066	NT_030772	NT_033228	NT_008646
NT_017696	NT_031860	NT_033898	NT_033920	NT_008748	NT_033222	NT_033990	NT_024085
NT_033984	NT_008797	NT_033897	NT_008583	NT_033220	NT_033891	NT_033895	NT_033917
NT_033989	NT_033918	NT_033919	NT_033893	NT_024037	NT_030075	NT_033890	NT_024064
NT_030070	NT_008769	NT_033229	NT_030059	NT_008818	NT_033221	NT_031855	NT_031856
NT_008902	NT_030764	NT_027097	NT_024086	NT_025835	NT_033224	NT_033225	NT_024040
NT_017795	NT_028298

NT_033982

Links	Contig	Accession	Chr Start	Phs	STS Marker	Gen Chr	Genethon	Marsh Chr	Marshfield	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_033982	AL358234	32725853	2	UT541			10	54.23	2	AC022021,	AC022021, AL358234, AL445311
S/G/Y/R/B/O	NT_033982	AL161936	32816988	3	AFMA106VF5			10	54.23	1	AL358234,	AL358234, AL445311
S/G/Y/R/B/O	NT_033982	AL161936	32816988	3	AFMA106VF5	10	53.30			1	AL358234,	AL358234, AL445311
S/G/Y/R/B/O	NT_033982	AL355376	33077969	3	UT924			14	87.36	1		AL355376, AL365354
S/G/Y/R/B/O	NT_033982	AL390248	33081736	3
S/G/Y/R/B/O	NT_033982	AL359995	33205534	3
S/G/Y/R/B/O	NT_033982	AL355858	33257369	3	AFMB345YA9	10	56.10	10	56.89	1		AL355858
S/G/Y/R/B/O	NT_033982	AL355858	33322758	3	AFMA346ZD5	10	56.20	10	56.89	1		AL355814, AL355858
S/G/Y/R/B/O	NT_033982	AL355858	33390968	3	GGAA6E04			10	56.89	1		AL355814, AL355858
S/G/Y/R/B/O	NT_033982	AL357118	33449457	3	AFM199ZB6	10	56.90	10	57.42	2	AC005878, AL392165,	AC005878, AL392165
S/G/Y/R/B/O	NT_033982	AL365180	33523835	3	AFM342XE9	10	56.70	10	57.42	2	AC005878,	AC005878, AL365180, AL512431
S/G/Y/R/B/O	NT_033982	AL158167	33594910	3	AFM254XB1	10	57.00	10	57.42	1		AL158167, AL512431
S/G/Y/R/B/O	NT_033982	AL158167	33705076	3	AFM164TG9	10	56.80	10	57.42	1		AL157390, AL158167
S/G/Y/R/B/O	NT_033982	AL160060	33781516	3
S/G/Y/R/B/O	NT_033982	AL159170	33978393	3	AFMA282XB1	10	57.10	10	57.42	1		AL159170, AL390024
S/G/Y/R/B/O	NT_033982	AL159170	34054690	3	GATA29G05			10	57.96	1		AL159170
S/G/Y/R/B/O	NT_033982	AL353093	34144024	3	ATA27D02			10	57.42	1		AL353093, AL591706
S/G/Y/R/B/O	NT_033982	AL158036	34250134	3
S/G/Y/R/B/O	NT_033982	AL360172	34472042	3	GATA73E11			10	59.03	1	AL591705,	AC072024, AL360172, AL591103, AL591705
S/G/Y/R/B/O	NT_033982	AL353796	34549683	3	AFM095ZH7	10	59.00	10	59.03	1		AL353796
S/G/Y/R/B/O	NT_033982	AL161651	34793120	3	AFMA224XB1	10	60.40	10	60.64	1	AL590068,	AL161651, AL590068, AL591663
S/G/Y/R/B/O	NT_033982	AL590068	34794355	3
S/G/Y/R/B/O	NT_033982	AL451107	34864135	3
S/G/Y/R/B/O	NT_033982	AL359532	35060186	2	UT539			10	59.82	1		AL359532
S/G/Y/R/B/O	NT_033982	AC025341	35209435	1
S/G/Y/R/B/O	NT_033982	AL591707	35210704	3
S/G/Y/R/B/O	NT_033982	AL596113	35214698	3
S/G/Y/R/B/O	NT_033982	AL359546	35425038	3	UT7493			10	60.64	1		AL359546
S/G/Y/R/B/O	NT_033982	AL356258	35453130	3
S/G/Y/R/B/O	NT_033982	AL117340	35640320	3	MFD200			10	60.64	1		AF225898, AL117340
S/G/Y/R/B/O	NT_033982	AL117340	35656456	3	AFM183XG1	10	60.20	10	60.64	1		AF225898, AL117340
S/G/Y/R/B/O	NT_033982	AL158080	35723499	3	AFM137XB8	10	62.00	10	60.64	1		AL158080
S/G/Y/R/B/O	NT_033982	AL355148	35762261	3
S/G/Y/R/B/O	NT_033982	AL161935	35792576	3	AFMA056WH9	10	60.30	10	60.64	1		AC005877, AF225898, AL161935
S/G/Y/R/B/O	NT_033982	AL353769	35977527	3
S/G/Y/R/B/O	NT_033982	AL390715	36055036	1
S/G/Y/R/B/O	NT_033982	AL591705	36235968	1
S/G/Y/R/B/O	NT_033982	AL365319	36244038	1
S/G/Y/R/B/O	NT_033982	AL161932	36248641	3
S/G/Y/R/B/O	NT_033982		-		GATA69B05			10	60.64	0