Chromosome 3 - Genetic Maps - Single Contig

Chromosome 3 - Genetic Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_005612

Links	Contig	Accession	Chr Start	Phs	STS Marker	Gen Chr	Genethon	Marsh Chr	Marshfield	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005612	AC012027	161206005	1
S/G/Y/R/B/O	NT_005612	AC106707	161228925	1
S/G/Y/R/B/O	NT_005612	AC068393	161391647	1
S/G/Y/R/B/O	NT_005612	AC089988	161405951	1
S/G/Y/R/B/O	NT_005612	AC010936	161419031	1
S/G/Y/R/B/O	NT_005612	AC025033	161423028	1
S/G/Y/R/B/O	NT_005612	AC080013	161553136	3	GGAA6B07			3	172.27	1		AC080013
S/G/Y/R/B/O	NT_005612	AC021773	161652221	1
S/G/Y/R/B/O	NT_005612	AC092999	161701906	3	AFMC024YD1	3	176.30	3	172.27	1	AC021773,	AC021773
S/G/Y/R/B/O	NT_005612	AC092997	161826045	3
S/G/Y/R/B/O	NT_005612	AC026611	161975099	1
S/G/Y/R/B/O	NT_005612	AC107312	161975105	1
S/G/Y/R/B/O	NT_005612	AC017090	162051179	1
S/G/Y/R/B/O	NT_005612	AC022566	162150121	1
S/G/Y/R/B/O	NT_005612	AC092861	162156916	1
S/G/Y/R/B/O	NT_005612	AC063955	162175583	3
S/G/Y/R/B/O	NT_005612	AC068770	162404281	3	AFM200ZE11	3	178.10	3	173.34	1	AC012401,	AC012401, AC068770
S/G/Y/R/B/O	NT_005612	AC012401	162458732	1	AFMA210WH5	3	177.60	3	173.34	1		AC012401
S/G/Y/R/B/O	NT_005612	AC092943	162476656	3
S/G/Y/R/B/O	NT_005612	AC021654	162722002	3	AFM164YE7	3	177.60	3	173.34	1	AC010370,	AC010370
S/G/Y/R/B/O	NT_005612	AC025432	162732478	3
S/G/Y/R/B/O	NT_005612	AC010370	162754681	3
S/G/Y/R/B/O	NT_005612	AC018360	162859828	3
S/G/Y/R/B/O	NT_005612	AC110990	163038454	3
S/G/Y/R/B/O	NT_005612	AC009811	163054681	2
S/G/Y/R/B/O	NT_005612	AC055712	163225764	1
S/G/Y/R/B/O	NT_005612	AC048332	163327237	1
S/G/Y/R/B/O	NT_005612	AC069210	163330017	1
S/G/Y/R/B/O	NT_005612	AC026118	163363809	1	GATA43F06			2	231.27	1		AC026118
S/G/Y/R/B/O	NT_005612	AC026118	163627534	1	MFD303			3	173.34	1		AC026118
S/G/Y/R/B/O	NT_005612	AC112641	163382069	3
S/G/Y/R/B/O	NT_005612	AL355924	163547688	2
S/G/Y/R/B/O	NT_005612	AC079594	163559454	1
S/G/Y/R/B/O	NT_005612	AC012342	163674211	1
S/G/Y/R/B/O	NT_005612	AC024221	163677448	1
S/G/Y/R/B/O	NT_005612	AC018850	163808280	1
S/G/Y/R/B/O	NT_005612	AC078868	163809113	1
S/G/Y/R/B/O	NT_005612	AC069224	163984531	1
S/G/Y/R/B/O	NT_005612	AC092986	164149474	1
S/G/Y/R/B/O	NT_005612	AC073452	164163921	1
S/G/Y/R/B/O	NT_005612	AC074276	164179001	1
S/G/Y/R/B/O	NT_005612	AC069232	164362061	1
S/G/Y/R/B/O	NT_005612	AC112502	164387114	1
S/G/Y/R/B/O	NT_005612	AC063937	164425982	1
S/G/Y/R/B/O	NT_005612	AC079943	164485059	3
S/G/Y/R/B/O	NT_005612	AC055761	164622611	3
S/G/Y/R/B/O	NT_005612	AC024109	164755532	1
S/G/Y/R/B/O	NT_005612	AC084212	164882891	1
S/G/Y/R/B/O	NT_005612	AC015904	164970597	1
S/G/Y/R/B/O	NT_005612	AC020630	165034523	1	AFM317XE1	3	177.40	3	172.27	1	AC015904, AC084212,	AC015904, AC020630, AC084212, AC092987

NT_005612 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	Gen Chr	Genethon	Marsh Chr	Marshfield	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005612	AC026562	165189086	1
S/G/Y/R/B/O	NT_005612	AC092944	165316361	1	AFM319YB1	3	177.50	3	172.27	1	AC026562, AC069256, AC104411,	AC026562, AC069256, AC092944, AC104411
S/G/Y/R/B/O	NT_005612	AC069256	165192639	3
S/G/Y/R/B/O	NT_005612	AC011317	165350817	3
S/G/Y/R/B/O	NT_005612	AC016142	165497914	1
S/G/Y/R/B/O	NT_005612	AC108674	165575920	1
S/G/Y/R/B/O	NT_005612	AC108729	165577261	1
S/G/Y/R/B/O	NT_005612	AC012022	165698922	3
S/G/Y/R/B/O	NT_005612	AC068498	165855797	1
S/G/Y/R/B/O	NT_005612	AC067721	166024519	1	AFM184XD12	3	177.60			1		AC067721
S/G/Y/R/B/O	NT_005612	AC067721	166024519	1	AFM184XD12			3	170.14	1		AC067721
S/G/Y/R/B/O	NT_005612	AC024160	165905012	1
S/G/Y/R/B/O	NT_005612	AC110490	166040740	1
S/G/Y/R/B/O	NT_005612	AC068801	166046839	1
S/G/Y/R/B/O	NT_005612	AC020636	166064986	1
S/G/Y/R/B/O	NT_005612	AC068296	166134672	1
S/G/Y/R/B/O	NT_005612	AC010763	166189553	1
S/G/Y/R/B/O	NT_005612	AC110152	166263787	1	AFM242XC3	3	176.40	3	171.47	1		AC110152
S/G/Y/R/B/O	NT_005612	AC026210	166214890	1
S/G/Y/R/B/O	NT_005612	AC104472	166238733	1
S/G/Y/R/B/O	NT_005612	AC011103	166434128	1
S/G/Y/R/B/O	NT_005612	AF411849	166499372	3	AFM263ZC9	3	173.00			2	AC011103, AC020636, AC078919,	AC011103, AC020636, AC036109, AC078919, AC108726, AF411849
S/G/Y/R/B/O	NT_005612	AF411849	166499372	3	AFM263ZC9			3	168.94	2	AC011103, AC020636, AC078919,	AC011103, AC020636, AC036109, AC078919, AC108726, AF411849
S/G/Y/R/B/O	NT_005612	AC078816	166697359	3	AFMB293XG5	3	173.00			1		AC078816
S/G/Y/R/B/O	NT_005612	AC078816	166697359	3	AFMB293XG5			3	168.94	1		AC078816
S/G/Y/R/B/O	NT_005612	AC078816	166721483	3	AFM292ZE1	3	173.00			1	AC024886,	AC024886, AC078816
S/G/Y/R/B/O	NT_005612	AC078816	166721483	3	AFM292ZE1			3	168.94	1	AC024886,	AC024886, AC078816
S/G/Y/R/B/O	NT_005612	AC024886	166735443	3	AFM164YG9	3	173.00			1		AC024886
S/G/Y/R/B/O	NT_005612	AC024886	166735443	3	AFM164YG9			3	169.60	1		AC024886
S/G/Y/R/B/O	NT_005612	AC091607	166964005	1
S/G/Y/R/B/O	NT_005612	AC026176	167036213	1
S/G/Y/R/B/O	NT_005612	AC022013	167076428	3
S/G/Y/R/B/O	NT_005612	AC018507	167270705	3	AFM157XB4	3	176.10	3	172.27	1	AC069413,	AC018507, AC063934, AC069413
S/G/Y/R/B/O	NT_005612	AC069413	167277367	3
S/G/Y/R/B/O	NT_005612	AC084036	167347084	3
S/G/Y/R/B/O	NT_005612	AC112772	167369114	1
S/G/Y/R/B/O	NT_005612	AC092927	167369115	3
S/G/Y/R/B/O	NT_005612	AC106708	167548657	1
S/G/Y/R/B/O	NT_005612	AC024165	167570141	1
S/G/Y/R/B/O	NT_005612	AC010935	167589350	1
S/G/Y/R/B/O	NT_005612	AC092993	167672060	3
S/G/Y/R/B/O	NT_005612	AC023008	167819919	1
S/G/Y/R/B/O	NT_005612	AC104411	167820090	1
S/G/Y/R/B/O	NT_005612		-		AFM197XB2	3	176.20	3	171.47	0