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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_009325 | AC131574 | 6216784 | 3 | chr11 | NT_009325 | AC025016 | 6380069 | 3 | 0 | 2569 | 0 | 2569 |
S/G/Y/R/B/O |
NT_009325 | AC131574 | 6216784 | 3 | chr11 | NT_028310 | AC109341 | 5989279 | 3 | 61118 | 0 | 0 | 61118 |
S/G/Y/R/B/O |
NT_009325 | AC131574 | 6216784 | 3 | chr11 | NT_028310 | AC116156 | 6119439 | 3 | 108900 | 0 | 0 | 108900 |
S/G/Y/R/B/O |
NT_009325 | AC131574 | 6216784 | 3 |   |   | AC019088 | 853487 | | 43863 | 8249 | 13638 | 65750 |
S/G/Y/R/B/O |
NT_009325 | AC131574 | 6216784 | 3 |   |   | AC026090 | 6380069 | | 11028 | 0 | 23144 | 34172 |
S/G/Y/R/B/O |
NT_009325 | AC131574 | 6216784 | 3 |   |   | AC111179 | 5989279 | | 25748 | 0 | 0 | 25748 |
S/G/Y/R/B/O |
NT_009325 | AC131574 | 6216784 | 3 |   |   | AC124272 | 6119439 | | 166683 | 2577 | 0 | 169260 |
S/G/Y/R/B/O |
NT_009325 | AC025016 | 6380069 | 3 | chr11 | NT_009325 | AC111177 | 6454909 | 2 | 80814 | 0 | 0 | 80814 |
S/G/Y/R/B/O |
NT_009325 | AC025016 | 6380069 | 3 |   |   | AC019088 | 6119439 | | 22532 | 0 | 0 | 22532 |
S/G/Y/R/B/O |
NT_009325 | AC111177 | 6454909 | 2 | chr11 | NT_009325 | AC022762 | 6565461 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009325 | AC022762 | 6565461 | 3 | chr11 | NT_009325 | AC068733 | 6752065 | 3 | 8743 | 0 | 0 | 8743 |
S/G/Y/R/B/O |
NT_009325 | AC022762 | 6565461 | 3 |   |   | AC021935 | 6380069 | | 161436 | 0 | 1075 | 162511 |
S/G/Y/R/B/O |
NT_009325 | AC022762 | 6565461 | 3 |   |   | AC036216 | 6380069 | | 62557 | 2305 | 11333 | 76195 |
S/G/Y/R/B/O |
NT_009325 | AC068733 | 6752065 | 3 | chr11 | NT_009325 | AC084337 | 6934951 | 3 | 42041 | 0 | 0 | 42041 |
S/G/Y/R/B/O |
NT_009325 | AC068733 | 6752065 | 3 |   |   | AC024232 | 6565461 | | 61636 | 0 | 78827 | 140463 |
S/G/Y/R/B/O |
NT_009325 | AC068733 | 6752065 | 3 |   |   | AC036216 | 6565461 | | 17904 | 3710 | 13991 | 35605 |
S/G/Y/R/B/O |
NT_009325 | AC084337 | 6934951 | 3 | chr11 | NT_009325 | AC009796 | 7005166 | 3 | 67223 | 0 | 0 | 67223 |
S/G/Y/R/B/O |
NT_009325 | AC084337 | 6934951 | 3 |   |   | AC024232 | 7005166 | | 15529 | 0 | 29374 | 44903 |
S/G/Y/R/B/O |
NT_009325 | AC009796 | 7005166 | 3 | chr11 | NT_009325 | AC091564 | 7130086 | 3 | 45851 | 0 | 0 | 45851 |
S/G/Y/R/B/O |
NT_009325 | AC009796 | 7005166 | 3 |   |   | AC027641 | 6752065 | | 45659 | 0 | 0 | 45659 |
S/G/Y/R/B/O |
NT_009325 | AC091564 | 7130086 | 3 | chr11 | NT_009325 | AC087280 | 7295920 | 3 | 0 | 0 | 44170 | 44170 |
S/G/Y/R/B/O |
NT_009325 | AC091564 | 7130086 | 3 |   |   | AC017103 | 7005166 | | 20057 | 0 | 0 | 20057 |
S/G/Y/R/B/O |
NT_009325 | AC091564 | 7130086 | 3 |   |   | AC027641 | 7005166 | | 94584 | 0 | 71145 | 165729 |
S/G/Y/R/B/O |
NT_009325 | AC087280 | 7295920 | 3 | chr11 | NT_009325 | AC090160 | 7424766 | 3 | 30192 | 0 | 0 | 30192 |
S/G/Y/R/B/O |
NT_009325 | AC087280 | 7295920 | 3 |   |   | AC017103 | 7295920 | | 39061 | 1723 | 48223 | 89007 |
S/G/Y/R/B/O |
NT_009325 | AC087280 | 7295920 | 3 |   |   | AC024729 | 7295920 | | 27678 | 0 | 2162 | 29840 |
S/G/Y/R/B/O |
NT_009325 | AC087280 | 7295920 | 3 |   |   | AC027641 | 7295920 | | 17222 | 0 | 18728 | 35950 |
S/G/Y/R/B/O |
NT_009325 | AC087280 | 7295920 | 3 |   |   | AF321237 | 7130086 | | 110367 | 0 | 0 | 110367 |
S/G/Y/R/B/O |
NT_009325 | AC090160 | 7424766 | 3 | chr11 | NT_009325 | AC100875 | 7444761 | 3 | 119779 | 0 | 0 | 119779 |
S/G/Y/R/B/O |
NT_009325 | AC090160 | 7424766 | 3 |   |   | AC017103 | 7130086 | | 11646 | 0 | 15212 | 26858 |
S/G/Y/R/B/O |
NT_009325 | AC090160 | 7424766 | 3 |   |   | AC024729 | 7130086 | | 50614 | 13871 | 36395 | 100880 |
S/G/Y/R/B/O |
NT_009325 | AC090160 | 7424766 | 3 |   |   | AC103728 | 7444761 | | 81292 | 0 | 45543 | 126835 |
S/G/Y/R/B/O |
NT_009325 | AC100875 | 7444761 | 3 | chr11 | NT_009325 | AC027804 | 7639858 | 3 | 42599 | 0 | 0 | 42599 |
S/G/Y/R/B/O |
NT_009325 | AC100875 | 7444761 | 3 |   |   | AC024729 | 7444761 | | 35649 | 11373 | 12623 | 59645 |
S/G/Y/R/B/O |
NT_009325 | AC100875 | 7444761 | 3 |   |   | AC103728 | 7424766 | | 108347 | 0 | 73476 | 181823 |
S/G/Y/R/B/O |
NT_009325 | AC027804 | 7639858 | 3 | chr11 | NT_009325 | AC060799 | 7769501 | 3 | 15778 | 0 | 0 | 15778 |
S/G/Y/R/B/O |
NT_009325 | AC027804 | 7639858 | 3 |   |   | AC024048 | 7424766 | | 31857 | 1678 | 29597 | 63132 |
S/G/Y/R/B/O |
NT_009325 | AC027804 | 7639858 | 3 |   |   | AC103728 | 7444761 | | 29154 | 0 | 0 | 29154 |
S/G/Y/R/B/O |
NT_009325 | AC060799 | 7769501 | 3 | chr11 | NT_009325 | AC107884 | 7905887 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009325 | AC060799 | 7769501 | 3 |   |   | AC024048 | 7444761 | | 65296 | 13568 | 5368 | 84232 |
S/G/Y/R/B/O |
NT_009325 | AC107884 | 7905887 | 3 | chr11 | NT_009325 | AC104237 | 8069009 | 3 | 0 | 1347 | 0 | 1347 |
S/G/Y/R/B/O |
NT_009325 | AC107884 | 7905887 | 3 |   |   | AC012228 | 7639858 | | 53102 | 0 | 0 | 53102 |
S/G/Y/R/B/O |
NT_009325 | AC107884 | 7905887 | 3 |   |   | AC012228 | 7639858 | | 53102 | 0 | 0 | 53102 |
S/G/Y/R/B/O |
NT_009325 | AC104237 | 8069009 | 3 | chr11 | NT_009325 | AC021427 | 8233741 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_009325 | AC104237 | 8069009 | 3 |   |   | AC012228 | 8069009 | | 128601 | 0 | 0 | 128601 |
S/G/Y/R/B/O |
NT_009325 | AC021427 | 8233741 | 3 | chr11 | NT_009325 | AC044810 | 8373179 | 3 | 112094 | 0 | 0 | 112094 |
S/G/Y/R/B/O |
NT_009325 | AC021427 | 8233741 | 3 |   |   | AC022998 | 7905887 | | 71705 | 0 | 27711 | 99416 |
S/G/Y/R/B/O |
NT_009325 | AC044810 | 8373179 | 3 | chr11 | NT_009325 | AC116456 | 8455381 | 3 | 0 | 0 | 869 | 869 |
S/G/Y/R/B/O |
NT_009325 | AC044810 | 8373179 | 3 |   |   | AC022998 | 8233741 | | 23594 | 9615 | 28168 | 61377 |
S/G/Y/R/B/O |
NT_009325 | AC116456 | 8455381 | 3 | chr11 | NT_009325 | AC129895 | 8564045 | 3 | 36850 | 0 | 0 | 36850 |
S/G/Y/R/B/O |
NT_009325 | AC116456 | 8455381 | 3 |   |   | AC074005 | 8373179 | | 42811 | 2752 | 40198 | 85761 |
S/G/Y/R/B/O |
NT_009325 | AC116456 | 8455381 | 3 |   |   | AC074005 | 8373179 | | 42811 | 2752 | 40198 | 85761 |
S/G/Y/R/B/O |
NT_009325 | AC116456 | 8455381 | 3 |   |   | AC124259 | 8373179 | | 43902 | 0 | 0 | 43902 |
S/G/Y/R/B/O |
NT_009325 | AC116456 | 8455381 | 3 |   |   | AC124259 | 8373179 | | 43902 | 0 | 0 | 43902 |
S/G/Y/R/B/O |
NT_009325 | AC116456 | 8455381 | 3 |   |   | AC124259 | 8373179 | | 43902 | 0 | 0 | 43902 |
S/G/Y/R/B/O |
NT_009325 | AC116456 | 8455381 | 3 |   |   | AC124259 | 8373179 | | 43902 | 0 | 0 | 43902 |
S/G/Y/R/B/O |
NT_009325 | AC129895 | 8564045 | 3 | chr11 | NT_009325 | AC091013 | 8648490 | 3 | 55454 | 0 | 0 | 55454 |
S/G/Y/R/B/O |
NT_009325 | AC129895 | 8564045 | 3 |   |   | AC019200 | 8564045 | | 34364 | 3718 | 5661 | 43743 |
S/G/Y/R/B/O |
NT_009325 | AC129895 | 8564045 | 3 |   |   | AC074005 | 8564045 | | 69872 | 1741 | 33670 | 105283 |
S/G/Y/R/B/O |
NT_009325 | AC091013 | 8648490 | 3 | chr11 | NT_009325 | AC105357 | 8872231 | 3 | 4557 | 0 | 0 | 4557 |
S/G/Y/R/B/O |
NT_009325 | AC091013 | 8648490 | 3 |   |   | AC019200 | 8455381 | | 106945 | 5824 | 32519 | 145288 |
S/G/Y/R/B/O |
NT_009325 | AC091013 | 8648490 | 3 |   |   | AC074005 | 8455381 | | 51062 | 0 | 1647 | 52709 |
S/G/Y/R/B/O |
NT_009325 | AC091013 | 8648490 | 3 |   |   | U73635 | 8564045 | | 33600 | 0 | 0 | 33600 |
S/G/Y/R/B/O |
NT_009325 | AC105357 | 8872231 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_009325 | AC105357 | 8872231 | 3 |   |   | AC016718 | 8564045 | | 50723 | 10731 | 33319 | 94773 |
S/G/Y/R/B/O |
NT_009325 | AC105357 | 8872231 | 3 |   |   | AC131243 | 8648490 | | 109100 | 0 | 0 | 109100 |
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