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  Chromosome 19 - RH Maps - Single Contig
 

Chromosome 19 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_025920 NT_027203 NT_030867 NT_011227 NT_030171 NT_035556 NT_035557 NT_035558
NT_011277 NT_011268 NT_011255 NT_011145 NT_031917 NT_035605 NT_029485 NT_011176
NT_031915 NT_035559 NT_011151 NT_025155 NT_011290 NT_011281 NT_011295 NT_035560
NT_033317 NT_025183 NT_025175 NT_011196 NT_011296 NT_011192 NT_011233 NT_011250
NT_011139 NT_011109 NT_011148 NT_035607 NT_011225 NT_011150 NT_011104


  NT_011255
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011255AC01155930257873RH787191932.02    1 AC011559.3
S/G/Y/R/B/O NT_011255AC00627730294423          
S/G/Y/R/B/O NT_011255AC00776630900713RH390451927.66    1 AC007766.1, AC024721.5
S/G/Y/R/B/O NT_011255AC01154931086943          
S/G/Y/R/B/O NT_011255AC09305331397723          
S/G/Y/R/B/O NT_011255AC00594431452473RH693161927.61    1 AC005944.1, AC024721.5
S/G/Y/R/B/O NT_011255AC00594431453533RH675381927.71    1 AC005944.1
S/G/Y/R/B/O NT_011255AC10452631833923          
S/G/Y/R/B/O NT_011255AC00526232161603RH472931932.22    1 AC005262.1, AC024721.5, AC090158.2
S/G/Y/R/B/O NT_011255AC00526432557493RH114561927.61    1 AC005264.1
S/G/Y/R/B/O NT_011255AC01154733000683RH559801932.22  1917.101 AC005331.1, AC011547.4
S/G/Y/R/B/O NT_011255AC01154733005953RH672231932.02    1 AC005331.1, AC011547.4
S/G/Y/R/B/O NT_011255AC01154733016563RH181901931.19    1 AC005331.1, AC011547.4
S/G/Y/R/B/O NT_011255AC01154733016643RH250301931.19    1 AC005331.1, AC011547.4
S/G/Y/R/B/O NT_011255AC00533133023813          
S/G/Y/R/B/O NT_011255AC00650533345313          
S/G/Y/R/B/O NT_011255AC12391133689653          
S/G/Y/R/B/O NT_011255AC01064933883663RH673991929.69    1 AC010649.8
S/G/Y/R/B/O NT_011255AC01064934066683RH150851929.59    1 AC010649.8, AC104524.2
S/G/Y/R/B/O NT_011255AC10452434097713          
S/G/Y/R/B/O NT_011255AC00779234237383          
S/G/Y/R/B/O NT_011255AC00551434570143RH673131931.92    1 AC005514.1, AC087046.1
S/G/Y/R/B/O NT_011255AC10410434896993          
S/G/Y/R/B/O NT_011255AC00577834997273          
S/G/Y/R/B/O NT_011255AC09307735427743          
S/G/Y/R/B/O NT_011255AC00555135550963RH709431931.92    1 AC005551.1
S/G/Y/R/B/O NT_011255AC00555135573273RH476881932.22    1 AC005551.1
S/G/Y/R/B/O NT_011255AC00555135593253RH272201931.40    1 AC005551.1
S/G/Y/R/B/O NT_011255AC00555135610183RH559161932.22  1917.101 AC005551.1
S/G/Y/R/B/O NT_011255AC00555135613193RH360341931.92    1 AC005551.1
S/G/Y/R/B/O NT_011255AC00555135668903RH1021691931.19    1 AC005551.1
S/G/Y/R/B/O NT_011255AC09305235864033          
S/G/Y/R/B/O NT_011255AC00578736311093RH488111932.43    1 AC005786.1, AC005787.1
S/G/Y/R/B/O NT_011255AC00578636405023RH477541932.22    1 AC005786.1
S/G/Y/R/B/O NT_011255AC00578636495073RH987741932.22    1 AC005786.1
S/G/Y/R/B/O NT_011255AC00578636711263RH390721932.33    1 AC005786.1, AC068475.2, AC116968.2
S/G/Y/R/B/O NT_011255AC00578636712623RH448551932.22    1 AC005786.1, AC068475.2, AC116968.2
S/G/Y/R/B/O NT_011255AC00578636713143RH418671932.22    1 AC005786.1, AC068475.2, AC116968.2
S/G/Y/R/B/O NT_011255AC11696836713823          
S/G/Y/R/B/O NT_011255AC00517536878363RH807491932.22    1 AC005175.1, AC068475.2
S/G/Y/R/B/O NT_011255AC00517536922173RH757431932.43    1 AC005175.1, AC068475.2
S/G/Y/R/B/O NT_011255AC00517537030683RH170291931.81    1 AC005175.1, AC068475.2
S/G/Y/R/B/O NT_011255AC00554237225343RH558361932.27  1919.901 AC005542.1, AC068475.2
S/G/Y/R/B/O NT_011255AC00554237230213RH177511927.71    1 AC005542.1, AC068475.2
S/G/Y/R/B/O NT_011255AC09307137469343          
S/G/Y/R/B/O NT_011255AC00463737535973          
S/G/Y/R/B/O NT_011255AC00612537936843          
S/G/Y/R/B/O NT_011255AC00595438429623RH1030391932.22    1 AC005954.1, AC068475.2
S/G/Y/R/B/O NT_011255AC00595438432533RH787511932.22    1 AC005954.1, AC068475.2
S/G/Y/R/B/O NT_011255AC00577738964233RH1033371931.92    1 AC005777.1


  NT_011255 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011255AC00459838988403          
S/G/Y/R/B/O NT_011255AC09307839441573RH558011932.22  1917.101 AC011488.6, AC034201.2, AC093078.3, AC122704.1
S/G/Y/R/B/O NT_011255AC01148840339502RH419471933.46    1 AC011488.6, AC034201.2
S/G/Y/R/B/O NT_011255AC01148840340872RH107891931.19    1 AC011488.6, AC034201.2
S/G/Y/R/B/O NT_011255AC01148840505272RH474471931.40    1 AC011488.6, AC034201.2
S/G/Y/R/B/O NT_011255AC01658640669432RH801231931.92    1 AC011488.6, AC016586.7, AC034201.2
S/G/Y/R/B/O NT_011255AC01658640669822RH782431931.19    1 AC016586.7, AC034201.2
S/G/Y/R/B/O NT_011255AC01658641307982RH911121931.19    1 AC016586.7
S/G/Y/R/B/O NT_011255AC01658641308352RH256541932.22    1 AC016586.7
S/G/Y/R/B/O NT_011255AC01658641370502RH477361932.22    1 AC016586.7
S/G/Y/R/B/O NT_011255AC01658641381842RH261111931.19    1 AC016586.7
S/G/Y/R/B/O NT_011255AC01658641882422RH1041821932.22    1 AC016586.7, AC027272.4
S/G/Y/R/B/O NT_011255AC01658642012362RH175011932.22    1 AC016586.7, AC027272.4
S/G/Y/R/B/O NT_011255AC01658642013682RH1233319264.83    1 AC016586.7, AC027272.4
S/G/Y/R/B/O NT_011255AC00562042669793RH931561931.19    1 AC005620.1, AC016586.7, AC027272.4
S/G/Y/R/B/O NT_011255AC00693042689903          
S/G/Y/R/B/O NT_011255AC00557843299333RH390791932.02    1 AC005578.1, AC027272.4
S/G/Y/R/B/O NT_011255AC00861643615053RH1023741932.22    1 AC008616.6, AC104521.2
S/G/Y/R/B/O NT_011255AC00861643833673RH557561932.33  1917.401 AC008616.6, AC104521.2
S/G/Y/R/B/O NT_011255AC00861644163563RH911021932.22    1 AC008616.6, AC104521.2
S/G/Y/R/B/O NT_011255AC00861644168573RH557311931.92  1919.001 AC008616.6, AC104521.2
S/G/Y/R/B/O NT_011255AC10452144180411          
S/G/Y/R/B/O NT_011255AC00729244289923          
S/G/Y/R/B/O NT_011255AC01149845322193RH177881931.92    1 AC011498.7, AF190465.1
S/G/Y/R/B/O NT_011255AC01149845322923RH271781932.22    1 AC011498.7, AF190465.1
S/G/Y/R/B/O NT_011255AC01149845351553RH32228  19210.00  1 AC011498.7, AF190465.1
S/G/Y/R/B/O NT_011255AC01149845351733RH705811931.92    1 AC011498.7, AF190465.1
S/G/Y/R/B/O NT_011255AC01149845371783RH803391933.46    1 AC011498.7, AF190465.1
S/G/Y/R/B/O NT_011255AC01149845372193RH782721931.19    1 AC011498.7, AF190465.1
S/G/Y/R/B/O NT_011255AC01149845943803RH801351931.32    1 AC011498.7
S/G/Y/R/B/O NT_011255AC01149846292783RH489731932.33    1 AC011498.7
S/G/Y/R/B/O NT_011255AC01149846293973RH805141931.92    1 AC011498.7
S/G/Y/R/B/O NT_011255AC01149846295033RH915481932.22    1 AC011498.7
S/G/Y/R/B/O NT_011255AC00533947399933RH692331931.92    1 AC005339.1
S/G/Y/R/B/O NT_011255AC00533947474343RH164481932.22    1 AC005339.1
S/G/Y/R/B/O NT_011255AC00533947474763RH668801931.92    1 AC005339.1
S/G/Y/R/B/O NT_011255AC00533947498393RH161581931.19    1 AC005339.1
S/G/Y/R/B/O NT_011255AC00559447677003RH1022081931.19    1 AC005594.1
S/G/Y/R/B/O NT_011255AC00578347912603          
S/G/Y/R/B/O NT_011255AC00653748329573          
S/G/Y/R/B/O NT_011255AC00552348874533RH801531932.95    1 AC005523.1
S/G/Y/R/B/O NT_011255AC00552348930473RH1025771933.36    1 AC005523.1
S/G/Y/R/B/O NT_011255AC02731949080943RH558851932.64  1920.101 AC027319.5
S/G/Y/R/B/O NT_011255AC02731949081113RH391491933.36    1 AC027319.5
S/G/Y/R/B/O NT_011255AC02731949305283RH451341933.46    1 AC027319.5
S/G/Y/R/B/O NT_011255AC02731950414903D19S216    1920.802 AC019114.5
S/G/Y/R/B/O NT_011255AC02731950414903RH45081935.88    2 AC019114.5
S/G/Y/R/B/O NT_011255AC10452550453233          
S/G/Y/R/B/O NT_011255AC05346750610143          
S/G/Y/R/B/O NT_011255AC10452050908373          


  NT_011255 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011255AC00559551119163          
S/G/Y/R/B/O NT_011255AC09303351379993          
S/G/Y/R/B/O NT_011255AC02251752449273RH656591934.68    1 AC021618.4, AC022517.1
S/G/Y/R/B/O NT_011255AC02251752453403RH559611934.68  1920.501 AC021618.4, AC022517.1
S/G/Y/R/B/O NT_011255AC02251752517623WI-4539    1200.103 AC016677.4, AC021618.4, AC022517.1, AC103923.2, AL022144.1
S/G/Y/R/B/O NT_011255AC02251752614763RH802471938.62    1 AC021618.4, AC022517.1
S/G/Y/R/B/O NT_011255AC11853552976733RH391151935.98    1 AC118535.1
S/G/Y/R/B/O NT_011255AC11853552982163RH478251934.68    1 AC118535.1
S/G/Y/R/B/O NT_011255AC11853552986553RH665351934.68    1 AC118535.1
S/G/Y/R/B/O NT_011255AC00578853124073          
S/G/Y/R/B/O NT_011255AC00533853356823          
S/G/Y/R/B/O NT_011255AC00579053667183RH1266  19210.00  2 AC005790.1, AC005790.1
S/G/Y/R/B/O NT_011255AC00579053667573RH1266  19210.00  2 AC005790.1, AC005790.1
S/G/Y/R/B/O NT_011255AC00579053889113WI-8845    1921.701 AC005790.1
S/G/Y/R/B/O NT_011255AC00579053889113RH557401935.98    1 AC005790.1
S/G/Y/R/B/O NT_011255AC00533554000903          
S/G/Y/R/B/O NT_011255AC01149054408603          
S/G/Y/R/B/O NT_011255AC00576455451833          
S/G/Y/R/B/O NT_011255AC00456055729593          
S/G/Y/R/B/O NT_011255AC00576556123243RH8018613153.59    2 AC005765.1, AC008481.8, AC023217.3, AL138875.8
S/G/Y/R/B/O NT_011255AC01153356503073RH8581  19212.00  1 AC011533.6
S/G/Y/R/B/O NT_011255AC01153356503193RH359721935.68    1 AC011533.6
S/G/Y/R/B/O NT_011255AC01153356524223RH699811935.68    1 AC011533.6
S/G/Y/R/B/O NT_011255AC09305956696023          
S/G/Y/R/B/O NT_011255AC00461156791343RH13853  19219.00  1 AC004611.1
S/G/Y/R/B/O NT_011255AC00461156967193RH806551935.68    1 AC004611.1, AL356352.8
S/G/Y/R/B/O NT_011255AC00461157067873RH420001934.25    1 AC004611.1, AL356352.8
S/G/Y/R/B/O NT_011255AC00461157147063RH253611934.07    1 AC004611.1
S/G/Y/R/B/O NT_011255AC01149957337353RH933021934.66    1 AC011499.5, AL356352.8
S/G/Y/R/B/O NT_011255AC01149957587813RH271181934.07    1 AC011499.5, AL356352.8
S/G/Y/R/B/O NT_011255AC01149957591743RH159131934.66    1 AC011499.5, AL356352.8
S/G/Y/R/B/O NT_011255AC01149957604183RH475361934.07    1 AC011499.5, AL356352.8
S/G/Y/R/B/O NT_011255AC01149957604953RH559511934.66  1922.001 AC011499.5
S/G/Y/R/B/O NT_011255AC01149957803293RH780431934.66    1 AC011499.5, AL356352.8
S/G/Y/R/B/O NT_011255AC01149958773203RH985171934.07    1 AC011499.5, AC021165.4
S/G/Y/R/B/O NT_011255AC02459259233623SGC35572    1923.101 AC010454.5, AC021165.4, AC024592.5
S/G/Y/R/B/O NT_011255AC02459259233623RH558811939.03    1 AC010454.5, AC021165.4, AC024592.5
S/G/Y/R/B/O NT_011255AC02459259351853RH916561934.58    1 AC010454.5, AC021165.4, AC024592.5
S/G/Y/R/B/O NT_011255AC02459259579913RH916571935.68    1 AC010454.5, AC021165.4, AC024592.5
S/G/Y/R/B/O NT_011255AC02459259868213RH391261935.78    1 AC010454.5, AC021165.4, AC024592.5
S/G/Y/R/B/O NT_011255AC10453260077023RH781721935.78    1 AC004602.1
S/G/Y/R/B/O NT_011255AC00460260094503SGC31821    1923.101 AC004602.1, AC021165.4
S/G/Y/R/B/O NT_011255AC09305060403603          
S/G/Y/R/B/O NT_011255AC00578460857463RH483631935.78    1 AC005784.1, AC011444.5
S/G/Y/R/B/O NT_011255AC00578460867653RH14167  29528.00  1 AC005784.1, AC011444.5, AL159157.3
S/G/Y/R/B/O NT_011255AC01144461865343RH418781935.78    1 AC011444.5, AC104538.2
S/G/Y/R/B/O NT_011255AC10453862100693          
S/G/Y/R/B/O NT_011255AC01147162850873RH931171935.68    1 AC011471.6
S/G/Y/R/B/O NT_011255AC01147163025433RH557421933.56  1922.101 AC011471.6
S/G/Y/R/B/O NT_011255 - RH123311931.92    1 AC008755.7, AC008895.7


  NT_011255 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011255 - RH391311932.27    0  
S/G/Y/R/B/O NT_011255 - RH391351934.68    0  
S/G/Y/R/B/O NT_011255 - RH418611932.22    0  
S/G/Y/R/B/O NT_011255 - RH472241935.78    0 AC005784.1, AC011444.5
S/G/Y/R/B/O NT_011255 - RH475551934.56    0 AC011499.5
S/G/Y/R/B/O NT_011255 - RH557681932.74    1 AC004410.1, AC023821.1
S/G/Y/R/B/O NT_011255 - RH557721932.74    1 AC004410.1
S/G/Y/R/B/O NT_011255 - RH713481932.74    1 AC005263.1
S/G/Y/R/B/O NT_011255 - RH751651935.68    0  
S/G/Y/R/B/O NT_011255 - RH795701932.64    0  
S/G/Y/R/B/O NT_011255 - RH804771933.97    0  
S/G/Y/R/B/O NT_011255 - RH915131932.22    0  
S/G/Y/R/B/O NT_011255 - RH937601935.78    0