|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_008818 | AL359094 | 127819156 | 3 | chr10 | NT_008818 | AL390920 | 127952185 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_008818 | AL359094 | 127819156 | 3 |   |   | AL355295 | 127625429 | | 33730 | 671 | 0 | 34401 |
S/G/Y/R/B/O |
NT_008818 | AL359094 | 127819156 | 3 |   |   | AL731770 | 127952185 | | 125839 | 0 | 0 | 125839 |
S/G/Y/R/B/O |
NT_008818 | AL359094 | 127819156 | 3 |   |   | AL772134 | 127952185 | | 132902 | 0 | 0 | 132902 |
S/G/Y/R/B/O |
NT_008818 | AL359094 | 127819156 | 3 |   |   | AL772134 | 127952185 | | 132902 | 0 | 0 | 132902 |
S/G/Y/R/B/O |
NT_008818 | AL390920 | 127952185 | 3 | chr10 | NT_008818 | AL590372 | 128120550 | 3 | 0 | 1992 | 0 | 1992 |
S/G/Y/R/B/O |
NT_008818 | AL390920 | 127952185 | 3 |   |   | AL355295 | 127952185 | | 107695 | 5548 | 0 | 113243 |
S/G/Y/R/B/O |
NT_008818 | AL390920 | 127952185 | 3 |   |   | AL442068 | 127819156 | | 14777 | 5897 | 3123 | 23797 |
S/G/Y/R/B/O |
NT_008818 | AL390920 | 127952185 | 3 |   |   | AL731770 | 128120550 | | 33361 | 0 | 0 | 33361 |
S/G/Y/R/B/O |
NT_008818 | AL390920 | 127952185 | 3 |   |   | AL772134 | 128120550 | | 41593 | 0 | 0 | 41593 |
S/G/Y/R/B/O |
NT_008818 | AL390920 | 127952185 | 3 |   |   | AL772134 | 128120550 | | 41593 | 0 | 0 | 41593 |
S/G/Y/R/B/O |
NT_008818 | AL590372 | 128120550 | 3 | chr10 | NT_008818 | AL157711 | 128125894 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL157711 | 128125894 | 3 | chr10 | NT_008818 | AL355316 | 128278712 | 3 | 0 | 1987 | 0 | 1987 |
S/G/Y/R/B/O |
NT_008818 | AL157711 | 128125894 | 3 |   |   | AC084095 | 127952185 | | 56583 | 0 | 0 | 56583 |
S/G/Y/R/B/O |
NT_008818 | AL355316 | 128278712 | 3 | chr10 | NT_008818 | AL391005 | 128419360 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL391005 | 128419360 | 3 | chr10 | NT_008818 | AL157393 | 128581138 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL157393 | 128581138 | 3 | chr10 | NT_008818 | AL158166 | 128717373 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_008818 | AL158166 | 128717373 | 3 | chr10 | NT_008818 | AL390236 | 128827225 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL158166 | 128717373 | 3 |   |   | AC131929 | 128419360 | | 72638 | 0 | 0 | 72638 |
S/G/Y/R/B/O |
NT_008818 | AL390236 | 128827225 | 3 | chr10 | NT_008818 | AL355529 | 128948282 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL390236 | 128827225 | 3 |   |   | AC131929 | 128827225 | | 97847 | 0 | 0 | 97847 |
S/G/Y/R/B/O |
NT_008818 | AL355529 | 128948282 | 3 | chr10 | NT_008818 | AL390763 | 129086748 | 3 | 0 | 0 | 1792 | 1792 |
S/G/Y/R/B/O |
NT_008818 | AL355529 | 128948282 | 3 |   |   | AL161649 | 128948282 | | 58827 | 0 | 26251 | 85078 |
S/G/Y/R/B/O |
NT_008818 | AL390763 | 129086748 | 3 | chr10 | NT_008818 | AL358092 | 129246792 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL390763 | 129086748 | 3 |   |   | AL161649 | 129086748 | | 63001 | 0 | 19295 | 82296 |
S/G/Y/R/B/O |
NT_008818 | AL358092 | 129246792 | 3 | chr10 | NT_008818 | AL160174 | 129348608 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL160174 | 129348608 | 3 | chr10 | NT_008818 | AL157897 | 129477182 | 3 | 0 | 0 | 1665 | 1665 |
S/G/Y/R/B/O |
NT_008818 | AL157897 | 129477182 | 3 | chr10 | NT_008818 | AL138897 | 129648492 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL138897 | 129648492 | 3 | chr10 | NT_008818 | AL355537 | 129706271 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL355537 | 129706271 | 3 | chr10 | NT_008818 | AL353722 | 129892999 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_008818 | AL355537 | 129706271 | 3 |   |   | AC019000 | 129706271 | | 115737 | 7558 | 1035 | 124330 |
S/G/Y/R/B/O |
NT_008818 | AL353722 | 129892999 | 3 | chr10 | NT_008818 | AL139820 | 129927422 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008818 | AL353722 | 129892999 | 3 |   |   | AC019001 | 129892999 | | 23691 | 0 | 8645 | 32336 |
S/G/Y/R/B/O |
NT_008818 | AL139820 | 129927422 | 3 | chr10 | NT_008818 | AL391869 | 129997462 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008818 | AL139820 | 129927422 | 3 |   |   | AC019001 | 129706271 | | 55215 | 0 | 2462 | 57677 |
S/G/Y/R/B/O |
NT_008818 | AL391869 | 129997462 | 3 | chr10 | NT_008818 | AL645642 | 130149543 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL391869 | 129997462 | 3 |   |   | AC007898 | 129706271 | | 79202 | 12303 | 1231 | 92736 |
S/G/Y/R/B/O |
NT_008818 | AL391869 | 129997462 | 3 |   |   | AC019001 | 129706271 | | 14197 | 1899 | 0 | 16096 |
S/G/Y/R/B/O |
NT_008818 | AL645642 | 130149543 | 3 | chr10 | NT_008818 | AL359508 | 130203940 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL645642 | 130149543 | 3 |   |   | AC007898 | 130149543 | | 54899 | 0 | 0 | 54899 |
S/G/Y/R/B/O |
NT_008818 | AL645642 | 130149543 | 3 |   |   | AC022688 | 130149543 | | 48878 | 0 | 6136 | 55014 |
S/G/Y/R/B/O |
NT_008818 | AL645642 | 130149543 | 3 |   |   | AC067839 | 130149543 | | 21270 | 0 | 1290 | 22560 |
S/G/Y/R/B/O |
NT_008818 | AL359508 | 130203940 | 3 | chr10 | NT_008818 | AL355531 | 130262238 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL359508 | 130203940 | 3 |   |   | AC007898 | 129997462 | | 54249 | 2376 | 0 | 56625 |
S/G/Y/R/B/O |
NT_008818 | AL359508 | 130203940 | 3 |   |   | AC022688 | 129997462 | | 59341 | 0 | 0 | 59341 |
S/G/Y/R/B/O |
NT_008818 | AL359508 | 130203940 | 3 |   |   | AC067839 | 129997462 | | 55376 | 2430 | 0 | 57806 |
S/G/Y/R/B/O |
NT_008818 | AL355531 | 130262238 | 3 | chr10 | NT_008818 | AL353725 | 130474125 | 3 | 0 | 1992 | 0 | 1992 |
S/G/Y/R/B/O |
NT_008818 | AL355531 | 130262238 | 3 |   |   | AC011849 | 130149543 | | 77447 | 0 | 0 | 77447 |
S/G/Y/R/B/O |
NT_008818 | AL355531 | 130262238 | 3 |   |   | AC022688 | 130149543 | | 28384 | 1975 | 5834 | 36193 |
S/G/Y/R/B/O |
NT_008818 | AL355531 | 130262238 | 3 |   |   | AC067839 | 130149543 | | 72692 | 4144 | 1205 | 78041 |
S/G/Y/R/B/O |
NT_008818 | AL353725 | 130474125 | 3 | chr10 | NT_008818 | AL157832 | 130533649 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL353725 | 130474125 | 3 |   |   | AC011849 | 130203940 | | 13750 | 3332 | 18248 | 35330 |
S/G/Y/R/B/O |
NT_008818 | AL157832 | 130533649 | 3 | chr10 | NT_008818 | AL354950 | 130661841 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL157832 | 130533649 | 3 |   |   | AC011849 | 130262238 | | 21669 | 0 | 2264 | 23933 |
S/G/Y/R/B/O |
NT_008818 | AL354950 | 130661841 | 3 | chr10 | NT_008818 | AL139408 | 130825863 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008818 | AL139408 | 130825863 | 3 | chr10 | NT_008818 | AL139123 | 130865774 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008818 | AL139123 | 130865774 | 3 | chr10 | NT_008818 | AL161648 | 131075201 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008818 | AL161648 | 131075201 | 3 | chr10 | NT_008818 | AL157712 | 131122178 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008818 | AL161648 | 131075201 | 3 |   |   | AC023387 | 130533649 | | 13607 | 2706 | 3102 | 19415 |
S/G/Y/R/B/O |
NT_008818 | AL157712 | 131122178 | 3 | chr10 | NT_008818 | AL355500 | 131253190 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_008818 | AL157712 | 131122178 | 3 |   |   | AC011965 | 130533649 | | 59046 | 2234 | 25110 | 86390 |
S/G/Y/R/B/O |
NT_008818 | AL157712 | 131122178 | 3 |   |   | AC023387 | 130533649 | | 60904 | 2073 | 30394 | 93371 |
S/G/Y/R/B/O |
NT_008818 | AL355500 | 131253190 | 3 | chr10 | NT_008818 | AC016816 | 131365883 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AL355500 | 131253190 | 3 |   |   | AC011965 | 131253190 | | 24245 | 0 | 0 | 24245 |
S/G/Y/R/B/O |
NT_008818 | AL355500 | 131253190 | 3 |   |   | AC023387 | 131365883 | | 67164 | 3467 | 7234 | 77865 |
S/G/Y/R/B/O |
NT_008818 | AC016816 | 131365883 | 3 | chr10 | NT_008818 | AC027669 | 131496002 | 3 | 90161 | 0 | 0 | 90161 |
S/G/Y/R/B/O |
NT_008818 | AC027669 | 131496002 | 3 | chr10 | NT_008818 | AC035138 | 131624974 | 3 | 22260 | 0 | 0 | 22260 |
S/G/Y/R/B/O |
NT_008818 | AC035138 | 131624974 | 3 | chr10 | NT_008818 | AL607076 | 131786994 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008818 | AC035138 | 131624974 | 3 |   |   | AC011636 | 131624974 | | 129246 | 0 | 542 | 129788 |
S/G/Y/R/B/O |
NT_008818 | AL607076 | 131786994 | 3 | chr10 | NT_008818 | AL390203 | 131846338 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008818 | AL607076 | 131786994 | 3 |   |   | AC011636 | 131786994 | | 20502 | 0 | 0 | 20502 |
S/G/Y/R/B/O |
NT_008818 | AL390203 | 131846338 | 3 | chr10 | NT_008818 | AC067746 | 131994960 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_008818 | AC067746 | 131994960 | 3 | chr10 | NT_008818 | AL589949 | 132182505 | 3 | 36362 | 0 | 0 | 36362 |
S/G/Y/R/B/O |
NT_008818 | AC067746 | 131994960 | 3 |   |   | AC012578 | 131994960 | | 119978 | 0 | 925 | 120903 |
S/G/Y/R/B/O |
NT_008818 | AL589949 | 132182505 | 3 | chr10 | NT_008818 | AL607044 | 132299943 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008818 | AL607044 | 132299943 | 3 |   |   |   |   |   |   |   |   |   |
| |
|
|
|