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  Chromosome 19 - RH Maps - Single Contig
 

Chromosome 19 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_025920 NT_027203 NT_030867 NT_011227 NT_030171 NT_035556 NT_035557 NT_035558
NT_011277 NT_011268 NT_011255 NT_011145 NT_031917 NT_035605 NT_029485 NT_011176
NT_031915 NT_035559 NT_011151 NT_025155 NT_011290 NT_011281 NT_011295 NT_035560
NT_033317 NT_025183 NT_025175 NT_011196 NT_011296 NT_011192 NT_011233 NT_011250
NT_011139 NT_011109 NT_011148 NT_035607 NT_011225 NT_011150 NT_011104


  NT_011104
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011104AC022066571078251          
S/G/Y/R/B/O NT_011104AC012310572757163RH9220319289.56    1 AC012310.5, AC022066.2
S/G/Y/R/B/O NT_011104AC011470573174643          
S/G/Y/R/B/O NT_011104AC024580574815023RH6615019298.94    1 AC023887.4, AC024580.6
S/G/Y/R/B/O NT_011104AC024580575196853RH6571019284.08    1 AC023887.4, AC024580.6
S/G/Y/R/B/O NT_011104AC024580575441643RH7648419304.02    1 AC023887.4, AC024580.6
S/G/Y/R/B/O NT_011104AC024580575547663RH3585719287.82    1 AC023887.4, AC024580.6
S/G/Y/R/B/O NT_011104AC024580575548453RH3914419289.30    1 AC023887.4, AC024580.6
S/G/Y/R/B/O NT_011104AC011506576154333RH5594119283.91  19375.001 AC011506.3
S/G/Y/R/B/O NT_011104AC011506576481953RH6994819283.91    1 AC011506.3
S/G/Y/R/B/O NT_011104AC011506576686183RH6801219284.01    1 AC011506.3
S/G/Y/R/B/O NT_011104AC011506576687493RH9354619284.01    1 AC011506.3
S/G/Y/R/B/O NT_011104AC006116576856413RH1842819284.22    1 AC006116.1, AC011457.1
S/G/Y/R/B/O NT_011104AC006116577768723RH8862  192852.00  1 AC006116.1, AC011457.1
S/G/Y/R/B/O NT_011104AC006116577930433RH1976  192857.00  1 AC006116.1, AC011457.1
S/G/Y/R/B/O NT_011104AC006116578212373RH4793719284.01    1 AC006116.1, AC011457.1
S/G/Y/R/B/O NT_011104AC013256578640103RH7480719302.48    1 AC013256.1
S/G/Y/R/B/O NT_011104AC098795578699303          
S/G/Y/R/B/O NT_011104AC004696579022723D19S210    19363.101 AC004696.1
S/G/Y/R/B/O NT_011104AC004696579022723RH1325619285.92    1 AC004696.1
S/G/Y/R/B/O NT_011104AC005498579238623RH10255919285.92    1 AC005498.1
S/G/Y/R/B/O NT_011104AC005498579294633RH6613019290.76    1 AC005498.1
S/G/Y/R/B/O NT_011104AC005498579404313RH3906719284.01    1 AC005498.1
S/G/Y/R/B/O NT_011104AC007228579519543RH9198419289.56    1 AC007228.1
S/G/Y/R/B/O NT_011104AC007228579585613RH4868019285.92    1 AC007228.1
S/G/Y/R/B/O NT_011104AC007228579767763RH7496719288.05    1 AC007228.1
S/G/Y/R/B/O NT_011104AC007228580170843RH3918819283.09    1 AC007228.1
S/G/Y/R/B/O NT_011104AC007228580180393RH4826019289.56    1 AC007228.1
S/G/Y/R/B/O NT_011104AC007228580272603RH7539819304.58    1 AC007228.1
S/G/Y/R/B/O NT_011104AC007228580289343RH5598619284.01  19373.101 AC007228.1
S/G/Y/R/B/O NT_011104AC007228580666983RH5772422138.38  22155.902 AC027178.3, AL008582.11
S/G/Y/R/B/O NT_011104AC093061580713153          
S/G/Y/R/B/O NT_011104AC006115582042293RH5577719289.56  19365.401 AC006115.1
S/G/Y/R/B/O NT_011104AC006115582042293RH1747419284.01    1 AC006115.1
S/G/Y/R/B/O NT_011104AC006115582062483RH14963  192867.0019370.001 AC006115.1
S/G/Y/R/B/O NT_011104AC006115582066563RH3919919284.08    1 AC006115.1
S/G/Y/R/B/O NT_011104AC006115582084863RH6611219290.76    1 AC006115.1
S/G/Y/R/B/O NT_011104AC006115582370263RH5592119284.08  19370.101 AC006115.1
S/G/Y/R/B/O NT_011104AC006115582371173RH6768619283.91    1 AC006115.1
S/G/Y/R/B/O NT_011104AC006115582371593RH3591619284.01    1 AC006115.1
S/G/Y/R/B/O NT_011104AC004792582496773          
S/G/Y/R/B/O NT_011104AC044792583706251AFMA342YE9    19367.301 AC044792.5
S/G/Y/R/B/O NT_011104AC044792584317231D19S404    19363.601 AC044792.5
S/G/Y/R/B/O NT_011104AC044792584317231RH31796  192862.00  1 AC044792.5
S/G/Y/R/B/O NT_011104AC025588584675533          
S/G/Y/R/B/O NT_011104AC005261586279773RH2593219287.82    1 AC005261.1
S/G/Y/R/B/O NT_011104AC005261586287223RH1010519283.91    1 AC005261.1
S/G/Y/R/B/O NT_011104AC005261586324403RH10286419284.01    1 AC005261.1
S/G/Y/R/B/O NT_011104AC005261586451463RH9314619287.82    1 AC005261.1
S/G/Y/R/B/O NT_011104AC005261586716953RH3912519285.92    1 AC005261.1


  NT_011104 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011104AC005261586804563RH452719289.56  19365.401 AC005261.1
S/G/Y/R/B/O NT_011104AC005261587020553RH9018  192878.00  1 AC005261.1
S/G/Y/R/B/O NT_011104AC005261587073993RH3905919287.82    1 AC005261.1
S/G/Y/R/B/O NT_011104AC005261587157213RH7670519285.82    1 AC005261.1
S/G/Y/R/B/O NT_011104AC005261587165473RH1747019283.09    1 AC005261.1
S/G/Y/R/B/O NT_011104AC005261587271543RH4573919303.03    1 AC005261.1
S/G/Y/R/B/O NT_011104AC003002587749343RH1833519287.82    1 AC003002.1
S/G/Y/R/B/O NT_011104AC004076588602423RH6923019287.74    1 AC004076.1
S/G/Y/R/B/O NT_011104AC003005589041983RH9851519291.07    1 AC003005.1
S/G/Y/R/B/O NT_011104AC003682589504703RH32452  192883.00  1 AC003682.1
S/G/Y/R/B/O NT_011104AC003682589516773RH5576119291.07192888.0019364.901 AC003682.1
S/G/Y/R/B/O NT_011104AC003682590032503RH33825  192912.00  1 AC003682.1
S/G/Y/R/B/O NT_011104AC003682590032763RH9131319288.26    1 AC003682.1
S/G/Y/R/B/O NT_011104AC003682590034333RH3912319287.74    1 AC003682.1
S/G/Y/R/B/O NT_011104AC003682590312783RH3917719287.74    1 AC003682.1
S/G/Y/R/B/O NT_011104AC003682590343253RH10357119287.74    1 AC003682.1
S/G/Y/R/B/O NT_011104AC003682590523443RH1829719283.19    1 AC003682.1
S/G/Y/R/B/O NT_011104AC003682590524083RH3918119287.74    1 AC003682.1
S/G/Y/R/B/O NT_011104AC003682590535333RH33718  192912.00  1 AC003682.1
S/G/Y/R/B/O NT_011104AC004017590968283RH5570319289.61  19366.501 AC004017.1
S/G/Y/R/B/O NT_011104AC004017590968373RH1034919292.71    1 AC004017.1
S/G/Y/R/B/O NT_011104AC004017590982843RH1229819287.74    1 AC004017.1
S/G/Y/R/B/O NT_011104AC004017591001473RH448819292.71  19363.501 AC004017.1
S/G/Y/R/B/O NT_011104AC004017591001473RH33832  192903.00  1 AC004017.1
S/G/Y/R/B/O NT_011104AC004017591076573RH9369819291.07    1 AC004017.1, AL683889.14
S/G/Y/R/B/O NT_011104AC004017591109293RH5593419287.74  19368.901 AC004017.1, AL683889.14
S/G/Y/R/B/O NT_011104AC004017591111133RH1801419287.74    1 AC004017.1, AL683889.14
S/G/Y/R/B/O NT_011104AC003006591296283RH9852719288.36    1 AC003006.1, AL683889.14
S/G/Y/R/B/O NT_011104AC003006591677303RH4639219296.65    1 AC003006.1, AL683889.14
S/G/Y/R/B/O NT_011104AC003006591677943RH74521  192907.00  1 AC003006.1, AL683889.14
S/G/Y/R/B/O NT_011104AC093037591953903          
S/G/Y/R/B/O NT_011104AC010645591991473RH5569519289.61  19366.401 AC010645.5
S/G/Y/R/B/O NT_011104AC010645592034553RH74524  192940.00  1 AC010645.5, AL683889.14
S/G/Y/R/B/O NT_011104AC010645592067453RH10439519291.07    2 AC010326.7, AC010522.3, AC010645.5
S/G/Y/R/B/O NT_011104AC010645592069563RH3911219289.46    2 AC010326.7, AC010522.3
S/G/Y/R/B/O NT_011104AC010645592071593RH6670619289.46    1 AC010645.5
S/G/Y/R/B/O NT_011104AC010645592135303RH5585119291.07  19364.901 AC010645.5, AL683889.14
S/G/Y/R/B/O NT_011104AC010645592169673RH7799419291.07    2 AC010326.7, AC010522.3, AC010645.5, AC067810.1, AL683889.14
S/G/Y/R/B/O NT_011104AC010645592240953RH6803719304.36    1 AC010645.5
S/G/Y/R/B/O NT_011104AC010645592240973RH9356619289.46    1 AC010645.5
S/G/Y/R/B/O NT_011104AC010522592365553RH3586319289.46    1 AC010522.3, AL683889.14
S/G/Y/R/B/O NT_011104AC010522592558723RH7799419291.07    2 AC010326.7, AC010522.3, AC010645.5, AC067810.1, AL683889.14
S/G/Y/R/B/O NT_011104AC010522592588043RH3911219289.46    2 AC010326.7, AC010522.3
S/G/Y/R/B/O NT_011104AC010522592590223RH10439519291.07    2 AC010326.7, AC010522.3, AC010645.5
S/G/Y/R/B/O NT_011104AC010326593321363RH9868419301.83    1 AC010326.7
S/G/Y/R/B/O NT_011104AC010326593458083RH4626019300.43    1 AC010326.7
S/G/Y/R/B/O NT_011104AC010326593869733RH9179719298.52    1 AC008969.6, AC010326.7
S/G/Y/R/B/O NT_011104AC010326593870933RH9895519289.46    1 AC008969.6, AC010326.7
S/G/Y/R/B/O NT_011104AC008969594074883RH7616719288.05    1 AC008969.6
S/G/Y/R/B/O NT_011104AC008969594208613RH5581119289.61  19366.601 AC008969.6


  NT_011104 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011104AC008751594576523RH59173424.01  415.202 AC105448.4
S/G/Y/R/B/O NT_011104AC008751594733453RH9877319289.46    1 AC008751.6, AC009763.5
S/G/Y/R/B/O NT_011104AC008751594782863RH13989  192937.00  1 AC008751.6, AC009763.5
S/G/Y/R/B/O NT_011104AC008751594927503RH7963719289.61    1 AC008751.6
S/G/Y/R/B/O NT_011104AC008751594927853RH5585519297.07  19363.401 AC008751.6, AC009763.5
S/G/Y/R/B/O NT_011104AC008751594936923RH5579019297.07  19363.501 AC008751.6, AC009763.5
S/G/Y/R/B/O NT_011104AC008751594936993RH3599219289.46    1 AC008751.6
S/G/Y/R/B/O NT_011104AC008751595361533RH5577619291.00192944.0019365.201 AC008751.6
S/G/Y/R/B/O NT_011104AC008751595362493RH3905719289.46    1 AC008751.6
S/G/Y/R/B/O NT_011104AC020915596229723RH8085019294.61    1 AC020915.6, AC023149.4
S/G/Y/R/B/O NT_011104AC020915597053593RH5589819290.96192970.0019366.601 AC020915.6, AC023149.4
S/G/Y/R/B/O NT_011104AC020915597054803RH6663719291.00    1 AC020915.6, AC023149.4
S/G/Y/R/B/O NT_011104AC020915597095443RH7483719295.02    1 AC020915.6, AC023149.4
S/G/Y/R/B/O NT_011104AC020915597132643RH5600519290.96  19366.601 AC020915.6, AC023149.4
S/G/Y/R/B/O NT_011104AC010642597249923RH4642519293.71    1 AC010642.5, AC023149.4
S/G/Y/R/B/O NT_011104AC010642597371763WI-3037    19363.501 AC010642.5, AC023149.4
S/G/Y/R/B/O NT_011104AC010642597519183RH8065719297.17    1 AC010642.5, AC012313.7
S/G/Y/R/B/O NT_011104AC012313597642193RH6509219293.71    1 AC012313.7
S/G/Y/R/B/O NT_011104AC012313597645983RH5592619290.96  19381.501 AC012313.7
S/G/Y/R/B/O NT_011104AC012313598043723RH676096492.59    2 AC012313.7
S/G/Y/R/B/O NT_011104AC012313598044123RH5579719290.96  19366.701 AC012313.7
S/G/Y/R/B/O NT_011104AC012313598100893RH10240419294.92    1 AC012313.7
S/G/Y/R/B/O NT_011104AC012313598277933RH5587119290.59  19378.801 AC012313.7
S/G/Y/R/B/O NT_011104AC012313598386053RH6637219291.00    1 AC012313.7
S/G/Y/R/B/O NT_011104AC012313598427663RH9834719290.59    1 AC012313.7
S/G/Y/R/B/O NT_011104AC012313598430823RH7119619293.71    1 AC012313.7
S/G/Y/R/B/O NT_011104AC012313599081813RH6691719295.22    1 AC012313.7
S/G/Y/R/B/O NT_011104AC012313599081863RH1793319297.58    1 AC012313.7
S/G/Y/R/B/O NT_011104AC012313599081863RH32622  192999.00  1 AC012313.7
S/G/Y/R/B/O NT_011104AC012313599340843RH1555619293.71    1 AC012313.7
S/G/Y/R/B/O NT_011104AC016630599614263RH14954  192982.00  1 AC016630.6
S/G/Y/R/B/O NT_011104AC016630599655463RH3909819293.71    1 AC016630.6
S/G/Y/R/B/O NT_011104AC016630599717913RH7138419291.00    1 AC016629.7, AC016630.6
S/G/Y/R/B/O NT_011104AC016630599718313RH3655719293.71    1 AC016629.7, AC016630.6
S/G/Y/R/B/O NT_011104AC016630599744673RH3918419290.65    2 AC012616.6, AC016629.7, AC016630.6
S/G/Y/R/B/O NT_011104AC016629599917503RH7843619299.69    3 AC012616.6, AC016629.7, AC016629.7
S/G/Y/R/B/O NT_011104AC016629599917773RH7843619299.69    3 AC012616.6, AC016629.7, AC016629.7
S/G/Y/R/B/O NT_011104AC016629599918333RH7478519298.00    2 AC012616.6, AC016629.7
S/G/Y/R/B/O NT_011104AC016629599936553RH3915619290.65    1 AC016629.7
S/G/Y/R/B/O NT_011104 - RH10192119307.87    0  
S/G/Y/R/B/O NT_011104 - RH10207019303.47    1 AC011487.5
S/G/Y/R/B/O NT_011104 - RH10235719299.37    1 AC009968.6, AC012314.8
S/G/Y/R/B/O NT_011104 - RH1181219284.08    0  
S/G/Y/R/B/O NT_011104 - RH2520919301.29    1 AC012314.8
S/G/Y/R/B/O NT_011104 - RH2672219301.29    1 AC012314.8, AC041031.1
S/G/Y/R/B/O NT_011104 - RH2675819303.58    1 AC011468.7, AC016339.2
S/G/Y/R/B/O NT_011104 - RH2683619304.91    1 AC020922.7
S/G/Y/R/B/O NT_011104 - RH2706719303.47    2 AC010487.7, AP004783.1
S/G/Y/R/B/O NT_011104 - RH3904119301.40    1 AC116338.3, AC116342.2
S/G/Y/R/B/O NT_011104 - RH3913019285.92    0  


  NT_011104 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011104 - RH4538819299.05    0  
S/G/Y/R/B/O NT_011104 - RH4732519304.80    0  
S/G/Y/R/B/O NT_011104 - RH4774119302.48    0  
S/G/Y/R/B/O NT_011104 - RH4853619303.47    1 AC008440.8, AC008753.8, AC022318.5
S/G/Y/R/B/O NT_011104 - RH5570219307.75    2 AC010619.7, AC012617.6, AC068670.2
S/G/Y/R/B/O NT_011104 - RH5570419303.47    1 AC008440.8, AC009968.6, AC022318.5
S/G/Y/R/B/O NT_011104 - RH5573419308.44    1 AC011468.7, AC016339.2
S/G/Y/R/B/O NT_011104 - RH5578719308.68    1 AC008813.6
S/G/Y/R/B/O NT_011104 - RH5579619306.04  19363.401 AC008440.8, AC022318.5
S/G/Y/R/B/O NT_011104 - RH5581819308.56  19367.301 AC010328.4, AC015589.4
S/G/Y/R/B/O NT_011104 - RH5582619289.61    2 AC009968.6, AC010492.7, AC012314.8
S/G/Y/R/B/O NT_011104 - SGC35428    19368.201 AC011501.7
S/G/Y/R/B/O NT_011104 - RH5585019307.87    1 AC011460.3
S/G/Y/R/B/O NT_011104 - RH5588919285.82  19368.500  
S/G/Y/R/B/O NT_011104 - WI-15141    19370.101 AC008735.8, AC068038.2
S/G/Y/R/B/O NT_011104 - RP_L28_1    19371.501 AC020922.7
S/G/Y/R/B/O NT_011104 - WI-15387    19373.101 AC020922.7
S/G/Y/R/B/O NT_011104 - WI-5734    19374.901 AC020922.7
S/G/Y/R/B/O NT_011104 - SGC35391    19374.904 AC011501.7, AL133414.4, AL133414.4, AL133414.4
S/G/Y/R/B/O NT_011104 - RP_S9    19376.802 AC010492.7, AC012314.8
S/G/Y/R/B/O NT_011104 - SGC31670    19381.002 AC010492.7, AC012314.8
S/G/Y/R/B/O NT_011104 - WI-18576    19382.301 AC011487.5
S/G/Y/R/B/O NT_011104 - WI-16992    19382.301 AC021848.4, AC022150.6
S/G/Y/R/B/O NT_011104 - RH5590519287.85  19383.100  
S/G/Y/R/B/O NT_011104 - RH5593919293.71  19384.601 AL050331.11, AL355373.4
S/G/Y/R/B/O NT_011104 - RH5599719290.76    1 AC008735.8, AC068038.2
S/G/Y/R/B/O NT_011104 - SGC35500    19384.601 AC011501.7, AC026981.1, AC069174.1
S/G/Y/R/B/O NT_011104 - RH6701219295.12    0 More than 15
S/G/Y/R/B/O NT_011104 - SGC30985    19385.201 AC011468.7
S/G/Y/R/B/O NT_011104 - RH6788019301.40    1 AC012314.8
S/G/Y/R/B/O NT_011104 - RH7135719307.75    1 AC005946.1, AC006272.1
S/G/Y/R/B/O NT_011104 - RH7143019305.03    0  
S/G/Y/R/B/O NT_011104 - RH7143319301.40    1 AC092070.2
S/G/Y/R/B/O NT_011104 - RH7607119303.80    1 AC011468.7, AC055770.1
S/G/Y/R/B/O NT_011104 - RH7630619301.29    3 AC011501.7, AC011501.7, AL133414.4
S/G/Y/R/B/O NT_011104 - RH7790719289.56    1 AC008735.8
S/G/Y/R/B/O NT_011104 - RH7835119289.56    1 AC008735.8, AC068038.2
S/G/Y/R/B/O NT_011104 - RH9121819290.76    1 AC008735.8, AC068038.2
S/G/Y/R/B/O NT_011104 - RH8008319299.16    1 AC011476.7, AC019238.5
S/G/Y/R/B/O NT_011104 - RH8013119307.64    1 AC011468.7
S/G/Y/R/B/O NT_011104 - RH9218619290.76    1 AC008735.8, AC010525.5
S/G/Y/R/B/O NT_011104 - RH9310719301.07    1 AC011476.7, AC011501.7, AC019238.5
S/G/Y/R/B/O NT_011104 - RH9323519289.61    1 AC008735.8, AC068038.2
S/G/Y/R/B/O NT_011104 - RH9380219303.47    0  
S/G/Y/R/B/O NT_011104 - RH9405819289.56    1 AC008735.8, AC068038.2
S/G/Y/R/B/O NT_011104 - RH9420319305.81    1 AC092070.2
S/G/Y/R/B/O NT_011104 - RH9872419289.56    1 AC008735.8