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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_028310 | AC060812 | 3887232 | 1 | chr11 | NT_028310 | AC090587 | 3980066 | 3 | 86959 | 0 | 0 | 86959 |
S/G/Y/R/B/O |
NT_028310 | AC060812 | 3887232 | 1 |   |   | AC018803 | 1016106 | | 16827 | 7253 | 11601 | 35681 |
S/G/Y/R/B/O |
NT_028310 | AC060812 | 3887232 | 1 |   |   | AC018803 | 1016106 | | 16827 | 7253 | 11601 | 35681 |
S/G/Y/R/B/O |
NT_028310 | AC090587 | 3980066 | 3 | chr11 | NT_028310 | AC090804 | 4145525 | 3 | 2835 | 0 | 0 | 2835 |
S/G/Y/R/B/O |
NT_028310 | AC090587 | 3980066 | 3 |   |   | AC018803 | 3980066 | | 72871 | 7314 | 30464 | 110649 |
S/G/Y/R/B/O |
NT_028310 | AC090804 | 4145525 | 3 | chr11 | NT_028310 | AC087441 | 4188034 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028310 | AC090804 | 4145525 | 3 |   |   | AC018888 | 4145525 | | 19336 | 1650 | 70 | 21056 |
S/G/Y/R/B/O |
NT_028310 | AC087441 | 4188034 | 3 | chr11 | NT_028310 | AC107970 | 4315069 | 3 | 124803 | 0 | 0 | 124803 |
S/G/Y/R/B/O |
NT_028310 | AC087441 | 4188034 | 3 |   |   | AC018888 | 3980066 | | 90365 | 7108 | 12586 | 110059 |
S/G/Y/R/B/O |
NT_028310 | AC087441 | 4188034 | 3 |   |   | AC090831 | 3980066 | | 81645 | 0 | 0 | 81645 |
S/G/Y/R/B/O |
NT_028310 | AC107970 | 4315069 | 3 | chr11 | NT_028310 | AC015689 | 4345518 | 3 | 23607 | 0 | 0 | 23607 |
S/G/Y/R/B/O |
NT_028310 | AC107970 | 4315069 | 3 |   |   | AC018888 | 4345518 | | 73737 | 9497 | 3987 | 87221 |
S/G/Y/R/B/O |
NT_028310 | AC107970 | 4315069 | 3 |   |   | AC090831 | 4188034 | | 71502 | 0 | 0 | 71502 |
S/G/Y/R/B/O |
NT_028310 | AC015689 | 4345518 | 3 | chr11 | NT_028310 | AC016035 | 4487075 | 1 | 0 | 0 | 16912 | 16912 |
S/G/Y/R/B/O |
NT_028310 | AC015689 | 4345518 | 3 |   |   | AC090831 | 4487075 | | 32993 | 0 | 0 | 32993 |
S/G/Y/R/B/O |
NT_028310 | AC016035 | 4487075 | 1 | chr11 | NT_028310 | AC018793 | 4602284 | 1 | 7339 | 0 | 20529 | 27868 |
S/G/Y/R/B/O |
NT_028310 | AC018793 | 4602284 | 1 | chr11 | NT_028310 | AC009758 | 4686782 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028310 | AC009758 | 4686782 | 3 | chr11 | NT_028310 | AC010930 | 4828267 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028310 | AC009758 | 4686782 | 3 |   |   | AC079759 | 4487075 | | 17079 | 4840 | 14125 | 36044 |
S/G/Y/R/B/O |
NT_028310 | AC010930 | 4828267 | 3 | chr11 | NT_028310 | AC090719 | 4911210 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028310 | AC010930 | 4828267 | 3 |   |   | AC025249 | 4487075 | | 48939 | 0 | 0 | 48939 |
S/G/Y/R/B/O |
NT_028310 | AC010930 | 4828267 | 3 |   |   | AC079759 | 4487075 | | 13911 | 9506 | 37026 | 60443 |
S/G/Y/R/B/O |
NT_028310 | AC090719 | 4911210 | 3 | chr11 | NT_028310 | AC103710 | 5032096 | 3 | 12153 | 0 | 0 | 12153 |
S/G/Y/R/B/O |
NT_028310 | AC090719 | 4911210 | 3 |   |   | AC025249 | 4487075 | | 169756 | 0 | 0 | 169756 |
S/G/Y/R/B/O |
NT_028310 | AC090719 | 4911210 | 3 |   |   | AC105936 | 5032096 | | 35692 | 0 | 0 | 35692 |
S/G/Y/R/B/O |
NT_028310 | AC103710 | 5032096 | 3 | chr11 | NT_028310 | AC011711 | 5171874 | 3 | 80090 | 0 | 0 | 80090 |
S/G/Y/R/B/O |
NT_028310 | AC103710 | 5032096 | 3 |   |   | AC025249 | 5171874 | | 12146 | 0 | 0 | 12146 |
S/G/Y/R/B/O |
NT_028310 | AC011711 | 5171874 | 3 | chr11 | NT_028310 | AC018375 | 5241132 | 3 | 31184 | 0 | 0 | 31184 |
S/G/Y/R/B/O |
NT_028310 | AC018375 | 5241132 | 3 | chr11 | NT_028310 | AC090893 | 5359855 | 3 | 114161 | 0 | 0 | 114161 |
S/G/Y/R/B/O |
NT_028310 | AC018375 | 5241132 | 3 | chr11 | NT_028310 | AC113331 | 5437216 | 3 | 32828 | 0 | 0 | 32828 |
S/G/Y/R/B/O |
NT_028310 | AC018375 | 5241132 | 3 |   |   | AC020597 | 5171874 | | 46749 | 4902 | 21205 | 72856 |
S/G/Y/R/B/O |
NT_028310 | AC018375 | 5241132 | 3 |   |   | AL590419 | 5437216 | | 48315 | 0 | 0 | 48315 |
S/G/Y/R/B/O |
NT_028310 | AC090893 | 5359855 | 3 | chr11 | NT_028310 | AC113331 | 5437216 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028310 | AC090893 | 5359855 | 3 | chr11 | NT_028310 | AC129505 | 5449643 | 1 | 69072 | 0 | 0 | 69072 |
S/G/Y/R/B/O |
NT_028310 | AC090893 | 5359855 | 3 | chr11 | NT_028310 | AC129505 | 5449643 | 1 | 69072 | 0 | 0 | 69072 |
S/G/Y/R/B/O |
NT_028310 | AC090893 | 5359855 | 3 |   |   | AC020597 | 5241132 | | 94856 | 6553 | 34076 | 135485 |
S/G/Y/R/B/O |
NT_028310 | AC113331 | 5437216 | 3 | chr11 | NT_028310 | AC129505 | 5449643 | 1 | 68813 | 0 | 0 | 68813 |
S/G/Y/R/B/O |
NT_028310 | AC113331 | 5437216 | 3 | chr11 | NT_028310 | AC018375 | 5241132 | 3 | 32828 | 0 | 0 | 32828 |
S/G/Y/R/B/O |
NT_028310 | AC113331 | 5437216 | 3 |   |   | AC020597 | 5241132 | | 51975 | 6162 | 9706 | 67843 |
S/G/Y/R/B/O |
NT_028310 | AC113331 | 5437216 | 3 |   |   | AL590419 | 5449643 | | 143436 | 0 | 0 | 143436 |
S/G/Y/R/B/O |
NT_028310 | AC129505 | 5449643 | 1 | chr11 | NT_028310 | AC104389 | 5520998 | 3 | 46481 | 0 | 0 | 46481 |
S/G/Y/R/B/O |
NT_028310 | AC129505 | 5449643 | 1 | chr11 | NT_028310 | AC090893 | 5359855 | 3 | 69072 | 0 | 0 | 69072 |
S/G/Y/R/B/O |
NT_028310 | AC129505 | 5449643 | 1 | chr11 | NT_028310 | AC090893 | 5359855 | 3 | 69072 | 0 | 0 | 69072 |
S/G/Y/R/B/O |
NT_028310 | AC129505 | 5449643 | 1 |   |   | AC020597 | 5449643 | | 33729 | 6184 | 15326 | 55239 |
S/G/Y/R/B/O |
NT_028310 | AC129505 | 5449643 | 1 |   |   | AC020597 | 5449643 | | 33729 | 6184 | 15326 | 55239 |
S/G/Y/R/B/O |
NT_028310 | AC104389 | 5520998 | 3 | chr11 | NT_028310 | AC087380 | 5677587 | 3 | 0 | 0 | 50166 | 50166 |
S/G/Y/R/B/O |
NT_028310 | AC087380 | 5677587 | 3 | chr11 | NT_028310 | AC015691 | 5878310 | 3 | 92066 | 0 | 0 | 92066 |
S/G/Y/R/B/O |
NT_028310 | AC087380 | 5677587 | 3 |   |   | AC011647 | 5449643 | | 88292 | 0 | 0 | 88292 |
S/G/Y/R/B/O |
NT_028310 | AC087380 | 5677587 | 3 |   |   | AC026083 | 5878310 | | 65576 | 5495 | 77091 | 148162 |
S/G/Y/R/B/O |
NT_028310 | AC015691 | 5878310 | 3 | chr11 | NT_028310 | AC109341 | 5989279 | 3 | 72345 | 0 | 0 | 72345 |
S/G/Y/R/B/O |
NT_028310 | AC015691 | 5878310 | 3 |   |   | AC011647 | 5520998 | | 143161 | 0 | 0 | 143161 |
S/G/Y/R/B/O |
NT_028310 | AC015691 | 5878310 | 3 |   |   | AC026083 | 5520998 | | 33256 | 5495 | 42834 | 81585 |
S/G/Y/R/B/O |
NT_028310 | AC015691 | 5878310 | 3 |   |   | AC026090 | 5520998 | | 39947 | 1995 | 6248 | 48190 |
S/G/Y/R/B/O |
NT_028310 | AC015691 | 5878310 | 3 |   |   | AC111179 | 5989279 | | 107503 | 0 | 0 | 107503 |
S/G/Y/R/B/O |
NT_028310 | AC109341 | 5989279 | 3 | chr11 | NT_028310 | AC116156 | 6119439 | 3 | 86633 | 0 | 0 | 86633 |
S/G/Y/R/B/O |
NT_028310 | AC109341 | 5989279 | 3 | chr11 | NT_009325 | AC131574 | 6216784 | 3 | 61118 | 0 | 0 | 61118 |
S/G/Y/R/B/O |
NT_028310 | AC109341 | 5989279 | 3 |   |   | AC011647 | 5989279 | | 18188 | 0 | 0 | 18188 |
S/G/Y/R/B/O |
NT_028310 | AC109341 | 5989279 | 3 |   |   | AC019088 | 5878310 | | 10449 | 5345 | 4107 | 19901 |
S/G/Y/R/B/O |
NT_028310 | AC109341 | 5989279 | 3 |   |   | AC026090 | 5878310 | | 79507 | 0 | 44995 | 124502 |
S/G/Y/R/B/O |
NT_028310 | AC109341 | 5989279 | 3 |   |   | AC111179 | 5878310 | | 164888 | 0 | 0 | 164888 |
S/G/Y/R/B/O |
NT_028310 | AC109341 | 5989279 | 3 |   |   | AC124272 | 6119439 | | 72743 | 0 | 0 | 72743 |
S/G/Y/R/B/O |
NT_028310 | AC116156 | 6119439 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_028310 | AC116156 | 6119439 | 3 | chr11 | NT_009325 | AC131574 | 6216784 | 3 | 108900 | 0 | 0 | 108900 |
S/G/Y/R/B/O |
NT_028310 | AC116156 | 6119439 | 3 |   |   | AC019088 | 6216784 | | 24770 | 5340 | 15670 | 45780 |
S/G/Y/R/B/O |
NT_028310 | AC116156 | 6119439 | 3 |   |   | AC026090 | 6216784 | | 20917 | 1191 | 13390 | 35498 |
S/G/Y/R/B/O |
NT_028310 | AC116156 | 6119439 | 3 |   |   | AC111179 | 5989279 | | 51196 | 0 | 0 | 51196 |
S/G/Y/R/B/O |
NT_028310 | AC116156 | 6119439 | 3 |   |   | AC124272 | 5989279 | | 151613 | 0 | 0 | 151613 |
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