Chromosome 10 - Clone Overlaps

Chromosome 10 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_024115	NT_008705	NT_033896	NT_024133	NT_033985	NT_031847	NT_035034	NT_037750
NT_030772	NT_033228	NT_017696	NT_035036	NT_033898	NT_033984	NT_037751	NT_008583
NT_037752	NT_033890	NT_030059	NT_008902	NT_037753	NT_033224	NT_035040	NT_008818
NT_025835	NT_024040	NT_017795	NT_035044

NT_033896

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_033896	AL591850	32834901	3	chr10	NT_033896	AL365203	32865412	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL365203	32865412	3	chr10	NT_033896	AL133333	33061385	3	0	1994	0	1994
S/G/Y/R/B/O	NT_033896	AL365203	32865412	3			AC041017	32865412		92343	0	4193	96536
S/G/Y/R/B/O	NT_033896	AL365203	32865412	3			AC094097	32865412		144704	0	0	144704
S/G/Y/R/B/O	NT_033896	AL365203	32865412	3			AL590967	33061385		58560	1956	66284	126800
S/G/Y/R/B/O	NT_033896	AL133333	33061385	3	chr10	NT_033896	AL121748	33106995	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL133333	33061385	3			AC041017	32834901		34213	2571	9000	45784
S/G/Y/R/B/O	NT_033896	AL121748	33106995	3	chr10	NT_033896	AL353600	33283178	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL121748	33106995	3			AC041017	32865412		49917	1803	7013	58733
S/G/Y/R/B/O	NT_033896	AL121748	33106995	3			AL591369	33283178		89724	2935	33890	126549
S/G/Y/R/B/O	NT_033896	AL353600	33283178	3	chr10	NT_033896	AL392109	33405718	3	0	1994	0	1994
S/G/Y/R/B/O	NT_033896	AL353600	33283178	3			AL392188	33405718		32919	0	0	32919
S/G/Y/R/B/O	NT_033896	AL392109	33405718	3	chr10	NT_033896	AL356243	33503038	3	0	1995	0	1995
S/G/Y/R/B/O	NT_033896	AL392109	33405718	3			AL392188	33503038		60284	2076	0	62360
S/G/Y/R/B/O	NT_033896	AL356243	33503038	3	chr10	NT_033896	AC018980	33507038	3	0	2006	0	2006
S/G/Y/R/B/O	NT_033896	AC018980	33507038	3	chr10	NT_033896	AL450313	33702741	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AC018980	33507038	3			AC020644	33405718		197700	0	0	197700
S/G/Y/R/B/O	NT_033896	AC018980	33507038	3			AC084133	33405718		40136	3978	4034	48148
S/G/Y/R/B/O	NT_033896	AC018980	33507038	3			AL392188	33503038		47816	0	0	47816
S/G/Y/R/B/O	NT_033896	AL450313	33702741	3	chr10	NT_033896	AL353643	33744722	3	0	1999	0	1999
S/G/Y/R/B/O	NT_033896	AL450313	33702741	3			AC084133	33507038		24857	2710	3861	31428
S/G/Y/R/B/O	NT_033896	AL353643	33744722	3	chr10	NT_033896	AL117338	33872800	3	0	0	100	100
S/G/Y/R/B/O	NT_033896	AL353643	33744722	3			AC084133	33744722		41007	9405	9033	59445
S/G/Y/R/B/O	NT_033896	AL117338	33872800	3	chr10	NT_033896	AL160409	34041478	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL117338	33872800	3			AL391004	33744722		126670	0	0	126670
S/G/Y/R/B/O	NT_033896	AL117338	33872800	3			AL591464	33744722		47972	5407	8387	61766
S/G/Y/R/B/O	NT_033896	AL160409	34041478	3	chr10	NT_033896	AL390766	34145676	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL160409	34041478	3			AC025823	33744722		34868	0	69938	104806
S/G/Y/R/B/O	NT_033896	AL160409	34041478	3			AL391004	34145676		22426	0	6467	28893
S/G/Y/R/B/O	NT_033896	AL160409	34041478	3			AL591464	34145676		52635	0	43477	96112
S/G/Y/R/B/O	NT_033896	AL390766	34145676	3	chr10	NT_033896	AL392123	34336807	3	0	1957	0	1957
S/G/Y/R/B/O	NT_033896	AL390766	34145676	3			AC011644	34145676		150383	2990	10882	164255
S/G/Y/R/B/O	NT_033896	AL390766	34145676	3			AC013705	34145676		78538	3987	344	82869
S/G/Y/R/B/O	NT_033896	AL390766	34145676	3			AC025823	34145676		32571	0	0	32571
S/G/Y/R/B/O	NT_033896	AL390766	34145676	3			AL356462	34041478		123312	2136	37236	162684
S/G/Y/R/B/O	NT_033896	AL390766	34145676	3			AL591464	34336807		23544	0	0	23544
S/G/Y/R/B/O	NT_033896	AL392123	34336807	3	chr10	NT_033896	AL360233	34439164	3	0	1997	0	1997
S/G/Y/R/B/O	NT_033896	AL360233	34439164	3	chr10	NT_033896	AL138768	34546980	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL360233	34439164	3			AC012241	34145676		92070	1395	12080	105545
S/G/Y/R/B/O	NT_033896	AL360233	34439164	3			AL391067	34546980		20284	2690	345	23319
S/G/Y/R/B/O	NT_033896	AL360233	34439164	3			AL392171	34336807		64588	0	7683	72271
S/G/Y/R/B/O	NT_033896	AL138768	34546980	3	chr10	NT_033896	AL590039	34721385	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL138768	34546980	3			AC012241	34336807		27324	0	456	27780
S/G/Y/R/B/O	NT_033896	AL138768	34546980	3			AL391067	34439164		74810	13090	20378	108278
S/G/Y/R/B/O	NT_033896	AL138768	34546980	3			AL392171	34439164		122826	2013	0	124839
S/G/Y/R/B/O	NT_033896	AL590039	34721385	3	chr10	NT_033896	AL603963	34797217	3	0	2000	0	2000
S/G/Y/R/B/O	NT_033896	AL603963	34797217	3	chr10	NT_033896	AL450337	34812474	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL450337	34812474	3	chr10	NT_033896	AL392046	34984461	3	0	1998	0	1998
S/G/Y/R/B/O	NT_033896	AL450337	34812474	3			AL591026	34984461		78197	2605	2038	82840
S/G/Y/R/B/O	NT_033896	AL392046	34984461	3	chr10	NT_033896	AL157783	35130732	3	0	0	1512	1512
S/G/Y/R/B/O	NT_033896	AL392046	34984461	3			AL591026	34812474		32580	5191	0	37771
S/G/Y/R/B/O	NT_033896	AL392046	34984461	3			AL591118	34812474		56900	0	36144	93044
S/G/Y/R/B/O	NT_033896	AL157783	35130732	3	chr10	NT_033896	AL117336	35226375	3	0	1998	0	1998
S/G/Y/R/B/O	NT_033896	AL157783	35130732	3			AC022159	34812474		50469	0	0	50469
S/G/Y/R/B/O	NT_033896	AL157783	35130732	3			AL591118	34984461		29856	5761	9075	44692
S/G/Y/R/B/O	NT_033896	AL117336	35226375	3	chr10	NT_033896	AL603824	35415065	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL117336	35226375	3			AC022159	34984461		17634	0	2469	20103
S/G/Y/R/B/O	NT_033896	AL117336	35226375	3			AL591029	35130732		55103	0	15627	70730
S/G/Y/R/B/O	NT_033896	AL603824	35415065	3	chr10	NT_033896	AL592445	35502936	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL603824	35415065	3			AC008244	35415065		36086	0	0	36086
S/G/Y/R/B/O	NT_033896	AL603824	35415065	3			AL591029	35226375		57423	3084	0	60507
S/G/Y/R/B/O	NT_033896	AL592445	35502936	3	chr10	NT_033896	AL121749	35529349	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL592445	35502936	3			AC008244	35502936		15668	2200	1041	18909
S/G/Y/R/B/O	NT_033896	AL592445	35502936	3			AL591182	35529349		24027	4402	0	28429
S/G/Y/R/B/O	NT_033896	AL121749	35529349	3	chr10	NT_033896	AL358173	35693356	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL121749	35529349	3			AC008244	35415065		83461	0	991	84452
S/G/Y/R/B/O	NT_033896	AL121749	35529349	3			AL591182	35415065		107779	2087	43570	153436
S/G/Y/R/B/O	NT_033896	AL358173	35693356	3	chr10	NT_033896	AL356093	35695350	3	0	1998	0	1998
S/G/Y/R/B/O	NT_033896	AL356093	35695350	3	chr10	NT_033896	AL157892	35893887	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL356093	35695350	3			AL392187	35693356		139610	0	0	139610
S/G/Y/R/B/O	NT_033896	AL356093	35695350	3			AP000728	35693356		71286	23918	20377	115581
S/G/Y/R/B/O	NT_033896	AL157892	35893887	3	chr10	NT_033896	AL365500	35917229	3	0	1998	0	1998
S/G/Y/R/B/O	NT_033896	AL157892	35893887	3			AL392187	35917229		23976	0	0	23976
S/G/Y/R/B/O	NT_033896	AL365500	35917229	3	chr10	NT_033896	AL355300	36068784	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL365500	35917229	3			AL392187	36068784		45375	0	2949	48324
S/G/Y/R/B/O	NT_033896	AL355300	36068784	3	chr10	NT_033896	AC018684	36208240	3	50054	0	0	50054
S/G/Y/R/B/O	NT_033896	AL355300	36068784	3			AC022619	36208240		64626	0	363	64989
S/G/Y/R/B/O	NT_033896	AC018684	36208240	3	chr10	NT_033896	AL390859	36334047	3	0	1998	0	1998
S/G/Y/R/B/O	NT_033896	AC018684	36208240	3			AC022619	35917229		74995	0	0	74995
S/G/Y/R/B/O	NT_033896	AC018684	36208240	3			AL365211	36068784		19288	0	0	19288
S/G/Y/R/B/O	NT_033896	AL390859	36334047	3	chr10	NT_033896	AL590730	36449573	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL390859	36334047	3			AL365211	36208240		60327	0	0	60327
S/G/Y/R/B/O	NT_033896	AL590730	36449573	3	chr10	NT_033896	AL354660	36633874	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL590730	36449573	3			AL591117	36633874		120909	0	19766	140675
S/G/Y/R/B/O	NT_033896	AL590730	36449573	3			AL591722	36633874		55556	0	0	55556
S/G/Y/R/B/O	NT_033896	AL354660	36633874	3	chr10	NT_033896	AL355517	36663439	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL354660	36633874	3			AL591722	36449573		18793	0	12616	31409
S/G/Y/R/B/O	NT_033896	AL355517	36663439	3	chr10	NT_033896	AL390061	36832787	3	0	670	0	670
S/G/Y/R/B/O	NT_033896	AL355517	36663439	3			AC025869	36449573		11289	1789	22583	35661
S/G/Y/R/B/O	NT_033896	AL355517	36663439	3			AL389918	36633874		41531	2229	2565	46325
S/G/Y/R/B/O	NT_033896	AL355517	36663439	3			AL441903	36832787		26850	4154	30122	61126
S/G/Y/R/B/O	NT_033896	AL355517	36663439	3			AL591722	36832787		63942	0	7627	71569
S/G/Y/R/B/O	NT_033896	AL390061	36832787	3	chr10	NT_033896	AL591105	37006933	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL390061	36832787	3			AC025869	36832787		41909	6335	6640	54884
S/G/Y/R/B/O	NT_033896	AL390061	36832787	3			AL389918	36663439		124074	0	0	124074
S/G/Y/R/B/O	NT_033896	AL390061	36832787	3			AL441903	36663439		40954	2476	18658	62088
S/G/Y/R/B/O	NT_033896	AL390061	36832787	3			AL591035	36663439		68034	7496	48866	124396
S/G/Y/R/B/O	NT_033896	AL591105	37006933	3	chr10	NT_033896	AC067744	37016298	3	0	1998	0	1998
S/G/Y/R/B/O	NT_033896	AC067744	37016298	3	chr10	NT_033896	AL357148	37171349	3	0	1999	6023	8022
S/G/Y/R/B/O	NT_033896	AL357148	37171349	3	chr10	NT_033896	AL157387	37236482	3	2000	0	0	2000
S/G/Y/R/B/O	NT_033896	AL357148	37171349	3			AL391494	37236482		54995	4196	0	59191
S/G/Y/R/B/O	NT_033896	AL157387	37236482	3	chr10	NT_033896	AL391686	37384212	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL157387	37236482	3			AL391494	37171349		49919	0	0	49919
S/G/Y/R/B/O	NT_033896	AL391686	37384212	3	chr10	NT_033896	AL133350	37442150	3	0	0	100	100
S/G/Y/R/B/O	NT_033896	AL133350	37442150	3	chr10	NT_033896	AL121927	37531883	3	0	0	100	100
S/G/Y/R/B/O	NT_033896	AL133350	37442150	3			AL591121	37384212		59560	0	10806	70366
S/G/Y/R/B/O	NT_033896	AL121927	37531883	3	chr10	NT_033896	AL132657	37651104	3	0	0	100	100
S/G/Y/R/B/O	NT_033896	AL121927	37531883	3			AL591121	37442150		69902	0	5429	75331
S/G/Y/R/B/O	NT_033896	AL132657	37651104	3	chr10	NT_033896	AL135791	37811747	3	0	0	100	100
S/G/Y/R/B/O	NT_033896	AL135791	37811747	3	chr10	NT_033896	AL132659	37878622	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL135791	37811747	3	chr10	NT_033896	AL390779	37907127	1	53585	3339	6411	63335
S/G/Y/R/B/O	NT_033896	AL132659	37878622	3	chr10	NT_033896	AL390779	37907127	1	0	0	4839	4839
S/G/Y/R/B/O	NT_033896	AL390779	37907127	1	chr10	NT_033896	AL117337	37922008	3	29358	0	17657	47015
S/G/Y/R/B/O	NT_033896	AL390779	37907127	1	chr10	NT_033896	AL135791	37811747	3	53585	3339	6411	63335
S/G/Y/R/B/O	NT_033896	AL390779	37907127	1			AF205588	37907127		55397	3340	15939	74676
S/G/Y/R/B/O	NT_033896	AL390779	37907127	1			AL591000	37811747		16018	1507	0	17525
S/G/Y/R/B/O	NT_033896	AL117337	37922008	3	chr10	NT_033896	AL161931	38083460	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL117337	37922008	3			AL591000	37907127		18276	13365	6227	37868
S/G/Y/R/B/O	NT_033896	AL161931	38083460	3	chr10	NT_033896	AL117339	38103213	3	0	0	100	100
S/G/Y/R/B/O	NT_033896	AL161931	38083460	3			AL591000	38103213		10805	2520	0	13325
S/G/Y/R/B/O	NT_033896	AL161931	38083460	3			AL591107	38103213		10604	0	0	10604
S/G/Y/R/B/O	NT_033896	AL117339	38103213	3	chr10	NT_033896	AL132658	38311755	3	0	0	0	0
S/G/Y/R/B/O	NT_033896	AL117339	38103213	3			AL390956	38083460		65119	0	0	65119
S/G/Y/R/B/O	NT_033896	AL117339	38103213	3			AL591000	38083460		16065	6578	14648	37291
S/G/Y/R/B/O	NT_033896	AL117339	38103213	3			AL591107	38083460		82793	2735	5496	91024
S/G/Y/R/B/O	NT_033896	AL132658	38311755	3	chr10	NT_033896	AL133217	38331745	3	0	0	100	100
S/G/Y/R/B/O	NT_033896	AL132658	38311755	3			AL390956	38331745		12077	1905	0	13982
S/G/Y/R/B/O	NT_033896	AL132658	38311755	3			AL392168	38331745		19699	0	0	19699
S/G/Y/R/B/O	NT_033896	AL133217	38331745	3	chr10	NT_033896	AL133216	38395725	3	0	0	100	100
S/G/Y/R/B/O	NT_033896	AL133217	38331745	3			AC130353	38331745		44561	0	0	44561
S/G/Y/R/B/O	NT_033896	AL133217	38331745	3			AL390956	38395725		63768	0	0	63768
S/G/Y/R/B/O	NT_033896	AL133217	38331745	3			AL392168	38395725		62819	0	0	62819
S/G/Y/R/B/O	NT_033896	AL133216	38395725	3
S/G/Y/R/B/O	NT_033896	AL133216	38395725	3			AC130353	524206		100171	0	37621	137792
S/G/Y/R/B/O	NT_033896	AL133216	38395725	3			AL390956	219641785		29557	0	0	29557
S/G/Y/R/B/O	NT_033896	AL133216	38395725	3			AL392168	219641785		59803	1018	44922	105743