Chromosome 11 - Clone Overlaps

Chromosome 11 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_037764	NT_009407	NT_037765	NT_035113	NT_035077	NT_008937	NT_037767	NT_033238
NT_009368	NT_037768	NT_028310	NT_009325	NT_033233	NT_028309	NT_009307	NT_030801
NT_009237	NT_037769	NT_008978	NT_037770	NT_024298	NT_033232	NT_037771	NT_024160
NT_035086	NT_037772	NT_024169	NT_033903	NT_035173	NT_037773	NT_033241	NT_037774
NT_033927	NT_008984	NT_009151	NT_033899

NT_035173

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_035173	AP002754	62919284	3	chr11	NT_035173	AC004770	63105050	3	66512	0	0	66512
S/G/Y/R/B/O	NT_035173	AP002754	62919284	3			AC025689	62817279		81107	8729	82380	172216
S/G/Y/R/B/O	NT_035173	AP002754	62919284	3			AC064808	62817279		28685	1935	0	30620
S/G/Y/R/B/O	NT_035173	AP002754	62919284	3			AC087848	62817279		164781	0	0	164781
S/G/Y/R/B/O	NT_035173	AP002754	62919284	3			AP002380	62817279		80513	0	781	81294
S/G/Y/R/B/O	NT_035173	AP002754	62919284	3			AP003559	62817279		10924	0	0	10924
S/G/Y/R/B/O	NT_035173	AC004770	63105050	3	chr11	NT_035173	AF139813	63223516	3	34703	0	0	34703
S/G/Y/R/B/O	NT_035173	AC004770	63105050	3			AC004228	62817279		109272	0	0	109272
S/G/Y/R/B/O	NT_035173	AC004770	63105050	3			AC025689	62817279		60613	0	14658	75271
S/G/Y/R/B/O	NT_035173	AC004770	63105050	3			AC084857	62817279		14588	0	33449	48037
S/G/Y/R/B/O	NT_035173	AC004770	63105050	3			AC087848	62817279		74860	2191	0	77051
S/G/Y/R/B/O	NT_035173	AC004770	63105050	3			AP000591	63223516		52744	4552	20827	78123
S/G/Y/R/B/O	NT_035173	AC004770	63105050	3			AP002380	63223516		171334	0	0	171334
S/G/Y/R/B/O	NT_035173	AC004770	63105050	3			U73629	62919284		39278	0	0	39278
S/G/Y/R/B/O	NT_035173	AF139813	63223516	3	chr11	NT_035173	AP003733	63330830	3	0	0	0	0
S/G/Y/R/B/O	NT_035173	AF139813	63223516	3			AC004228	62919284		121354	0	0	121354
S/G/Y/R/B/O	NT_035173	AF139813	63223516	3			AC004588	62919284		18930	0	0	18930
S/G/Y/R/B/O	NT_035173	AF139813	63223516	3			AC004588	62919284		18930	0	0	18930
S/G/Y/R/B/O	NT_035173	AF139813	63223516	3			AC051664	63105050		10083	2857	13752	26692
S/G/Y/R/B/O	NT_035173	AF139813	63223516	3			AC084857	63105050		61801	0	47492	109293
S/G/Y/R/B/O	NT_035173	AF139813	63223516	3			AC087451	63105050		21602	0	0	21602
S/G/Y/R/B/O	NT_035173	AF139813	63223516	3			AP000591	63105050		44024	0	5233	49257
S/G/Y/R/B/O	NT_035173	AF139813	63223516	3			AP002380	63105050		22143	0	0	22143
S/G/Y/R/B/O	NT_035173	AP003733	63330830	3	chr11	NT_035173	AP002793	63459751	3	0	0	0	0
S/G/Y/R/B/O	NT_035173	AP003733	63330830	3			AC004228	63105050		17207	0	0	17207
S/G/Y/R/B/O	NT_035173	AP003733	63330830	3			AC004588	63105050		26342	0	7314	33656
S/G/Y/R/B/O	NT_035173	AP003733	63330830	3			AC004588	63105050		26342	0	7314	33656
S/G/Y/R/B/O	NT_035173	AP003733	63330830	3			AC051664	63105050		38168	13502	43761	95431
S/G/Y/R/B/O	NT_035173	AP003733	63330830	3			AC084857	63105050		15937	0	0	15937
S/G/Y/R/B/O	NT_035173	AP003733	63330830	3			AC087451	63105050		88249	0	3248	91497
S/G/Y/R/B/O	NT_035173	AP003733	63330830	3			AC090725	63105050		16297	2206	2621	21124
S/G/Y/R/B/O	NT_035173	AP002793	63459751	3	chr11	NT_035173	AP003306	63603808	3	67994	0	0	67994
S/G/Y/R/B/O	NT_035173	AP002793	63459751	3			AC021454	63105050		98456	1495	2064	102015
S/G/Y/R/B/O	NT_035173	AP002793	63459751	3			AC074200	63105050		47664	2181	0	49845
S/G/Y/R/B/O	NT_035173	AP002793	63459751	3			AC090725	63105050		125823	4448	49587	179858
S/G/Y/R/B/O	NT_035173	AP003306	63603808	3	chr11	NT_035173	AP003064	63708875	3	0	0	0	0
S/G/Y/R/B/O	NT_035173	AP003306	63603808	3			AC074200	63603808		89678	2184	0	91862
S/G/Y/R/B/O	NT_035173	AP003306	63603808	3			AC090725	63603808		61134	0	5339	66473
S/G/Y/R/B/O	NT_035173	AP003064	63708875	3	chr11	NT_035173	AP001363	63851900	3	4481	0	0	4481
S/G/Y/R/B/O	NT_035173	AP003064	63708875	3			AC074200	63459751		50926	0	0	50926
S/G/Y/R/B/O	NT_035173	AP003064	63708875	3			AC090777	63459751		64153	0	10503	74656
S/G/Y/R/B/O	NT_035173	AP003064	63708875	3			AC091101	63459751		115355	0	37266	152621
S/G/Y/R/B/O	NT_035173	AP001363	63851900	3	chr11	NT_035173	AP002990	63905419	3	0	0	0	0
S/G/Y/R/B/O	NT_035173	AP001363	63851900	3			AP000434	63851900		27954	2225	2555	32734
S/G/Y/R/B/O	NT_035173	AP002990	63905419	3	chr11	NT_035173	AP001458	63937733	3	0	1890	0	1890
S/G/Y/R/B/O	NT_035173	AP002990	63905419	3			AC004230	63708875		37893	0	0	37893
S/G/Y/R/B/O	NT_035173	AP002990	63905419	3			AP000434	63708875		16955	0	3881	20836
S/G/Y/R/B/O	NT_035173	AP001458	63937733	3	chr11	NT_035173	AP001160	64113275	3	47411	0	0	47411
S/G/Y/R/B/O	NT_035173	AP001458	63937733	3			AC015703	63937733		18910	10051	10507	39468
S/G/Y/R/B/O	NT_035173	AP001458	63937733	3			AC087681	63937733		55032	0	65961	120993
S/G/Y/R/B/O	NT_035173	AP001458	63937733	3			AC090232	63937733		115378	0	32095	147473
S/G/Y/R/B/O	NT_035173	AP001458	63937733	3			AC090306	63937733		123927	0	49807	173734
S/G/Y/R/B/O	NT_035173	AP001458	63937733	3			AC090321	63937733		23325	0	0	23325
S/G/Y/R/B/O	NT_035173	AP001458	63937733	3			AC090702	63937733		105307	6680	33203	145190
S/G/Y/R/B/O	NT_035173	AP001458	63937733	3			AP000644	63937733		23910	5900	19305	49115
S/G/Y/R/B/O	NT_035173	AP001458	63937733	3			AP001857	64113275		52275	11530	23407	87212
S/G/Y/R/B/O	NT_035173	AP001160	64113275	3	chr11	NT_035173	AP000438	64250571	3	74368	0	0	74368
S/G/Y/R/B/O	NT_035173	AP001160	64113275	3			AC015703	63905419		37499	13751	27619	78869
S/G/Y/R/B/O	NT_035173	AP001160	64113275	3			AC090232	63905419		84255	0	16786	101041
S/G/Y/R/B/O	NT_035173	AP001160	64113275	3			AC090306	63905419		19728	0	28048	47776
S/G/Y/R/B/O	NT_035173	AP001160	64113275	3			AC090321	63905419		119842	0	16221	136063
S/G/Y/R/B/O	NT_035173	AP001160	64113275	3			AC090702	63905419		36488	0	56796	93284
S/G/Y/R/B/O	NT_035173	AP001160	64113275	3			AP001483	63937733		43972	17753	39718	101443
S/G/Y/R/B/O	NT_035173	AP001160	64113275	3			AP001857	63937733		22158	6714	16298	45170
S/G/Y/R/B/O	NT_035173	AP000438	64250571	3	chr11	NT_035173	AP001858	64324840	3	7546	0	0	7546
S/G/Y/R/B/O	NT_035173	AP000438	64250571	3			AC090321	63937733		82228	0	1330	83558
S/G/Y/R/B/O	NT_035173	AP000438	64250571	3			AP001483	64113275		25375	7862	26774	60011
S/G/Y/R/B/O	NT_035173	AP001858	64324840	3	chr11	NT_035173	AP003420	64528015	3	38758	0	0	38758
S/G/Y/R/B/O	NT_035173	AP001858	64324840	3			AC090250	64324840		24237	6751	1214	32202
S/G/Y/R/B/O	NT_035173	AP003420	64528015	3	chr11	NT_035173	AP001880	64650202	3	0	0	0	0
S/G/Y/R/B/O	NT_035173	AP003420	64528015	3			AC073256	64528015		23432	1696	20357	45485
S/G/Y/R/B/O	NT_035173	AP003420	64528015	3			AC090250	64528015		38758	0	0	38758
S/G/Y/R/B/O	NT_035173	AP001880	64650202	3	chr11	NT_035173	AP000484	64741358	3	0	0	0	0
S/G/Y/R/B/O	NT_035173	AP001880	64650202	3			AC073256	64324840		13341	2258	18517	34116
S/G/Y/R/B/O	NT_035173	AP000484	64741358	3	chr11	NT_035173	AP001591	64833474	3	12499	0	0	12499
S/G/Y/R/B/O	NT_035173	AP000484	64741358	3			AC090088	64324840		12499	0	0	12499
S/G/Y/R/B/O	NT_035173	AP001591	64833474	3	chr11	NT_035173	AP000753	64999941	3	0	0	0	0
S/G/Y/R/B/O	NT_035173	AP001591	64833474	3			AC073228	64833474		45557	14646	22373	82576
S/G/Y/R/B/O	NT_035173	AP001591	64833474	3			AC090088	64833474		71810	1669	5718	79197
S/G/Y/R/B/O	NT_035173	AP001591	64833474	3			AC090271	64833474		70542	0	0	70542
S/G/Y/R/B/O	NT_035173	AP001591	64833474	3			AP002337	64741358		94651	3903	11484	110038
S/G/Y/R/B/O	NT_035173	AP001591	64833474	3			U73641	64741358		35337	0	0	35337
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3	chr11	NT_035173	AP000633	65102326	3	44914	0	0	44914
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3	chr11	NT_035173	AP001193	65197832	1	25556	4018	16849	46423
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3			AC073228	64741358		32473	5310	2093	39876
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3			AC090088	64741358		70114	3137	0	73251
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3			AC090271	64741358		67705	0	0	67705
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3			AC090339	64741358		41313	6213	12591	60117
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3			AC090382	64741358		164095	3028	16158	183281
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3			AC091102	64741358		91084	2422	5231	98737
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3			AP001140	65102326		22554	8010	3693	34257
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3			AP001844	65197832		31827	10906	9460	52193
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3			AP001871	65197832		11729	9107	10453	31289
S/G/Y/R/B/O	NT_035173	AP000753	64999941	3			AP002337	65197832		49641	1634	1095	52370
S/G/Y/R/B/O	NT_035173	AP000633	65102326	3	chr11	NT_035173	U73634	65163719	3	0	0	4164	4164
S/G/Y/R/B/O	NT_035173	AP000633	65102326	3	chr11	NT_035173	AP001193	65197832	1	30558	6758	9482	46798
S/G/Y/R/B/O	NT_035173	AP000633	65102326	3			AC090339	65197832		24141	0	21835	45976
S/G/Y/R/B/O	NT_035173	AP000633	65102326	3			AC090382	65197832		44911	0	0	44911
S/G/Y/R/B/O	NT_035173	AP000633	65102326	3			AC091102	65197832		53645	3637	0	57282
S/G/Y/R/B/O	NT_035173	AP000633	65102326	3			AP001844	65197832		15344	0	12804	28148
S/G/Y/R/B/O	NT_035173	AP000633	65102326	3			AP001871	65197832		31253	12072	16705	60030
S/G/Y/R/B/O	NT_035173	U73634	65163719	3	chr11	NT_035173	AP001193	65197832	1	0	0	0	0
S/G/Y/R/B/O	NT_035173	AP001193	65197832	1
S/G/Y/R/B/O	NT_035173	AP001193	65197832	1	chr11	NT_035173	AP000633	65102326	3	30558	6758	9482	46798
S/G/Y/R/B/O	NT_035173	AP001193	65197832	1	chr11	NT_035173	AP000753	64999941	3	25556	4018	16849	46423
S/G/Y/R/B/O	NT_035173	AP001193	65197832	1			AC090339	65102326		18520	17090	22557	58167
S/G/Y/R/B/O	NT_035173	AP001193	65197832	1			AC090382	65102326		31531	9366	22158	63055
S/G/Y/R/B/O	NT_035173	AP001193	65197832	1			AC091102	65102326		35571	19330	9774	64675
S/G/Y/R/B/O	NT_035173	AP001193	65197832	1			AP001140	64999941		28974	12449	17034	58457
S/G/Y/R/B/O	NT_035173	AP001193	65197832	1			AP001844	64999941		35180	7416	18160	60756
S/G/Y/R/B/O	NT_035173	AP001193	65197832	1			AP001871	64999941		25144	6438	10998	42580