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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_028309 | AC100761 | 9466126 | 1 | chr11 | NT_028309 | AC124658 | 9551442 | 3 | 0 | 2285 | 65452 | 67737 |
S/G/Y/R/B/O |
NT_028309 | AC124658 | 9551442 | 3 | chr11 | NT_028309 | AJ400877 | 9723859 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028309 | AC124658 | 9551442 | 3 | chr11 | NT_033233 | AC026894 | 9285674 | 3 | 148585 | 0 | 0 | 148585 |
S/G/Y/R/B/O |
NT_028309 | AC124658 | 9551442 | 3 |   |   | AC011219 | 9551442 | | 89764 | 2727 | 21161 | 113652 |
S/G/Y/R/B/O |
NT_028309 | AJ400877 | 9723859 | 3 | chr11 | NT_028309 | AC026077 | 9829850 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028309 | AC026077 | 9829850 | 1 | chr11 | NT_028309 | AC055845 | 9847072 | 3 | 5031 | 0 | 2471 | 7502 |
S/G/Y/R/B/O |
NT_028309 | AC055845 | 9847072 | 3 | chr11 | NT_028309 | AC132192 | 9990860 | 3 | 11497 | 0 | 0 | 11497 |
S/G/Y/R/B/O |
NT_028309 | AC132192 | 9990860 | 3 | chr11 | NT_028309 | AC127030 | 10092582 | 3 | 32830 | 0 | 0 | 32830 |
S/G/Y/R/B/O |
NT_028309 | AC132192 | 9990860 | 3 |   |   | AC019126 | 9990860 | | 70699 | 0 | 19004 | 89703 |
S/G/Y/R/B/O |
NT_028309 | AC127030 | 10092582 | 3 | chr11 | NT_028309 | AC122179 | 10121847 | 3 | 0 | 0 | 23482 | 23482 |
S/G/Y/R/B/O |
NT_028309 | AC122179 | 10121847 | 3 | chr11 | NT_028309 | AC011979 | 10175579 | 3 | 12197 | 0 | 0 | 12197 |
S/G/Y/R/B/O |
NT_028309 | AC122179 | 10121847 | 3 |   |   | AC019126 | 10175579 | | 51287 | 0 | 0 | 51287 |
S/G/Y/R/B/O |
NT_028309 | AC011979 | 10175579 | 3 | chr11 | NT_028309 | AC026250 | 10318358 | 3 | 11982 | 0 | 0 | 11982 |
S/G/Y/R/B/O |
NT_028309 | AC011979 | 10175579 | 3 |   |   | AC019126 | 10092582 | | 26316 | 0 | 6501 | 32817 |
S/G/Y/R/B/O |
NT_028309 | AC011979 | 10175579 | 3 |   |   | AC025788 | 10092582 | | 20631 | 0 | 6041 | 26672 |
S/G/Y/R/B/O |
NT_028309 | AC026250 | 10318358 | 3 | chr11 | NT_028309 | AC011092 | 10467055 | 3 | 9328 | 0 | 0 | 9328 |
S/G/Y/R/B/O |
NT_028309 | AC026250 | 10318358 | 3 |   |   | AC025788 | 10175579 | | 122189 | 6858 | 11578 | 140625 |
S/G/Y/R/B/O |
NT_028309 | AC026250 | 10318358 | 3 |   |   | AC053531 | 10175579 | | 43969 | 6550 | 23827 | 74346 |
S/G/Y/R/B/O |
NT_028309 | AC011092 | 10467055 | 3 | chr11 | NT_028309 | AC100763 | 10650045 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028309 | AC011092 | 10467055 | 3 |   |   | AC053531 | 10318358 | | 20582 | 5124 | 22776 | 48482 |
S/G/Y/R/B/O |
NT_028309 | AC100763 | 10650045 | 3 | chr11 | NT_028309 | AC015700 | 10767925 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_028309 | AC015700 | 10767925 | 3 | chr11 | NT_028309 | AC080023 | 10841561 | 3 | 55950 | 0 | 0 | 55950 |
S/G/Y/R/B/O |
NT_028309 | AC015700 | 10767925 | 3 |   |   | AC090556 | 10841561 | | 14254 | 0 | 0 | 14254 |
S/G/Y/R/B/O |
NT_028309 | AC080023 | 10841561 | 3 | chr11 | NT_028309 | AC021914 | 11003738 | 3 | 15066 | 0 | 0 | 15066 |
S/G/Y/R/B/O |
NT_028309 | AC080023 | 10841561 | 3 |   |   | AC018539 | 10767925 | | 34250 | 4198 | 30457 | 68905 |
S/G/Y/R/B/O |
NT_028309 | AC080023 | 10841561 | 3 |   |   | AC090556 | 11003738 | | 93075 | 3273 | 1407 | 97755 |
S/G/Y/R/B/O |
NT_028309 | AC021914 | 11003738 | 3 | chr11 | NT_028309 | AC009532 | 11145145 | 3 | 5103 | 0 | 0 | 5103 |
S/G/Y/R/B/O |
NT_028309 | AC021914 | 11003738 | 3 |   |   | AC018539 | 11145145 | | 32666 | 6547 | 11307 | 50520 |
S/G/Y/R/B/O |
NT_028309 | AC009532 | 11145145 | 3 | chr11 | NT_028309 | AC116535 | 11305736 | 2 | 46399 | 0 | 0 | 46399 |
S/G/Y/R/B/O |
NT_028309 | AC009532 | 11145145 | 3 |   |   | AC025744 | 11003738 | | 46401 | 0 | 815 | 47216 |
S/G/Y/R/B/O |
NT_028309 | AC116535 | 11305736 | 2 | chr11 | NT_028309 | AC069360 | 11427385 | 3 | 24407 | 0 | 0 | 24407 |
S/G/Y/R/B/O |
NT_028309 | AC116535 | 11305736 | 2 |   |   | AC025744 | 11145145 | | 191179 | 1807 | 814 | 193800 |
S/G/Y/R/B/O |
NT_028309 | AC069360 | 11427385 | 3 | chr11 | NT_028309 | AC023850 | 11551794 | 3 | 27884 | 0 | 0 | 27884 |
S/G/Y/R/B/O |
NT_028309 | AC023850 | 11551794 | 3 | chr11 | NT_028309 | AC111188 | 11688880 | 3 | 35163 | 0 | 0 | 35163 |
S/G/Y/R/B/O |
NT_028309 | AC023850 | 11551794 | 3 |   |   | AC027101 | 11305736 | | 23688 | 0 | 0 | 23688 |
S/G/Y/R/B/O |
NT_028309 | AC111188 | 11688880 | 3 | chr11 | NT_028309 | AC084243 | 11799930 | 3 | 35235 | 0 | 0 | 35235 |
S/G/Y/R/B/O |
NT_028309 | AC111188 | 11688880 | 3 |   |   | AC027101 | 11551794 | | 76969 | 2500 | 1360 | 80829 |
S/G/Y/R/B/O |
NT_028309 | AC111188 | 11688880 | 3 |   |   | AC027101 | 11551794 | | 76969 | 2500 | 1360 | 80829 |
S/G/Y/R/B/O |
NT_028309 | AC084243 | 11799930 | 3 | chr11 | NT_028309 | AC023946 | 11908225 | 3 | 10603 | 0 | 0 | 10603 |
S/G/Y/R/B/O |
NT_028309 | AC023946 | 11908225 | 3 | chr11 | NT_028309 | AC104031 | 12095605 | 2 | 101627 | 0 | 0 | 101627 |
S/G/Y/R/B/O |
NT_028309 | AC104031 | 12095605 | 2 | chr11 | NT_028309 | AC131935 | 12188994 | 2 | 0 | 0 | 17207 | 17207 |
S/G/Y/R/B/O |
NT_028309 | AC131935 | 12188994 | 2 | chr11 | NT_028309 | AC019317 | 12295284 | 3 | 77953 | 0 | 0 | 77953 |
S/G/Y/R/B/O |
NT_028309 | AC019317 | 12295284 | 3 | chr11 | NT_028309 | AC104383 | 12442120 | 3 | 72905 | 0 | 0 | 72905 |
S/G/Y/R/B/O |
NT_028309 | AC104383 | 12442120 | 3 | chr11 | NT_028309 | AC124276 | 12512549 | 3 | 23888 | 0 | 0 | 23888 |
S/G/Y/R/B/O |
NT_028309 | AC124276 | 12512549 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_028309 | AC124276 | 12512549 | 3 | chr11 | NT_009307 | AC025106 | 12721471 | 3 | 141319 | 0 | 0 | 141319 |
S/G/Y/R/B/O |
NT_028309 | AC124276 | 12512549 | 3 | chr11 | NT_009307 | AC118656 | 12693761 | 3 | 167779 | 0 | 0 | 167779 |
S/G/Y/R/B/O |
NT_028309 | AC124276 | 12512549 | 3 |   |   | AC124275 | 12693761 | | 132736 | 0 | 0 | 132736 |
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