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Chromosome 3 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_005927 NT_029265 NT_028123 NT_006044 NT_022517 NT_005507 NT_022516 NT_005564
NT_005762 NT_005646 NT_028139 NT_033044 NT_005502 NT_022539 NT_022464 NT_005580
NT_033049 NT_005498 NT_006036 NT_005825 NT_029949 NT_005991 NT_005585 NT_022567
NT_028129 NT_005990 NT_030623 NT_022439 NT_006014 NT_033032 NT_005986 NT_033015
NT_033038 NT_022552 NT_005787 NT_033040 NT_022481 NT_005607 NT_033026 NT_005999
NT_005531 NT_022473 NT_022423 NT_005510 NT_022510 NT_022665 NT_028127 NT_022400
NT_005530 NT_029258 NT_022442 NT_005769 NT_005526 NT_022540 NT_022717 NT_005644
NT_022446 NT_005583 NT_033034 NT_005882 NT_033036 NT_022419 NT_006031 NT_022551
NT_022459 NT_033029 NT_022713 NT_022460 NT_033011 NT_022554 NT_022720 NT_005684
NT_005663 NT_033018 NT_022420 NT_033043 NT_022642 NT_005791 NT_022452 NT_022435
NT_033028 NT_022497 NT_022625 NT_005568 NT_022401 NT_033031 NT_026983 NT_022475
NT_033037 NT_022451 NT_005509 NT_005527 NT_033050 NT_030634 NT_033041 NT_005863
NT_022454 NT_022607 NT_022453 NT_025670 NT_030622 NT_033045 NT_022728 NT_031768
NT_019350 NT_022434 NT_029256 NT_022405 NT_022569 NT_006042 NT_022484 NT_005795
NT_015150 NT_022445 NT_030625 NT_005532 NT_029269 NT_022455 NT_029931 NT_033022
NT_029257 NT_005513 NT_005994 NT_030635 NT_022411 NT_005824 NT_033021 NT_005543
NT_005588 NT_006029 NT_022513 NT_005523 NT_033014 NT_006025 NT_022404 NT_005823
NT_033019 NT_022393 NT_025663 NT_005567 NT_030630 NT_005969 NT_033051 NT_025664
NT_005655 NT_022503 NT_022632 NT_033024 NT_022416 NT_022432 NT_033020 NT_033035
NT_033042 NT_005832 NT_022502 NT_005772 NT_019358 NT_005591 NT_005775 NT_022616
NT_005540 NT_029939 NT_005616 NT_005539 NT_022555 NT_005849 NT_005657 NT_005678
NT_005846 NT_005612 NT_033030 NT_022463 NT_022594 NT_022449 NT_022421 NT_005744
NT_022565 NT_022518 NT_005638 NT_022397 NT_022700 NT_022422 NT_025667 NT_033052
NT_022472 NT_033033 NT_022526 NT_022674 NT_022458 NT_022509 NT_005635 NT_033053
NT_005950 NT_022396 NT_005952 NT_022406 NT_022676 NT_029253 NT_030638 NT_005910
NT_022549 NT_033009 NT_005911 NT_005962 NT_031766 NT_005883 NT_005501 NT_005571
NT_033017 NT_033013 NT_029928 NT_033010 NT_005834 NT_005535 NT_033012 NT_033016
NT_022508


  NT_005646
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005646AC109586271563611GATA8A07  355.111 AC109586
S/G/Y/R/B/O NT_005646AC109586271662311AFM183YC3346.80352.601AC093412, AC093412, AC109586
S/G/Y/R/B/O NT_005646AC093412270742381        
S/G/Y/R/B/O NT_005646AC093142272587711        
S/G/Y/R/B/O NT_005646AC098970273929071        
S/G/Y/R/B/O NT_005646AC018428275414961        
S/G/Y/R/B/O NT_005646AC025543275426071        
S/G/Y/R/B/O NT_005646AC097361275442791        
S/G/Y/R/B/O NT_005646AC067874277077331        
S/G/Y/R/B/O NT_005646AC012262277460753        
S/G/Y/R/B/O NT_005646AC098650278984651        
S/G/Y/R/B/O NT_005646AC098616279976693        
S/G/Y/R/B/O NT_005646AC092503280539423        
S/G/Y/R/B/O NT_005646AC025081282495101        
S/G/Y/R/B/O NT_005646AC092415282587463        
S/G/Y/R/B/O NT_005646AC022187284387821        
S/G/Y/R/B/O NT_005646AC098973284610723AFM095XC1346.90352.601 AC098973
S/G/Y/R/B/O NT_005646AC098614286392283        
S/G/Y/R/B/O NT_005646AC084418288396071        
S/G/Y/R/B/O NT_005646AC025612288435991        
S/G/Y/R/B/O NT_005646AC099535288606291        
S/G/Y/R/B/O NT_005646AC098615289963611AFM015XD7345.00350.251 AC098615
S/G/Y/R/B/O NT_005646AC098615289967561AFM312YF5344.90350.941 AC098615
S/G/Y/R/B/O NT_005646AC099754290928933        
S/G/Y/R/B/O NT_005646AC114877292360671        
S/G/Y/R/B/O NT_005646AC103922292902053        
S/G/Y/R/B/O NT_005646AC027438294345021        
S/G/Y/R/B/O NT_005646AC092501294589583        
S/G/Y/R/B/O NT_005646AC021068296182893        
S/G/Y/R/B/O NT_005646AC092795297074973        
S/G/Y/R/B/O NT_005646AC092796298281613        
S/G/Y/R/B/O NT_005646AC099048299520183AFM320WC9349.50355.111AC084000, AC084000, AC099048
S/G/Y/R/B/O NT_005646AC084000300554821        
S/G/Y/R/B/O NT_005646AC097633300704231        
S/G/Y/R/B/O NT_005646AC027512307526551AFMA108YC1349.40355.111AC011724, AC011724, AC027512
S/G/Y/R/B/O NT_005646AC093558301489843        
S/G/Y/R/B/O NT_005646AC098931302872153        
S/G/Y/R/B/O NT_005646AC093555304433003        
S/G/Y/R/B/O NT_005646AC024936306037911        
S/G/Y/R/B/O NT_005646AC011724307436761        
S/G/Y/R/B/O NT_005646AC025614308895173        
S/G/Y/R/B/O NT_005646AC116035310596641        
S/G/Y/R/B/O NT_005646AC011040311326591        
S/G/Y/R/B/O NT_005646AC096921312691913AFMA090ZB1350.40356.071AC011040, AC011040
S/G/Y/R/B/O NT_005646AC096921313303723AFMA176WC1351.00356.691AC021650, AC026959, AC021650, AC026959, AC096921
S/G/Y/R/B/O NT_005646AC026959313542671        
S/G/Y/R/B/O NT_005646AC021650313727401        
S/G/Y/R/B/O NT_005646AC095029314520471        
S/G/Y/R/B/O NT_005646AC107624316319531D3S1211  357.921AC023597, AC099779, AC023597, AC099779, AC107624
S/G/Y/R/B/O NT_005646AC099779316930833        


  NT_005646 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_005646AC023597317914721        
S/G/Y/R/B/O NT_005646AC098647318124091        
S/G/Y/R/B/O NT_005646AC115283318251891        
S/G/Y/R/B/O NT_005646AC094019327921341GATA27C08  357.921AC023523, AC023523, AC094019
S/G/Y/R/B/O NT_005646AC023523319193861        
S/G/Y/R/B/O NT_005646AC108485319687041        
S/G/Y/R/B/O NT_005646AC107620320516981        
S/G/Y/R/B/O NT_005646AC092024321602901        
S/G/Y/R/B/O NT_005646AC104643323169003        
S/G/Y/R/B/O NT_005646AC099540324764271        
S/G/Y/R/B/O NT_005646AC078781326942781        
S/G/Y/R/B/O NT_005646AC097639328099461        
S/G/Y/R/B/O NT_005646AC103558328814343        
S/G/Y/R/B/O NT_005646AC098475330559733        
S/G/Y/R/B/O NT_005646AC104306331246903        
S/G/Y/R/B/O NT_005646AC046140333028921        
S/G/Y/R/B/O NT_005646AC012520333052481        
S/G/Y/R/B/O NT_005646AC026763333084901