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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_033985 | AC084311 | 41998560 | 1 | chr10 | NT_033985 | AL031601 | 42081635 | 3 | 41178 | 6004 | 47269 | 94451 |
S/G/Y/R/B/O |
NT_033985 | AC084311 | 41998560 | 1 |   |   | AL591130 | 42081635 | | 11538 | 892 | 501 | 12931 |
S/G/Y/R/B/O |
NT_033985 | AL031601 | 42081635 | 3 | chr10 | NT_033985 | AL391099 | 42467348 | 3 | 0 | 2100 | 0 | 2100 |
S/G/Y/R/B/O |
NT_033985 | AL031601 | 42081635 | 3 |   |   | AL354975 | 42469242 | | 33736 | 0 | 0 | 33736 |
S/G/Y/R/B/O |
NT_033985 | AL031601 | 42081635 | 3 |   |   | AL391479 | 42467348 | | 76258 | 0 | 0 | 76258 |
S/G/Y/R/B/O |
NT_033985 | AL031601 | 42081635 | 3 |   |   | AL591130 | 42467348 | | 69857 | 0 | 0 | 69857 |
S/G/Y/R/B/O |
NT_033985 | AL031601 | 42081635 | 3 |   |   | AL844148 | 42467348 | | 70173 | 0 | 2588 | 72761 |
S/G/Y/R/B/O |
NT_033985 | AL391099 | 42467348 | 3 | chr10 | NT_033985 | AL022345 | 42469242 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_033985 | AL022345 | 42469242 | 3 | chr10 | NT_033985 | AL022344 | 42613570 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033985 | AL022345 | 42469242 | 3 |   |   | AL023808 | 42081635 | | 84625 | 0 | 6341 | 90966 |
S/G/Y/R/B/O |
NT_033985 | AL022345 | 42469242 | 3 |   |   | AL354975 | 42081635 | | 50332 | 0 | 43477 | 93809 |
S/G/Y/R/B/O |
NT_033985 | AL022345 | 42469242 | 3 |   |   | AL391479 | 42467348 | | 20411 | 2108 | 0 | 22519 |
S/G/Y/R/B/O |
NT_033985 | AL022345 | 42469242 | 3 |   |   | AL844148 | 42467348 | | 29551 | 0 | 0 | 29551 |
S/G/Y/R/B/O |
NT_033985 | AL022344 | 42613570 | 3 | chr10 | NT_033985 | AL365199 | 42811328 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033985 | AL022344 | 42613570 | 3 |   |   | AL023808 | 42467348 | | 55270 | 0 | 0 | 55270 |
S/G/Y/R/B/O |
NT_033985 | AL022344 | 42613570 | 3 |   |   | AL355583 | 42467348 | | 10978 | 0 | 0 | 10978 |
S/G/Y/R/B/O |
NT_033985 | AL022344 | 42613570 | 3 |   |   | AL591132 | 42467348 | | 93622 | 0 | 0 | 93622 |
S/G/Y/R/B/O |
NT_033985 | AL022344 | 42613570 | 3 |   |   | AL591181 | 42467348 | | 41826 | 2916 | 52004 | 96746 |
S/G/Y/R/B/O |
NT_033985 | AL365199 | 42811328 | 3 | chr10 | NT_033985 | AC010864 | 42967663 | 3 | 0 | 0 | 1787 | 1787 |
S/G/Y/R/B/O |
NT_033985 | AL365199 | 42811328 | 3 |   |   | AL591169 | 42967663 | | 78570 | 0 | 14971 | 93541 |
S/G/Y/R/B/O |
NT_033985 | AL365199 | 42811328 | 3 |   |   | AL591181 | 42967663 | | 46666 | 0 | 6044 | 52710 |
S/G/Y/R/B/O |
NT_033985 | AC010864 | 42967663 | 3 | chr10 | NT_033985 | AC068707 | 43171457 | 3 | 15775 | 0 | 0 | 15775 |
S/G/Y/R/B/O |
NT_033985 | AC010864 | 42967663 | 3 |   |   | AL590872 | 42811328 | | 20963 | 0 | 31918 | 52881 |
S/G/Y/R/B/O |
NT_033985 | AC010864 | 42967663 | 3 |   |   | AL591116 | 42811328 | | 106839 | 0 | 3678 | 110517 |
S/G/Y/R/B/O |
NT_033985 | AC010864 | 42967663 | 3 |   |   | AL591169 | 42811328 | | 65348 | 0 | 0 | 65348 |
S/G/Y/R/B/O |
NT_033985 | AC068707 | 43171457 | 3 | chr10 | NT_033985 | AL512654 | 43325076 | 3 | 0 | 1992 | 0 | 1992 |
S/G/Y/R/B/O |
NT_033985 | AC068707 | 43171457 | 3 |   |   | AL590872 | 43325076 | | 117204 | 7715 | 7251 | 132170 |
S/G/Y/R/B/O |
NT_033985 | AC068707 | 43171457 | 3 |   |   | AL591116 | 43325076 | | 45237 | 2875 | 60096 | 108208 |
S/G/Y/R/B/O |
NT_033985 | AL512654 | 43325076 | 3 | chr10 | NT_033985 | AL450326 | 43368352 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_033985 | AL512654 | 43325076 | 3 |   |   | AL591702 | 43368352 | | 22119 | 0 | 0 | 22119 |
S/G/Y/R/B/O |
NT_033985 | AL450326 | 43368352 | 3 | chr10 | NT_033985 | AL645634 | 43564139 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033985 | AL450326 | 43368352 | 3 |   |   | AL591702 | 43325076 | | 34548 | 4677 | 17210 | 56435 |
S/G/Y/R/B/O |
NT_033985 | AL645634 | 43564139 | 3 | chr10 | NT_033985 | AL355989 | 43642245 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL645634 | 43564139 | 3 |   |   | AL591119 | 43642245 | | 73322 | 0 | 0 | 73322 |
S/G/Y/R/B/O |
NT_033985 | AL355989 | 43642245 | 3 | chr10 | NT_033985 | AL139237 | 43801696 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033985 | AL355989 | 43642245 | 3 |   |   | AC021540 | 43642245 | | 13062 | 3165 | 0 | 16227 |
S/G/Y/R/B/O |
NT_033985 | AL355989 | 43642245 | 3 |   |   | AL390714 | 43642245 | | 13753 | 0 | 591 | 14344 |
S/G/Y/R/B/O |
NT_033985 | AL355989 | 43642245 | 3 |   |   | AL591119 | 43642245 | | 132889 | 0 | 0 | 132889 |
S/G/Y/R/B/O |
NT_033985 | AL139237 | 43801696 | 3 | chr10 | NT_033985 | AL512640 | 43920498 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL139237 | 43801696 | 3 |   |   | AC021540 | 43564139 | | 50150 | 0 | 43017 | 93167 |
S/G/Y/R/B/O |
NT_033985 | AL139237 | 43801696 | 3 |   |   | AL390714 | 43564139 | | 107516 | 0 | 9622 | 117138 |
S/G/Y/R/B/O |
NT_033985 | AL512640 | 43920498 | 3 | chr10 | NT_033985 | AL392045 | 44014820 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_033985 | AL512640 | 43920498 | 3 |   |   | AC021540 | 43920498 | | 41794 | 0 | 1220 | 43014 |
S/G/Y/R/B/O |
NT_033985 | AL512640 | 43920498 | 3 |   |   | AL390714 | 43801696 | | 89313 | 0 | 0 | 89313 |
S/G/Y/R/B/O |
NT_033985 | AL392045 | 44014820 | 3 | chr10 | NT_033985 | AL137026 | 44174753 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_033985 | AL392045 | 44014820 | 3 |   |   | AC022954 | 44014820 | | 57736 | 0 | 0 | 57736 |
S/G/Y/R/B/O |
NT_033985 | AL392045 | 44014820 | 3 |   |   | AL391723 | 44174753 | | 42086 | 0 | 10776 | 52862 |
S/G/Y/R/B/O |
NT_033985 | AL392045 | 44014820 | 3 |   |   | AL591124 | 43920498 | | 67000 | 0 | 0 | 67000 |
S/G/Y/R/B/O |
NT_033985 | AL137026 | 44174753 | 3 | chr10 | NT_033985 | AL355141 | 44357227 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL137026 | 44174753 | 3 |   |   | AC012277 | 43920498 | | 81154 | 1747 | 0 | 82901 |
S/G/Y/R/B/O |
NT_033985 | AL137026 | 44174753 | 3 |   |   | AL390792 | 44357227 | | 53685 | 0 | 5495 | 59180 |
S/G/Y/R/B/O |
NT_033985 | AL137026 | 44174753 | 3 |   |   | AL591124 | 44014820 | | 14600 | 2092 | 5592 | 22284 |
S/G/Y/R/B/O |
NT_033985 | AL355141 | 44357227 | 3 | chr10 | NT_033985 | AL356157 | 44385858 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL355141 | 44357227 | 3 |   |   | AL390792 | 44385858 | | 21352 | 0 | 0 | 21352 |
S/G/Y/R/B/O |
NT_033985 | AL356157 | 44385858 | 3 | chr10 | NT_033985 | AL359677 | 44582775 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033985 | AL356157 | 44385858 | 3 |   |   | AC022646 | 44385858 | | 18304 | 0 | 0 | 18304 |
S/G/Y/R/B/O |
NT_033985 | AL359677 | 44582775 | 3 | chr10 | NT_033985 | AL139119 | 44699227 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL359677 | 44582775 | 3 |   |   | AC022646 | 44357227 | | 20413 | 0 | 47755 | 68168 |
S/G/Y/R/B/O |
NT_033985 | AL139119 | 44699227 | 3 | chr10 | NT_033985 | AL353801 | 44790551 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL139119 | 44699227 | 3 |   |   | AC021395 | 44699227 | | 47061 | 4138 | 3682 | 54881 |
S/G/Y/R/B/O |
NT_033985 | AL353801 | 44790551 | 3 | chr10 | NT_033985 | AL390758 | 45011041 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033985 | AL353801 | 44790551 | 3 |   |   | AC021395 | 44582775 | | 68114 | 5716 | 14144 | 87974 |
S/G/Y/R/B/O |
NT_033985 | AL390758 | 45011041 | 3 | chr10 | NT_033985 | AL358394 | 45024291 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL358394 | 45024291 | 3 | chr10 | NT_033985 | AL512324 | 45139150 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL358394 | 45024291 | 3 |   |   | AL161653 | 45024291 | | 25868 | 15016 | 6367 | 47251 |
S/G/Y/R/B/O |
NT_033985 | AL512324 | 45139150 | 3 | chr10 | NT_033985 | AL731567 | 45305623 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_033985 | AL512324 | 45139150 | 3 |   |   | AC011879 | 45139150 | | 17541 | 15206 | 4118 | 36865 |
S/G/Y/R/B/O |
NT_033985 | AL731567 | 45305623 | 3 | chr10 | NT_033985 | AL512595 | 45432889 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL731567 | 45305623 | 3 |   |   | AC011879 | 45024291 | | 27803 | 4957 | 0 | 32760 |
S/G/Y/R/B/O |
NT_033985 | AL512595 | 45432889 | 3 | chr10 | NT_033985 | AL445201 | 45511668 | 3 | 6495 | 0 | 0 | 6495 |
S/G/Y/R/B/O |
NT_033985 | AL445201 | 45511668 | 3 | chr10 | NT_033985 | AL645998 | 45684357 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL445201 | 45511668 | 3 |   |   | AC021320 | 45305623 | | 51875 | 10523 | 16426 | 78824 |
S/G/Y/R/B/O |
NT_033985 | AL445201 | 45511668 | 3 |   |   | AL732445 | 45684357 | | 12983 | 2755 | 0 | 15738 |
S/G/Y/R/B/O |
NT_033985 | AL445201 | 45511668 | 3 |   |   | AL772286 | 45684357 | | 103229 | 0 | 0 | 103229 |
S/G/Y/R/B/O |
NT_033985 | AL645998 | 45684357 | 3 | chr10 | NT_033985 | AL731535 | 45692798 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL645998 | 45684357 | 3 |   |   | AL772286 | 45692798 | | 10441 | 0 | 0 | 10441 |
S/G/Y/R/B/O |
NT_033985 | AL731535 | 45692798 | 3 | chr10 | NT_033985 | AC012044 | 45725319 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_033985 | AL731535 | 45692798 | 3 |   |   | AC021320 | 45725319 | | 27811 | 2065 | 6062 | 35938 |
S/G/Y/R/B/O |
NT_033985 | AL731535 | 45692798 | 3 |   |   | AL772286 | 45684357 | | 34520 | 0 | 0 | 34520 |
S/G/Y/R/B/O |
NT_033985 | AC012044 | 45725319 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_033985 | AC012044 | 45725319 | 3 | chr10 | NT_033898 | AL442003 | 50591090 | 3 | 26419 | 0 | 0 | 26419 |
S/G/Y/R/B/O |
NT_033985 | AC012044 | 45725319 | 3 | chr10 | NT_033898 | AL450342 | 50403075 | 3 | 58704 | 0 | 0 | 58704 |
S/G/Y/R/B/O |
NT_033985 | AC012044 | 45725319 | 3 | chr10 | NT_035036 | AL672187 | 50095485 | 3 | 142754 | 0 | 0 | 142754 |
S/G/Y/R/B/O |
NT_033985 | AC012044 | 45725319 | 3 |   |   | AC021320 | 45684357 | | 13861 | 0 | 20946 | 34807 |
S/G/Y/R/B/O |
NT_033985 | AC012044 | 45725319 | 3 |   |   | AL772286 | 45692798 | | 14213 | 0 | 0 | 14213 |
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