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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_037752 | AC013285 | 77453716 | 3 | chr10 | NT_037752 | AC013738 | 77604580 | 3 | 51541 | 0 | 0 | 51541 |
S/G/Y/R/B/O |
NT_037752 | AC013738 | 77604580 | 3 | chr10 | NT_037752 | AC011439 | 77789022 | 3 | 36032 | 0 | 0 | 36032 |
S/G/Y/R/B/O |
NT_037752 | AC011439 | 77789022 | 3 | chr10 | NT_037752 | AL731560 | 77950414 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AC011439 | 77789022 | 3 |   |   | AC016140 | 77604580 | | 25160 | 0 | 0 | 25160 |
S/G/Y/R/B/O |
NT_037752 | AL731560 | 77950414 | 3 | chr10 | NT_037752 | AL157833 | 78050830 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_037752 | AL157833 | 78050830 | 3 | chr10 | NT_037752 | AC021032 | 78070174 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AL157833 | 78050830 | 3 |   |   | AC012111 | 78050830 | | 15234 | 0 | 0 | 15234 |
S/G/Y/R/B/O |
NT_037752 | AC021032 | 78070174 | 3 | chr10 | NT_037752 | AL731575 | 78228808 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AC021032 | 78070174 | 3 |   |   | AC012111 | 77950414 | | 111356 | 6361 | 42068 | 159785 |
S/G/Y/R/B/O |
NT_037752 | AC021032 | 78070174 | 3 |   |   | AC067724 | 77950414 | | 60553 | 2175 | 37239 | 99967 |
S/G/Y/R/B/O |
NT_037752 | AC021032 | 78070174 | 3 |   |   | AL607037 | 78050830 | | 43077 | 0 | 0 | 43077 |
S/G/Y/R/B/O |
NT_037752 | AL731575 | 78228808 | 3 | chr10 | NT_037752 | AL627447 | 78323020 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AL731575 | 78228808 | 3 |   |   | AC021027 | 78228808 | | 56683 | 2397 | 0 | 59080 |
S/G/Y/R/B/O |
NT_037752 | AL731575 | 78228808 | 3 |   |   | AC067724 | 78070174 | | 38151 | 2188 | 22117 | 62456 |
S/G/Y/R/B/O |
NT_037752 | AL731575 | 78228808 | 3 |   |   | AC087418 | 78070174 | | 38349 | 2937 | 9460 | 50746 |
S/G/Y/R/B/O |
NT_037752 | AL731575 | 78228808 | 3 |   |   | AL607037 | 78070174 | | 96212 | 0 | 0 | 96212 |
S/G/Y/R/B/O |
NT_037752 | AL627447 | 78323020 | 3 | chr10 | NT_037752 | AC067745 | 78373559 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_037752 | AL627447 | 78323020 | 3 |   |   | AC021027 | 78323020 | | 49304 | 2353 | 0 | 51657 |
S/G/Y/R/B/O |
NT_037752 | AL627447 | 78323020 | 3 |   |   | AC087418 | 78373559 | | 50305 | 1969 | 0 | 52274 |
S/G/Y/R/B/O |
NT_037752 | AL627447 | 78323020 | 3 |   |   | AL607037 | 78373559 | | 40541 | 0 | 0 | 40541 |
S/G/Y/R/B/O |
NT_037752 | AC067745 | 78373559 | 3 | chr10 | NT_037752 | AL607069 | 78527699 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_037752 | AC067745 | 78373559 | 3 |   |   | AC013420 | 78228808 | | 31550 | 2785 | 69634 | 103969 |
S/G/Y/R/B/O |
NT_037752 | AC067745 | 78373559 | 3 |   |   | AC021027 | 78228808 | | 50933 | 2301 | 31461 | 84695 |
S/G/Y/R/B/O |
NT_037752 | AC067745 | 78373559 | 3 |   |   | AC087418 | 78228808 | | 66644 | 0 | 0 | 66644 |
S/G/Y/R/B/O |
NT_037752 | AL607069 | 78527699 | 3 | chr10 | NT_037752 | AL731556 | 78529693 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AL731556 | 78529693 | 3 | chr10 | NT_037752 | AL450306 | 78730696 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037752 | AL731556 | 78529693 | 3 |   |   | AC055751 | 78529693 | | 27609 | 16014 | 26579 | 70202 |
S/G/Y/R/B/O |
NT_037752 | AL731556 | 78529693 | 3 |   |   | AC063928 | 78529693 | | 72660 | 9513 | 19545 | 101718 |
S/G/Y/R/B/O |
NT_037752 | AL731556 | 78529693 | 3 |   |   | AC063930 | 78529693 | | 40914 | 16571 | 48426 | 105911 |
S/G/Y/R/B/O |
NT_037752 | AL731556 | 78529693 | 3 |   |   | AC084015 | 78529693 | | 104210 | 2095 | 25050 | 131355 |
S/G/Y/R/B/O |
NT_037752 | AL450306 | 78730696 | 3 | chr10 | NT_037752 | AL391421 | 78777233 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AL391421 | 78777233 | 3 | chr10 | NT_037752 | AL512628 | 78943472 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AL391421 | 78777233 | 3 |   |   | AC010193 | 78777233 | | 55734 | 8947 | 13086 | 77767 |
S/G/Y/R/B/O |
NT_037752 | AL391421 | 78777233 | 3 |   |   | AC013252 | 78777233 | | 18827 | 0 | 24197 | 43024 |
S/G/Y/R/B/O |
NT_037752 | AL512628 | 78943472 | 3 | chr10 | NT_037752 | AL731555 | 79035034 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AL512628 | 78943472 | 3 |   |   | AC010199 | 78943472 | | 21727 | 0 | 3289 | 25016 |
S/G/Y/R/B/O |
NT_037752 | AL512628 | 78943472 | 3 |   |   | AC087586 | 78943472 | | 12940 | 0 | 0 | 12940 |
S/G/Y/R/B/O |
NT_037752 | AL731555 | 79035034 | 3 | chr10 | NT_037752 | AL731570 | 79213423 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037752 | AL731555 | 79035034 | 3 |   |   | AC010199 | 79035034 | | 110179 | 0 | 9978 | 120157 |
S/G/Y/R/B/O |
NT_037752 | AL731555 | 79035034 | 3 |   |   | AC087586 | 79035034 | | 29560 | 5571 | 13032 | 48163 |
S/G/Y/R/B/O |
NT_037752 | AL731570 | 79213423 | 3 | chr10 | NT_037752 | AC010163 | 79229573 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037752 | AC010163 | 79229573 | 3 | chr10 | NT_037752 | AC012560 | 79384642 | 3 | 52450 | 0 | 0 | 52450 |
S/G/Y/R/B/O |
NT_037752 | AC010163 | 79229573 | 3 |   |   | AC055756 | 79384642 | | 33404 | 0 | 19323 | 52727 |
S/G/Y/R/B/O |
NT_037752 | AC012560 | 79384642 | 3 | chr10 | NT_037752 | AL583852 | 79503076 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AC012560 | 79384642 | 3 |   |   | AC012084 | 79229573 | | 88462 | 0 | 0 | 88462 |
S/G/Y/R/B/O |
NT_037752 | AC012560 | 79384642 | 3 |   |   | AC055756 | 79229573 | | 61555 | 2764 | 35518 | 99837 |
S/G/Y/R/B/O |
NT_037752 | AC012560 | 79384642 | 3 |   |   | AC073371 | 79229573 | | 46958 | 0 | 27923 | 74881 |
S/G/Y/R/B/O |
NT_037752 | AL583852 | 79503076 | 3 | chr10 | NT_037752 | AC016820 | 79557777 | 3 | 54247 | 0 | 0 | 54247 |
S/G/Y/R/B/O |
NT_037752 | AL583852 | 79503076 | 3 |   |   | AC010187 | 79503076 | | 22554 | 0 | 0 | 22554 |
S/G/Y/R/B/O |
NT_037752 | AL583852 | 79503076 | 3 |   |   | AC011795 | 79503076 | | 19946 | 0 | 1293 | 21239 |
S/G/Y/R/B/O |
NT_037752 | AL583852 | 79503076 | 3 |   |   | AC012084 | 79503076 | | 56701 | 0 | 0 | 56701 |
S/G/Y/R/B/O |
NT_037752 | AL583852 | 79503076 | 3 |   |   | AC023800 | 79557777 | | 17503 | 1495 | 0 | 18998 |
S/G/Y/R/B/O |
NT_037752 | AL583852 | 79503076 | 3 |   |   | AC055756 | 79557777 | | 20140 | 0 | 0 | 20140 |
S/G/Y/R/B/O |
NT_037752 | AL583852 | 79503076 | 3 |   |   | AC073371 | 79557777 | | 48217 | 4536 | 1637 | 54390 |
S/G/Y/R/B/O |
NT_037752 | AC016820 | 79557777 | 3 | chr10 | NT_037752 | AC074323 | 79697894 | 3 | 73500 | 0 | 0 | 73500 |
S/G/Y/R/B/O |
NT_037752 | AC016820 | 79557777 | 3 |   |   | AC010187 | 79557777 | | 78816 | 0 | 37637 | 116453 |
S/G/Y/R/B/O |
NT_037752 | AC016820 | 79557777 | 3 |   |   | AC011795 | 79557777 | | 60923 | 0 | 60016 | 120939 |
S/G/Y/R/B/O |
NT_037752 | AC016820 | 79557777 | 3 |   |   | AC012084 | 79557777 | | 78517 | 0 | 0 | 78517 |
S/G/Y/R/B/O |
NT_037752 | AC016820 | 79557777 | 3 |   |   | AC013419 | 79557777 | | 62199 | 0 | 8099 | 70298 |
S/G/Y/R/B/O |
NT_037752 | AC016820 | 79557777 | 3 |   |   | AC023800 | 79557777 | | 49148 | 8021 | 45339 | 102508 |
S/G/Y/R/B/O |
NT_037752 | AC016820 | 79557777 | 3 |   |   | AC055756 | 79557777 | | 17689 | 0 | 0 | 17689 |
S/G/Y/R/B/O |
NT_037752 | AC016820 | 79557777 | 3 |   |   | AC073371 | 79557777 | | 51081 | 7146 | 4267 | 62494 |
S/G/Y/R/B/O |
NT_037752 | AC074323 | 79697894 | 3 | chr10 | NT_037752 | AL358034 | 79781214 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AC074323 | 79697894 | 3 |   |   | AC010187 | 79503076 | | 63101 | 0 | 0 | 63101 |
S/G/Y/R/B/O |
NT_037752 | AC074323 | 79697894 | 3 |   |   | AC010195 | 79503076 | | 61042 | 0 | 6820 | 67862 |
S/G/Y/R/B/O |
NT_037752 | AC074323 | 79697894 | 3 |   |   | AC011795 | 79503076 | | 25035 | 0 | 47236 | 72271 |
S/G/Y/R/B/O |
NT_037752 | AC074323 | 79697894 | 3 |   |   | AC013419 | 79503076 | | 144976 | 0 | 8099 | 153075 |
S/G/Y/R/B/O |
NT_037752 | AC074323 | 79697894 | 3 |   |   | AC023800 | 79557777 | | 19787 | 1994 | 29348 | 51129 |
S/G/Y/R/B/O |
NT_037752 | AL358034 | 79781214 | 3 | chr10 | NT_037752 | AL450398 | 79887587 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AL358034 | 79781214 | 3 |   |   | AC010195 | 79781214 | | 108256 | 0 | 0 | 108256 |
S/G/Y/R/B/O |
NT_037752 | AL358034 | 79781214 | 3 |   |   | AC013419 | 79781214 | | 18711 | 8324 | 7859 | 34894 |
S/G/Y/R/B/O |
NT_037752 | AL450398 | 79887587 | 3 | chr10 | NT_037752 | AL356753 | 79940650 | 3 | 0 | 0 | 1732 | 1732 |
S/G/Y/R/B/O |
NT_037752 | AL450398 | 79887587 | 3 |   |   | AC013253 | 79887587 | | 10399 | 0 | 16402 | 26801 |
S/G/Y/R/B/O |
NT_037752 | AL356753 | 79940650 | 3 | chr10 | NT_037752 | AL358782 | 80122110 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AL356753 | 79940650 | 3 |   |   | AC012465 | 79781214 | | 78307 | 8370 | 15976 | 102653 |
S/G/Y/R/B/O |
NT_037752 | AL358782 | 80122110 | 3 | chr10 | NT_037752 | AL391665 | 80163982 | 3 | 0 | 1993 | 0 | 1993 |
S/G/Y/R/B/O |
NT_037752 | AL358782 | 80122110 | 3 |   |   | AC012465 | 79887587 | | 17165 | 6968 | 7898 | 32031 |
S/G/Y/R/B/O |
NT_037752 | AL358782 | 80122110 | 3 |   |   | AL139242 | 79887587 | | 43855 | 0 | 0 | 43855 |
S/G/Y/R/B/O |
NT_037752 | AL391665 | 80163982 | 3 | chr10 | NT_037752 | AL133481 | 80321848 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037752 | AL391665 | 80163982 | 3 |   |   | AL139242 | 80321848 | | 99154 | 2091 | 7946 | 109191 |
S/G/Y/R/B/O |
NT_037752 | AL133481 | 80321848 | 3 | chr10 | NT_037752 | AC068139 | 80463196 | 3 | 0 | 1985 | 0 | 1985 |
S/G/Y/R/B/O |
NT_037752 | AL133481 | 80321848 | 3 |   |   | AC078775 | 80463196 | | 59697 | 8999 | 25337 | 94033 |
S/G/Y/R/B/O |
NT_037752 | AC068139 | 80463196 | 3 | chr10 | NT_037752 | AL132656 | 80639990 | 3 | 0 | 0 | 21593 | 21593 |
S/G/Y/R/B/O |
NT_037752 | AC068139 | 80463196 | 3 |   |   | AC010194 | 80163982 | | 123810 | 0 | 0 | 123810 |
S/G/Y/R/B/O |
NT_037752 | AC068139 | 80463196 | 3 |   |   | AC078775 | 80163982 | | 24985 | 0 | 0 | 24985 |
S/G/Y/R/B/O |
NT_037752 | AL132656 | 80639990 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_037752 | AL132656 | 80639990 | 3 |   |   | AC010194 | 80321848 | | 52443 | 0 | 0 | 52443 |
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