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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_008902 | AL355302 | 115338207 | 3 | chr10 | NT_008902 | AL133384 | 115402960 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_008902 | AL133384 | 115402960 | 3 | chr10 | NT_008902 | AL590109 | 115537532 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_008902 | AL590109 | 115537532 | 3 | chr10 | NT_008902 | AL354873 | 115543800 | 3 | 0 | 0 | 100 | 100 |
S/G/Y/R/B/O |
NT_008902 | AL354873 | 115543800 | 3 | chr10 | NT_008902 | AL137025 | 115731044 | 3 | 0 | 549 | 0 | 549 |
S/G/Y/R/B/O |
NT_008902 | AL354873 | 115543800 | 3 |   |   | AC005881 | 115543800 | | 32668 | 0 | 0 | 32668 |
S/G/Y/R/B/O |
NT_008902 | AL137025 | 115731044 | 3 | chr10 | NT_008902 | AL355340 | 115917557 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL137025 | 115731044 | 3 |   |   | AC005881 | 115537532 | | 149207 | 0 | 0 | 149207 |
S/G/Y/R/B/O |
NT_008902 | AL137025 | 115731044 | 3 |   |   | AL391648 | 115917557 | | 12390 | 0 | 0 | 12390 |
S/G/Y/R/B/O |
NT_008902 | AL355340 | 115917557 | 3 | chr10 | NT_008902 | AL355530 | 116029999 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_008902 | AL355340 | 115917557 | 3 |   |   | AL391648 | 116029999 | | 84947 | 0 | 27050 | 111997 |
S/G/Y/R/B/O |
NT_008902 | AL355530 | 116029999 | 3 | chr10 | NT_008902 | AL512304 | 116224933 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008902 | AL355530 | 116029999 | 3 |   |   | AC016042 | 116029999 | | 133119 | 0 | 0 | 133119 |
S/G/Y/R/B/O |
NT_008902 | AL355530 | 116029999 | 3 |   |   | AF042484 | 116029999 | | 38584 | 0 | 0 | 38584 |
S/G/Y/R/B/O |
NT_008902 | AL512304 | 116224933 | 3 | chr10 | NT_008902 | AL357059 | 116293570 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008902 | AL357059 | 116293570 | 3 | chr10 | NT_008902 | AL356100 | 116365697 | 3 | 0 | 0 | 1531 | 1531 |
S/G/Y/R/B/O |
NT_008902 | AL356100 | 116365697 | 3 | chr10 | NT_008902 | AL392087 | 116554058 | 3 | 0 | 1989 | 0 | 1989 |
S/G/Y/R/B/O |
NT_008902 | AL356100 | 116365697 | 3 |   |   | AL159173 | 116365697 | | 47865 | 0 | 0 | 47865 |
S/G/Y/R/B/O |
NT_008902 | AL392087 | 116554058 | 3 | chr10 | NT_008902 | AC091667 | 116746042 | 3 | 9886 | 0 | 0 | 9886 |
S/G/Y/R/B/O |
NT_008902 | AL392087 | 116554058 | 3 |   |   | AC005873 | 116554058 | | 74483 | 0 | 0 | 74483 |
S/G/Y/R/B/O |
NT_008902 | AC091667 | 116746042 | 3 | chr10 | NT_008902 | AC022542 | 116880280 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_008902 | AC022542 | 116880280 | 3 | chr10 | NT_008902 | AC073588 | 117064136 | 3 | 13502 | 0 | 0 | 13502 |
S/G/Y/R/B/O |
NT_008902 | AC022542 | 116880280 | 3 |   |   | AC005384 | 116554058 | | 115087 | 0 | 0 | 115087 |
S/G/Y/R/B/O |
NT_008902 | AC022542 | 116880280 | 3 |   |   | AC021924 | 116554058 | | 132619 | 7515 | 2495 | 142629 |
S/G/Y/R/B/O |
NT_008902 | AC073588 | 117064136 | 3 | chr10 | NT_008902 | AC012470 | 117216689 | 3 | 24182 | 0 | 0 | 24182 |
S/G/Y/R/B/O |
NT_008902 | AC073588 | 117064136 | 3 |   |   | AC005384 | 116746042 | | 76355 | 0 | 0 | 76355 |
S/G/Y/R/B/O |
NT_008902 | AC012470 | 117216689 | 3 | chr10 | NT_008902 | AC011328 | 117314977 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_008902 | AC012470 | 117216689 | 3 |   |   | AC005872 | 116880280 | | 48775 | 0 | 0 | 48775 |
S/G/Y/R/B/O |
NT_008902 | AC011328 | 117314977 | 3 | chr10 | NT_008902 | AL731653 | 117529007 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AC011328 | 117314977 | 3 |   |   | AC005872 | 117064136 | | 42669 | 0 | 0 | 42669 |
S/G/Y/R/B/O |
NT_008902 | AC011328 | 117314977 | 3 |   |   | AC011098 | 117064136 | | 96113 | 5267 | 0 | 101380 |
S/G/Y/R/B/O |
NT_008902 | AL731653 | 117529007 | 3 | chr10 | NT_008902 | AC016825 | 117592212 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL731653 | 117529007 | 3 |   |   | AC011098 | 117529007 | | 22789 | 0 | 4114 | 26903 |
S/G/Y/R/B/O |
NT_008902 | AL731653 | 117529007 | 3 |   |   | AL592441 | 117592212 | | 40122 | 0 | 0 | 40122 |
S/G/Y/R/B/O |
NT_008902 | AC016825 | 117592212 | 3 | chr10 | NT_008902 | AL607110 | 117788473 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_008902 | AC016825 | 117592212 | 3 |   |   | AC005660 | 117592212 | | 97197 | 0 | 0 | 97197 |
S/G/Y/R/B/O |
NT_008902 | AC016825 | 117592212 | 3 |   |   | AC006178 | 117592212 | | 12402 | 0 | 0 | 12402 |
S/G/Y/R/B/O |
NT_008902 | AC016825 | 117592212 | 3 |   |   | AL592441 | 117592212 | | 120376 | 0 | 0 | 120376 |
S/G/Y/R/B/O |
NT_008902 | AL607110 | 117788473 | 3 | chr10 | NT_008902 | AC023283 | 117798340 | 3 | 0 | 0 | 1754 | 1754 |
S/G/Y/R/B/O |
NT_008902 | AC023283 | 117798340 | 3 | chr10 | NT_008902 | AC012308 | 118014414 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008902 | AC023283 | 117798340 | 3 |   |   | AC005210 | 117798340 | | 82626 | 0 | 0 | 82626 |
S/G/Y/R/B/O |
NT_008902 | AC012308 | 118014414 | 3 | chr10 | NT_008902 | AL731557 | 118107522 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_008902 | AL731557 | 118107522 | 3 | chr10 | NT_008902 | AL391988 | 118247590 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL391988 | 118247590 | 3 | chr10 | NT_008902 | AL359836 | 118350301 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008902 | AL359836 | 118350301 | 3 | chr10 | NT_008902 | AC005871 | 118397353 | 3 | 0 | 1991 | 0 | 1991 |
S/G/Y/R/B/O |
NT_008902 | AC005871 | 118397353 | 3 | chr10 | NT_008902 | AL158078 | 118581777 | 3 | 0 | 0 | 94 | 94 |
S/G/Y/R/B/O |
NT_008902 | AC005871 | 118397353 | 3 |   |   | AC005887 | 118397353 | | 36582 | 0 | 0 | 36582 |
S/G/Y/R/B/O |
NT_008902 | AL158078 | 118581777 | 3 | chr10 | NT_008902 | AL356419 | 118585055 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008902 | AL356419 | 118585055 | 3 | chr10 | NT_008902 | AL139121 | 118711187 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL356419 | 118585055 | 3 |   |   | AC005658 | 118397353 | | 61577 | 0 | 0 | 61577 |
S/G/Y/R/B/O |
NT_008902 | AL356419 | 118585055 | 3 |   |   | AC005659 | 118397353 | | 112475 | 0 | 0 | 112475 |
S/G/Y/R/B/O |
NT_008902 | AL356419 | 118585055 | 3 |   |   | AC006173 | 118397353 | | 67560 | 0 | 0 | 67560 |
S/G/Y/R/B/O |
NT_008902 | AL139121 | 118711187 | 3 | chr10 | NT_008902 | AL513324 | 118751114 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL513324 | 118751114 | 3 | chr10 | NT_008902 | AL390244 | 118880309 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL513324 | 118751114 | 3 |   |   | AC124855 | 118751114 | | 119958 | 0 | 0 | 119958 |
S/G/Y/R/B/O |
NT_008902 | AL390244 | 118880309 | 3 | chr10 | NT_008902 | AC022395 | 118979835 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AC022395 | 118979835 | 3 | chr10 | NT_008902 | AC005879 | 119171504 | 3 | 128835 | 0 | 0 | 128835 |
S/G/Y/R/B/O |
NT_008902 | AC022395 | 118979835 | 3 |   |   | AL356132 | 119171504 | | 95481 | 0 | 20646 | 116127 |
S/G/Y/R/B/O |
NT_008902 | AC005879 | 119171504 | 3 | chr10 | NT_008902 | AL354863 | 119233599 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008902 | AC005879 | 119171504 | 3 |   |   | AL356132 | 118979835 | | 124922 | 0 | 20643 | 145565 |
S/G/Y/R/B/O |
NT_008902 | AL354863 | 119233599 | 3 | chr10 | NT_008902 | AL365498 | 119278370 | 3 | 0 | 1987 | 0 | 1987 |
S/G/Y/R/B/O |
NT_008902 | AL365498 | 119278370 | 3 | chr10 | NT_008902 | AL356074 | 119452874 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_008902 | AL365498 | 119278370 | 3 |   |   | AC005385 | 119278370 | | 126896 | 0 | 0 | 126896 |
S/G/Y/R/B/O |
NT_008902 | AL356074 | 119452874 | 3 | chr10 | NT_008902 | AL356865 | 119521061 | 3 | 0 | 0 | 1650 | 1650 |
S/G/Y/R/B/O |
NT_008902 | AL356074 | 119452874 | 3 |   |   | AC067895 | 119452874 | | 43167 | 0 | 5347 | 48514 |
S/G/Y/R/B/O |
NT_008902 | AL356865 | 119521061 | 3 | chr10 | NT_008902 | AL139407 | 119675665 | 3 | 0 | 1993 | 0 | 1993 |
S/G/Y/R/B/O |
NT_008902 | AL356865 | 119521061 | 3 |   |   | AC067895 | 119278370 | | 77933 | 0 | 19638 | 97571 |
S/G/Y/R/B/O |
NT_008902 | AL139407 | 119675665 | 3 | chr10 | NT_008902 | AL157388 | 119739555 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL157388 | 119739555 | 3 | chr10 | NT_008902 | AL157788 | 119920937 | 3 | 0 | 0 | 1619 | 1619 |
S/G/Y/R/B/O |
NT_008902 | AL157388 | 119739555 | 3 |   |   | AL355175 | 119920937 | | 35925 | 0 | 14987 | 50912 |
S/G/Y/R/B/O |
NT_008902 | AL157788 | 119920937 | 3 | chr10 | NT_008902 | AL355598 | 120038041 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL157788 | 119920937 | 3 |   |   | AC026587 | 119920937 | | 31446 | 3184 | 0 | 34630 |
S/G/Y/R/B/O |
NT_008902 | AL157788 | 119920937 | 3 |   |   | AL355175 | 119739555 | | 37899 | 2931 | 23610 | 64440 |
S/G/Y/R/B/O |
NT_008902 | AL355598 | 120038041 | 3 | chr10 | NT_008902 | AL355861 | 120164269 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL355598 | 120038041 | 3 |   |   | AC026587 | 120038041 | | 54459 | 10976 | 16507 | 81942 |
S/G/Y/R/B/O |
NT_008902 | AL355598 | 120038041 | 3 |   |   | AC044815 | 120038041 | | 57457 | 13535 | 27304 | 98296 |
S/G/Y/R/B/O |
NT_008902 | AL355861 | 120164269 | 3 | chr10 | NT_008902 | AL583824 | 120330797 | 3 | 2001 | 0 | 0 | 2001 |
S/G/Y/R/B/O |
NT_008902 | AL355861 | 120164269 | 3 |   |   | AC019280 | 120164269 | | 105135 | 0 | 1498 | 106633 |
S/G/Y/R/B/O |
NT_008902 | AL355861 | 120164269 | 3 |   |   | AC044815 | 120164269 | | 22248 | 9320 | 2210 | 33778 |
S/G/Y/R/B/O |
NT_008902 | AL355861 | 120164269 | 3 |   |   | AL133550 | 120164269 | | 36637 | 8356 | 12417 | 57410 |
S/G/Y/R/B/O |
NT_008902 | AL583824 | 120330797 | 3 | chr10 | NT_008902 | AL355273 | 120384496 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_008902 | AL583824 | 120330797 | 3 |   |   | AC019280 | 120330797 | | 54792 | 0 | 0 | 54792 |
S/G/Y/R/B/O |
NT_008902 | AL355273 | 120384496 | 3 | chr10 | NT_008902 | AL592286 | 120535604 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL592286 | 120535604 | 3 | chr10 | NT_008902 | AC012468 | 120544592 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_008902 | AL592286 | 120535604 | 3 |   |   | AC006190 | 120535604 | | 10940 | 0 | 0 | 10940 |
S/G/Y/R/B/O |
NT_008902 | AC012468 | 120544592 | 3 | chr10 | NT_008902 | AL158014 | 120689169 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AC012468 | 120544592 | 3 |   |   | AC005874 | 120384496 | | 72793 | 0 | 0 | 72793 |
S/G/Y/R/B/O |
NT_008902 | AC012468 | 120544592 | 3 |   |   | AF134471 | 120384496 | | 72785 | 0 | 0 | 72785 |
S/G/Y/R/B/O |
NT_008902 | AL158014 | 120689169 | 3 | chr10 | NT_008902 | AL133461 | 120801413 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL158014 | 120689169 | 3 |   |   | AC005874 | 120535604 | | 106418 | 0 | 0 | 106418 |
S/G/Y/R/B/O |
NT_008902 | AL158014 | 120689169 | 3 |   |   | AF134471 | 120544592 | | 106426 | 0 | 0 | 106426 |
S/G/Y/R/B/O |
NT_008902 | AL133461 | 120801413 | 3 | chr10 | NT_008902 | AC027672 | 120923741 | 3 | 92012 | 0 | 0 | 92012 |
S/G/Y/R/B/O |
NT_008902 | AC027672 | 120923741 | 3 | chr10 | NT_008902 | AL355298 | 121018699 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008902 | AC027672 | 120923741 | 3 |   |   | AC013243 | 120689169 | | 19833 | 0 | 0 | 19833 |
S/G/Y/R/B/O |
NT_008902 | AL355298 | 121018699 | 3 | chr10 | NT_008902 | AL353664 | 121101097 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL353664 | 121101097 | 3 | chr10 | NT_008902 | AC069021 | 121179040 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AC069021 | 121179040 | 3 | chr10 | NT_008902 | AC073587 | 121352504 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008902 | AC073587 | 121352504 | 3 | chr10 | NT_008902 | AL157782 | 121510568 | 3 | 0 | 1989 | 0 | 1989 |
S/G/Y/R/B/O |
NT_008902 | AL157782 | 121510568 | 3 | chr10 | NT_008902 | AC023282 | 121554753 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008902 | AC023282 | 121554753 | 3 | chr10 | NT_008902 | AL596066 | 121721072 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL596066 | 121721072 | 3 | chr10 | NT_008902 | AL391425 | 121723066 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_008902 | AL391425 | 121723066 | 3 | chr10 | NT_008902 | AC010998 | 121880016 | 3 | 0 | 678 | 0 | 678 |
S/G/Y/R/B/O |
NT_008902 | AL391425 | 121723066 | 3 |   |   | AC013357 | 121880016 | | 56299 | 0 | 0 | 56299 |
S/G/Y/R/B/O |
NT_008902 | AC010998 | 121880016 | 3 | chr10 | NT_008902 | AL731680 | 122026171 | 3 | 0 | 0 | 1538 | 1538 |
S/G/Y/R/B/O |
NT_008902 | AC010998 | 121880016 | 3 |   |   | AC013357 | 121721072 | | 72972 | 0 | 0 | 72972 |
S/G/Y/R/B/O |
NT_008902 | AL731680 | 122026171 | 3 | chr10 | NT_008902 | AC024599 | 122087159 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AC024599 | 122087159 | 3 | chr10 | NT_008902 | AL691458 | 122258549 | 3 | 0 | 1992 | 0 | 1992 |
S/G/Y/R/B/O |
NT_008902 | AC024599 | 122087159 | 3 |   |   | AC012690 | 122087159 | | 71625 | 0 | 0 | 71625 |
S/G/Y/R/B/O |
NT_008902 | AL691458 | 122258549 | 3 | chr10 | NT_008902 | AC009989 | 122325682 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AC009989 | 122325682 | 3 | chr10 | NT_008902 | AC009988 | 122499372 | 3 | 31595 | 0 | 0 | 31595 |
S/G/Y/R/B/O |
NT_008902 | AC009988 | 122499372 | 3 | chr10 | NT_008902 | AC026395 | 122642087 | 3 | 54854 | 0 | 0 | 54854 |
S/G/Y/R/B/O |
NT_008902 | AC026395 | 122642087 | 3 | chr10 | NT_008902 | AC025947 | 122759755 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008902 | AC025947 | 122759755 | 3 | chr10 | NT_008902 | AL731542 | 122820866 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_008902 | AL731542 | 122820866 | 3 | chr10 | NT_008902 | AL731566 | 122895848 | 3 | 0 | 1858 | 0 | 1858 |
S/G/Y/R/B/O |
NT_008902 | AL731566 | 122895848 | 3 | chr10 | NT_008902 | AC063960 | 123019770 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_008902 | AC063960 | 123019770 | 3 | chr10 | NT_008902 | AL135793 | 123192446 | 3 | 31687 | 0 | 0 | 31687 |
S/G/Y/R/B/O |
NT_008902 | AL135793 | 123192446 | 3 | chr10 | NT_008902 | AC061711 | 123374620 | 3 | 37790 | 0 | 0 | 37790 |
S/G/Y/R/B/O |
NT_008902 | AC061711 | 123374620 | 3 | chr10 | NT_008902 | AL603764 | 123521848 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_008902 | AL603764 | 123521848 | 1 |   |   |   |   |   |   |   |   |   |
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