Chromosome 11 - Clone Overlaps

Chromosome 11 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037764	NT_009407	NT_037765	NT_035113	NT_035077	NT_008937	NT_037767	NT_033238
NT_009368	NT_037768	NT_028310	NT_009325	NT_033233	NT_028309	NT_009307	NT_030801
NT_009237	NT_037769	NT_008978	NT_037770	NT_024298	NT_033232	NT_037771	NT_024160
NT_035086	NT_037772	NT_024169	NT_033903	NT_035173	NT_037773	NT_033241	NT_037774
NT_033927	NT_008984	NT_009151	NT_033899

NT_033241

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_033241	AP001453	65676845	3	chr11	NT_033241	AP003774	65843202	3	0	0	74709	74709
S/G/Y/R/B/O	NT_033241	AP001453	65676845	3			AC005848	65676845		39017	0	0	39017
S/G/Y/R/B/O	NT_033241	AP001453	65676845	3			AC015698	65676845		33546	0	23003	56549
S/G/Y/R/B/O	NT_033241	AP001453	65676845	3			AC090391	65676845		19969	40807	26083	86859
S/G/Y/R/B/O	NT_033241	AP001453	65676845	3			AP000572	65676845		29725	2126	4829	36680
S/G/Y/R/B/O	NT_033241	AP001453	65676845	3			AP000573	65676845		32578	11699	16050	60327
S/G/Y/R/B/O	NT_033241	AP001453	65676845	3			AP001380	65676845		21336	13472	23981	58789
S/G/Y/R/B/O	NT_033241	AP003774	65843202	3	chr11	NT_033241	AP005273	65934154	3	0	2090	0	2090
S/G/Y/R/B/O	NT_033241	AP003774	65843202	3			AC015698	65843202		121354	0	26490	147844
S/G/Y/R/B/O	NT_033241	AP003774	65843202	3			AC090391	65843202		36917	32771	22252	91940
S/G/Y/R/B/O	NT_033241	AP003774	65843202	3			AP000572	65843202		29725	6464	22255	58444
S/G/Y/R/B/O	NT_033241	AP003774	65843202	3			AP000573	65843202		19084	5974	15202	40260
S/G/Y/R/B/O	NT_033241	AP003774	65843202	3			AP000628	65843202		30244	0	14135	44379
S/G/Y/R/B/O	NT_033241	AP003774	65843202	3			AP001380	65843202		16651	11948	38680	67279
S/G/Y/R/B/O	NT_033241	AP005273	65934154	3	chr11	NT_033241	AP005669	65983979	3	2011	0	0	2011
S/G/Y/R/B/O	NT_033241	AP005273	65934154	3			AC012153	65934154		48060	0	0	48060
S/G/Y/R/B/O	NT_033241	AP005273	65934154	3			AP000655	65934154		38576	0	9844	48420
S/G/Y/R/B/O	NT_033241	AP005273	65934154	3			U73640	65983979		15030	0	0	15030
S/G/Y/R/B/O	NT_033241	AP005669	65983979	3	chr11	NT_033241	AC044790	65998966	3	2037	0	0	2037
S/G/Y/R/B/O	NT_033241	AP005669	65983979	3			AC012153	65983979		16976	0	0	16976
S/G/Y/R/B/O	NT_033241	AP005669	65983979	3			AP000655	65998966		14255	0	2391	16646
S/G/Y/R/B/O	NT_033241	AC044790	65998966	3	chr11	NT_033241	AC000134	66155223	3	69350	0	0	69350
S/G/Y/R/B/O	NT_033241	AC044790	65998966	3			AC012153	66155223		11341	0	46812	58153
S/G/Y/R/B/O	NT_033241	AC044790	65998966	3			AC090475	66155223		144617	1813	16573	163003
S/G/Y/R/B/O	NT_033241	AC044790	65998966	3			AC091082	66155223		72668	2815	16345	91828
S/G/Y/R/B/O	NT_033241	AC044790	65998966	3			AP000655	66155223		39685	1809	8128	49622
S/G/Y/R/B/O	NT_033241	AC044790	65998966	3			AP001092	66155223		110297	7728	18595	136620
S/G/Y/R/B/O	NT_033241	AC044790	65998966	3			AP001462	66155223		51221	11130	11195	73546
S/G/Y/R/B/O	NT_033241	AC000134	66155223	3	chr11	NT_033241	AP001187	66300725	3	57336	0	0	57336
S/G/Y/R/B/O	NT_033241	AC000134	66155223	3			AC090316	65998966		75511	3399	8911	87821
S/G/Y/R/B/O	NT_033241	AC000134	66155223	3			AC090368	65998966		51679	0	35048	86727
S/G/Y/R/B/O	NT_033241	AC000134	66155223	3			AC090475	65998966		55396	0	12215	67611
S/G/Y/R/B/O	NT_033241	AC000134	66155223	3			AC091082	65998966		52717	0	77993	130710
S/G/Y/R/B/O	NT_033241	AC000134	66155223	3			AP000575	65998966		28178	4624	18934	51736
S/G/Y/R/B/O	NT_033241	AC000134	66155223	3			AP000928	65998966		44681	2579	19056	66316
S/G/Y/R/B/O	NT_033241	AC000134	66155223	3			AP001092	65998966		62801	2466	865	66132
S/G/Y/R/B/O	NT_033241	AC000134	66155223	3			AP001462	66300725		84453	12995	14258	111706
S/G/Y/R/B/O	NT_033241	AC000134	66155223	3			AP001558	66300725		25487	11824	23425	60736
S/G/Y/R/B/O	NT_033241	AC000134	66155223	3			Y12335	66300725		89328	4700	1610	95638
S/G/Y/R/B/O	NT_033241	AP001187	66300725	3	chr11	NT_033241	AP000436	66415100	3	23761	0	0	23761
S/G/Y/R/B/O	NT_033241	AP001187	66300725	3			AC000159	66155223		101700	0	0	101700
S/G/Y/R/B/O	NT_033241	AP001187	66300725	3			AC055871	66155223		18871	0	0	18871
S/G/Y/R/B/O	NT_033241	AP001187	66300725	3			AC090316	66155223		137798	5016	1694	144508
S/G/Y/R/B/O	NT_033241	AP001187	66300725	3			AC090368	66155223		84373	0	22111	106484
S/G/Y/R/B/O	NT_033241	AP001187	66300725	3			AP000814	66415100		32535	11281	9786	53602
S/G/Y/R/B/O	NT_033241	AP001187	66300725	3			AP000928	66415100		62479	2990	31017	96486
S/G/Y/R/B/O	NT_033241	AP001187	66300725	3			AP001558	66415100		71017	16735	24255	112007
S/G/Y/R/B/O	NT_033241	AP001187	66300725	3			Y12335	66415100		33108	0	0	33108
S/G/Y/R/B/O	NT_033241	AP000436	66415100	3	chr11	NT_033241	AP003068	66508466	3	19408	0	0	19408
S/G/Y/R/B/O	NT_033241	AP000436	66415100	3			AC000159	66415100		30427	0	0	30427
S/G/Y/R/B/O	NT_033241	AP000436	66415100	3			AC055871	66415100		39138	6371	63494	109003
S/G/Y/R/B/O	NT_033241	AP000436	66415100	3			AP000814	66415100		21969	4518	18128	44615
S/G/Y/R/B/O	NT_033241	AP003068	66508466	3	chr11	NT_033241	AC000353	66676949	3	15705	0	0	15705
S/G/Y/R/B/O	NT_033241	AP003068	66508466	3			AC051660	66676949		82393	0	11185	93578
S/G/Y/R/B/O	NT_033241	AP003068	66508466	3			AC055871	66676949		50153	0	20035	70188
S/G/Y/R/B/O	NT_033241	AP003068	66508466	3			AC090297	66676949		22661	4263	0	26924
S/G/Y/R/B/O	NT_033241	AP003068	66508466	3			AC090591	66676949		153509	11387	18433	183329
S/G/Y/R/B/O	NT_033241	AP003068	66508466	3			AJ002553	66676949		14459	3199	32505	50163
S/G/Y/R/B/O	NT_033241	AP003068	66508466	3			AP000449	66415100		33702	9372	10421	53495
S/G/Y/R/B/O	NT_033241	AP003068	66508466	3			AP000490	66415100		12440	0	0	12440
S/G/Y/R/B/O	NT_033241	AP003068	66508466	3			AP000678	66415100		18084	3403	9841	31328
S/G/Y/R/B/O	NT_033241	AP003068	66508466	3			AP000828	66415100		12401	0	5383	17784
S/G/Y/R/B/O	NT_033241	AC000353	66676949	3	chr11	NT_033241	AP000769	66894307	3	11031	0	0	11031
S/G/Y/R/B/O	NT_033241	AC000353	66676949	3			AC090297	66415100		86198	8472	49850	144520
S/G/Y/R/B/O	NT_033241	AC000353	66676949	3			AC090390	66415100		138345	2703	37248	178296
S/G/Y/R/B/O	NT_033241	AC000353	66676949	3			AP000441	66415100		25711	3535	0	29246
S/G/Y/R/B/O	NT_033241	AC000353	66676949	3			AP000483	66415100		40783	1519	9635	51937
S/G/Y/R/B/O	NT_033241	AC000353	66676949	3			AP000490	66415100		29406	4858	19333	53597
S/G/Y/R/B/O	NT_033241	AC000353	66676949	3			AP000828	66894307		68954	6463	17682	93099
S/G/Y/R/B/O	NT_033241	AC000353	66676949	3			AP000944	66894307		29371	27984	61148	118503
S/G/Y/R/B/O	NT_033241	AP000769	66894307	3	chr11	NT_033241	AP001362	66998068	3	0	0	29228	29228
S/G/Y/R/B/O	NT_033241	AP000769	66894307	3			AP000441	66676949		22071	0	11052	33123
S/G/Y/R/B/O	NT_033241	AP000769	66894307	3			AP000579	66676949		18090	3601	34782	56473
S/G/Y/R/B/O	NT_033241	AP000769	66894307	3			AP000803	66676949		16011	2829	17613	36453
S/G/Y/R/B/O	NT_033241	AP000769	66894307	3			AP000944	66676949		15396	4926	1630	21952
S/G/Y/R/B/O	NT_033241	AP000769	66894307	3			AP001459	66998068		29288	0	9404	38692
S/G/Y/R/B/O	NT_033241	AP001362	66998068	3	chr11	NT_033241	AP001266	67179920	3	0	0	0	0
S/G/Y/R/B/O	NT_033241	AP001362	66998068	3			AC022488	66998068		14940	0	20949	35889
S/G/Y/R/B/O	NT_033241	AP001362	66998068	3			AP000579	66998068		14628	2077	5050	21755
S/G/Y/R/B/O	NT_033241	AP001362	66998068	3			AP000803	66894307		67548	4798	29479	101825
S/G/Y/R/B/O	NT_033241	AP001362	66998068	3			AP001459	66894307		57706	17839	26845	102390
S/G/Y/R/B/O	NT_033241	AP001266	67179920	3	chr11	NT_033241	AP001201	67325270	3	0	0	0	0
S/G/Y/R/B/O	NT_033241	AP001266	67179920	3			AP000631	66894307		18266	1650	9460	29376
S/G/Y/R/B/O	NT_033241	AP001266	67179920	3			AP000677	66894307		13112	0	9834	22946
S/G/Y/R/B/O	NT_033241	AP001266	67179920	3			AP001444	66894307		40811	13343	10924	65078
S/G/Y/R/B/O	NT_033241	AP001266	67179920	3			AP001920	66894307		11298	0	0	11298
S/G/Y/R/B/O	NT_033241	AP001201	67325270	3	chr11	NT_033241	AC008102	67496496	3	3252	0	0	3252
S/G/Y/R/B/O	NT_033241	AP001201	67325270	3			AC009470	67496496		90068	0	0	90068
S/G/Y/R/B/O	NT_033241	AP001201	67325270	3			AP000586	67496496		25970	11388	14413	51771
S/G/Y/R/B/O	NT_033241	AP001201	67325270	3			AP000592	67496496		51367	8550	2150	62067
S/G/Y/R/B/O	NT_033241	AP001201	67325270	3			AP000677	67496496		38520	2029	4763	45312
S/G/Y/R/B/O	NT_033241	AP001201	67325270	3			AP001191	67496496		60728	14042	12000	86770
S/G/Y/R/B/O	NT_033241	AP001201	67325270	3			AP001285	67496496		18067	5366	13319	36752
S/G/Y/R/B/O	NT_033241	AP001201	67325270	3			AP001920	67496496		68774	0	14808	83582
S/G/Y/R/B/O	NT_033241	AC008102	67496496	3	chr11	NT_033241	AC069080	67620033	3	30836	0	0	30836
S/G/Y/R/B/O	NT_033241	AC008102	67496496	3			AC025132	67496496		126331	0	0	126331
S/G/Y/R/B/O	NT_033241	AC008102	67496496	3			AP000822	67620033		45452	28214	12316	85982
S/G/Y/R/B/O	NT_033241	AC008102	67496496	3			AP001812	67325270		17911	8242	8366	34519
S/G/Y/R/B/O	NT_033241	AC069080	67620033	3	chr11	NT_033241	AP000759	67665138	3	32546	0	0	32546
S/G/Y/R/B/O	NT_033241	AC069080	67620033	3			AC025132	67496496		49464	0	0	49464
S/G/Y/R/B/O	NT_033241	AC069080	67620033	3			AP000822	67665138		15268	4404	11090	30762
S/G/Y/R/B/O	NT_033241	AC069080	67620033	3			AP001812	67665138		25598	3370	3584	32552
S/G/Y/R/B/O	NT_033241	AP000759	67665138	3	chr11	NT_033241	AP001107	67710638	3	2005	0	0	2005
S/G/Y/R/B/O	NT_033241	AP000759	67665138	3			AP000630	67620033		11572	0	0	11572
S/G/Y/R/B/O	NT_033241	AP000759	67665138	3			AP001812	67710638		37520	2268	4992	44780
S/G/Y/R/B/O	NT_033241	AP001107	67710638	3	chr11	NT_033241	AP002748	67905293	3	0	0	0	0
S/G/Y/R/B/O	NT_033241	AP001107	67710638	3			AC027270	67710638		23199	2290	1193	26682
S/G/Y/R/B/O	NT_033241	AP001107	67710638	3			AP000630	67710638		23952	12207	5568	41727
S/G/Y/R/B/O	NT_033241	AP001107	67710638	3			AP001812	67665138		10248	6401	2625	19274
S/G/Y/R/B/O	NT_033241	AP002748	67905293	3	chr11	NT_033241	AP001157	68051798	3	21949	0	0	21949
S/G/Y/R/B/O	NT_033241	AP002748	67905293	3			AC019220	67665138		61819	0	36166	97985
S/G/Y/R/B/O	NT_033241	AP002748	67905293	3			AC027270	67665138		76578	0	6717	83295
S/G/Y/R/B/O	NT_033241	AP002748	67905293	3			AP000481	67665138		19013	2328	5714	27055
S/G/Y/R/B/O	NT_033241	AP002748	67905293	3			AP001100	67665138		15932	2968	14582	33482
S/G/Y/R/B/O	NT_033241	AP001157	68051798	3	chr11	NT_033241	AP000485	68230231	3	0	0	0	0
S/G/Y/R/B/O	NT_033241	AP001157	68051798	3			AC019220	68051798		44919	0	31784	76703
S/G/Y/R/B/O	NT_033241	AP001157	68051798	3			AP000481	68051798		18819	2328	18313	39460
S/G/Y/R/B/O	NT_033241	AP001157	68051798	3			AP000671	68051798		53238	7677	37442	98357
S/G/Y/R/B/O	NT_033241	AP001157	68051798	3			AP001100	68051798		58567	12581	31528	102676
S/G/Y/R/B/O	NT_033241	AP001157	68051798	3			AP001319	68051798		37528	5926	27873	71327
S/G/Y/R/B/O	NT_033241	AP001157	68051798	3			AP001385	68051798		31995	10942	51426	94363
S/G/Y/R/B/O	NT_033241	AP000485	68230231	3	chr11	NT_033241	AP003176	68314223	3	9445	0	0	9445
S/G/Y/R/B/O	NT_033241	AP000485	68230231	3			AP001319	67905293		19693	11874	32141	63708
S/G/Y/R/B/O	NT_033241	AP000485	68230231	3			AP001385	67905293		11592	4196	16318	32106
S/G/Y/R/B/O	NT_033241	AP003176	68314223	3	chr11	NT_033241	AP000729	68487545	3	46225	0	0	46225
S/G/Y/R/B/O	NT_033241	AP003176	68314223	3			AC018798	68314223		94502	5940	29810	130252
S/G/Y/R/B/O	NT_033241	AP000729	68487545	3	chr11	NT_033241	AP001885	68598589	1	6498	0	0	6498
S/G/Y/R/B/O	NT_033241	AP000729	68487545	3			AP001261	68487545		10102	13971	15317	39390
S/G/Y/R/B/O	NT_033241	AP001885	68598589	1	chr11	NT_033241	AP002776	68632606	1	41826	14667	34321	90814
S/G/Y/R/B/O	NT_033241	AP002776	68632606	1	chr11	NT_033241	AP003419	68783307	3	4597	2477	1676	8750
S/G/Y/R/B/O	NT_033241	AP003419	68783307	3	chr11	NT_033241	AP001184	68947193	3	0	0	4353	4353
S/G/Y/R/B/O	NT_033241	AP003419	68783307	3			AP002437	68947193		37217	13823	33417	84457
S/G/Y/R/B/O	NT_033241	AP001184	68947193	3	chr11	NT_033241	AP003385	69067379	3	0	0	1697	1697
S/G/Y/R/B/O	NT_033241	AP001184	68947193	3			AC021987	68632606		26113	2821	8511	37445
S/G/Y/R/B/O	NT_033241	AP001184	68947193	3			AP000668	68632606		27755	4298	15749	47802
S/G/Y/R/B/O	NT_033241	AP003385	69067379	3	chr11	NT_033241	AP003716	69239452	3	18213	0	0	18213
S/G/Y/R/B/O	NT_033241	AP003385	69067379	3			AC021987	68783307		45484	0	6207	51691
S/G/Y/R/B/O	NT_033241	AP003716	69239452	3	chr11	NT_033241	AC004924	69386426	3	0	0	0	0
S/G/Y/R/B/O	NT_033241	AP003716	69239452	3			AC034259	69239452		43657	0	0	43657
S/G/Y/R/B/O	NT_033241	AC004924	69386426	3	chr11	NT_033241	AC004923	69399319	3	0	0	200	200
S/G/Y/R/B/O	NT_033241	AC004923	69399319	3	chr11	NT_033241	AP002807	69493970	3	0	1612	0	1612
S/G/Y/R/B/O	NT_033241	AC004923	69399319	3			AC034259	69386426		94716	0	0	94716
S/G/Y/R/B/O	NT_033241	AP002807	69493970	3	chr11	NT_033241	AP002992	69555789	3	20240	0	0	20240
S/G/Y/R/B/O	NT_033241	AP002807	69493970	3			AC034259	69399319		56416	0	0	56416
S/G/Y/R/B/O	NT_033241	AP002992	69555789	3	chr11	NT_033241	AP002813	69727112	3	129264	0	0	129264
S/G/Y/R/B/O	NT_033241	AP002992	69555789	3			AC024127	69555789		89158	0	0	89158
S/G/Y/R/B/O	NT_033241	AP002992	69555789	3			AC034259	69555789		13230	0	0	13230
S/G/Y/R/B/O	NT_033241	AP002813	69727112	3	chr11	NT_033241	AP002366	69785287	3	53196	0	0	53196
S/G/Y/R/B/O	NT_033241	AP002813	69727112	3			AC024127	69727112		111802	0	0	111802
S/G/Y/R/B/O	NT_033241	AP002813	69727112	3			AC051652	69727112		27766	3432	9005	40203
S/G/Y/R/B/O	NT_033241	AP002366	69785287	3	chr11	NT_033241	AP000807	69879472	3	145286	0	0	145286
S/G/Y/R/B/O	NT_033241	AP002366	69785287	3			AC024123	69555789		136285	0	0	136285
S/G/Y/R/B/O	NT_033241	AP002366	69785287	3			AC024126	69555789		35004	0	0	35004
S/G/Y/R/B/O	NT_033241	AP002366	69785287	3			AC024127	69555789		17991	0	0	17991
S/G/Y/R/B/O	NT_033241	AP002366	69785287	3			AC051652	69555789		89652	4792	19382	113826
S/G/Y/R/B/O	NT_033241	AP002366	69785287	3			AP001075	69879472		18641	9718	20825	49184
S/G/Y/R/B/O	NT_033241	AP000807	69879472	3	chr11	NT_033241	AP001788	69989768	3	7072	0	0	7072
S/G/Y/R/B/O	NT_033241	AP000807	69879472	3			AC024123	69727112		135893	0	0	135893
S/G/Y/R/B/O	NT_033241	AP000807	69879472	3			AC024124	69727112		12320	0	0	12320
S/G/Y/R/B/O	NT_033241	AP000807	69879472	3			AC024126	69727112		34997	0	0	34997
S/G/Y/R/B/O	NT_033241	AP000807	69879472	3			AC051652	69727112		73508	0	13988	87496
S/G/Y/R/B/O	NT_033241	AP000807	69879472	3			AP001075	69727112		39444	14933	24905	79282
S/G/Y/R/B/O	NT_033241	AP001788	69989768	3	chr11	NT_033241	AP003096	70170936	3	122997	0	0	122997
S/G/Y/R/B/O	NT_033241	AP001788	69989768	3			AC026872	69785287		10056	0	0	10056
S/G/Y/R/B/O	NT_033241	AP001788	69989768	3			AP001075	69879472		35700	0	1418	37118
S/G/Y/R/B/O	NT_033241	AP003096	70170936	3	chr11	NT_033241	AP003732	70222352	3	13859	0	0	13859
S/G/Y/R/B/O	NT_033241	AP003096	70170936	3			AC026872	70170936		14119	1510	0	15629
S/G/Y/R/B/O	NT_033241	AP003732	70222352	3	chr11	NT_033241	AP000808	70401633	3	98652	0	0	98652
S/G/Y/R/B/O	NT_033241	AP003732	70222352	3			AC019166	70222352		45644	4700	67897	118241
S/G/Y/R/B/O	NT_033241	AP003732	70222352	3			AP000444	70222352		25749	13462	8341	47552
S/G/Y/R/B/O	NT_033241	AP000808	70401633	3	chr11	NT_033241	AP003071	70479254	3	0	0	0	0
S/G/Y/R/B/O	NT_033241	AP000808	70401633	3			AC019166	70170936		17583	2056	23202	42841
S/G/Y/R/B/O	NT_033241	AP000808	70401633	3			AP000444	70170936		15749	22154	7182	45085
S/G/Y/R/B/O	NT_033241	AP003071	70479254	3	chr11	NT_033241	AP005140	70641671	3	32775	0	0	32775
S/G/Y/R/B/O	NT_033241	AP003071	70479254	3			AC019124	70222352		78849	2799	65194	146842
S/G/Y/R/B/O	NT_033241	AP003071	70479254	3			AP003779	70222352		64095	2180	26638	92913
S/G/Y/R/B/O	NT_033241	AP005140	70641671	3	chr11	NT_033241	AP005378	70721477	3	27865	0	0	27865
S/G/Y/R/B/O	NT_033241	AP005140	70641671	3			AC019124	70641671		19115	0	12248	31363
S/G/Y/R/B/O	NT_033241	AP005378	70721477	3	chr11	NT_033241	AP005379	70735455	3	12670	0	0	12670
S/G/Y/R/B/O	NT_033241	AP005379	70735455	3	chr11	NT_033241	AP005232	70755827	3	23734	0	0	23734
S/G/Y/R/B/O	NT_033241	AP005232	70755827	3