Chromosome 3 - Genetic Maps - Single Contig

Chromosome 3 - Genetic Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_005927	NT_029265	NT_028123	NT_006044	NT_022517	NT_005507	NT_022516	NT_005564
NT_005762	NT_005646	NT_028139	NT_033044	NT_005502	NT_022539	NT_022464	NT_005580
NT_033049	NT_005498	NT_006036	NT_005825	NT_029949	NT_005991	NT_005585	NT_022567
NT_028129	NT_005990	NT_030623	NT_022439	NT_006014	NT_033032	NT_005986	NT_033015
NT_033038	NT_022552	NT_005787	NT_033040	NT_022481	NT_005607	NT_033026	NT_005999
NT_005531	NT_022473	NT_022423	NT_005510	NT_022510	NT_022665	NT_028127	NT_022400
NT_005530	NT_029258	NT_022442	NT_005769	NT_005526	NT_022540	NT_022717	NT_005644
NT_022446	NT_005583	NT_033034	NT_005882	NT_033036	NT_022419	NT_006031	NT_022551
NT_022459	NT_033029	NT_022713	NT_022460	NT_033011	NT_022554	NT_022720	NT_005684
NT_005663	NT_033018	NT_022420	NT_033043	NT_022642	NT_005791	NT_022452	NT_022435
NT_033028	NT_022497	NT_022625	NT_005568	NT_022401	NT_033031	NT_026983	NT_022475
NT_033037	NT_022451	NT_005509	NT_005527	NT_033050	NT_030634	NT_033041	NT_005863
NT_022454	NT_022607	NT_022453	NT_025670	NT_030622	NT_033045	NT_022728	NT_031768
NT_019350	NT_022434	NT_029256	NT_022405	NT_022569	NT_006042	NT_022484	NT_005795
NT_015150	NT_022445	NT_030625	NT_005532	NT_029269	NT_022455	NT_029931	NT_033022
NT_029257	NT_005513	NT_005994	NT_030635	NT_022411	NT_005824	NT_033021	NT_005543
NT_005588	NT_006029	NT_022513	NT_005523	NT_033014	NT_006025	NT_022404	NT_005823
NT_033019	NT_022393	NT_025663	NT_005567	NT_030630	NT_005969	NT_033051	NT_025664
NT_005655	NT_022503	NT_022632	NT_033024	NT_022416	NT_022432	NT_033020	NT_033035
NT_033042	NT_005832	NT_022502	NT_005772	NT_019358	NT_005591	NT_005775	NT_022616
NT_005540	NT_029939	NT_005616	NT_005539	NT_022555	NT_005849	NT_005657	NT_005678
NT_005846	NT_005612	NT_033030	NT_022463	NT_022594	NT_022449	NT_022421	NT_005744
NT_022565	NT_022518	NT_005638	NT_022397	NT_022700	NT_022422	NT_025667	NT_033052
NT_022472	NT_033033	NT_022526	NT_022674	NT_022458	NT_022509	NT_005635	NT_033053
NT_005950	NT_022396	NT_005952	NT_022406	NT_022676	NT_029253	NT_030638	NT_005910
NT_022549	NT_033009	NT_005911	NT_005962	NT_031766	NT_005883	NT_005501	NT_005571
NT_033017	NT_033013	NT_029928	NT_033010	NT_005834	NT_005535	NT_033012	NT_033016
NT_022508

NT_005787

Links	Contig	Accession	Chr Start	Phs	STS Marker	Gen Chr	Genethon	Marsh Chr	Marshfield	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_005787	AC068753	55027997	1
S/G/Y/R/B/O	NT_005787	AC092057	55078687	3	AFMB347ZG9	3	69.60	3	72.21	1	AC068753,	AC068753
S/G/Y/R/B/O	NT_005787	AC092057	55122097	3	AFM274YD5	3	69.60	3	72.21	1	AC068753,	AC068753, AC092057
S/G/Y/R/B/O	NT_005787	AC092057	55142397	3	AFMB352XE1	3	69.60	3	72.21	1	AC068753,	AC068753, AC092057
S/G/Y/R/B/O	NT_005787	AC079032	55227355	1
S/G/Y/R/B/O	NT_005787	AC109584	55278273	1
S/G/Y/R/B/O	NT_005787	AC092797	55381447	3	AFMB338ZG9	3	69.60	3	72.21	1	AC079032,	AC079032
S/G/Y/R/B/O	NT_005787	AC092797	55416804	3	AFM340XF1	3	69.60	3	72.21	1		AC092797
S/G/Y/R/B/O	NT_005787	AC104298	55484532	3
S/G/Y/R/B/O	NT_005787	AC092059	55638146	1	AFMA066WD5	3	72.20	3	74.35	1	AC027002,	AC018594, AC021252, AC027002, AC092059, AC093417
S/G/Y/R/B/O	NT_005787	AC016306	55709773	1
S/G/Y/R/B/O	NT_005787	AC027002	55721441	1
S/G/Y/R/B/O	NT_005787	AC016323	55726669	1
S/G/Y/R/B/O	NT_005787	AC068773	55846604	1
S/G/Y/R/B/O	NT_005787	AC107298	55928268	1	AFMA071YD1	3	70.30	3	72.21	1	AC016323, AC068773,	AC016323, AC068773, AC107298
S/G/Y/R/B/O	NT_005787	AC011106	55887223	1
S/G/Y/R/B/O	NT_005787	AC026326	56015880	1
S/G/Y/R/B/O	NT_005787	AC078978	56024009	1
S/G/Y/R/B/O	NT_005787	AC025572	56122390	3	AFM318WC5	3	72.90	3	74.35	1	AC026326, AC078978,	AC026326, AC078978, AC097014
S/G/Y/R/B/O	NT_005787	AC025572	56188411	3	ATA10D01			3	74.35	1	AC078978,	AC025572, AC078978, AC097014
S/G/Y/R/B/O	NT_005787	AC079624	56310588	1
S/G/Y/R/B/O	NT_005787	AC069254	56316086	1
S/G/Y/R/B/O	NT_005787	AC093928	56469313	1	AFMB059WF1	3	75.20	3	76.48	1		AC093928
S/G/Y/R/B/O	NT_005787	AC067759	56334248	1
S/G/Y/R/B/O	NT_005787	AC069438	56387635	1
S/G/Y/R/B/O	NT_005787	AC092418	56522436	1
S/G/Y/R/B/O	NT_005787	AC108040	56747484	1	AFM191VA5	3	75.80	3	77.01	1	AC092418,	AC092418, AC108040
S/G/Y/R/B/O	NT_005787	AC114480	56633852	1
S/G/Y/R/B/O	NT_005787	AC099558	56698225	1
S/G/Y/R/B/O	NT_005787	AC099777	56903976	1
S/G/Y/R/B/O	NT_005787	AC114399	57422441	1	AFM210YC5	3	75.80	3	77.01	1	AC069254,	AC069254
S/G/Y/R/B/O	NT_005787	AC110008	57108663	1
S/G/Y/R/B/O	NT_005787	AC098479	57242510	3	UT439			3	77.01	1	AC079624, AC110008,	AC079624, AC098479, AC110008
S/G/Y/R/B/O	NT_005787	AC098479	57243734	3	GGAA13D09			3	77.01	1	AC079624, AC110008,	AC079624, AC098479, AC110008
S/G/Y/R/B/O	NT_005787	AC104302	57490291	3	AFMA072YB9	3	73.40	3	75.41	1		AC104302
S/G/Y/R/B/O	NT_005787	AC105748	57691309	3	AFMA275ZH1	3	73.50	3	74.88	1		AC105748
S/G/Y/R/B/O	NT_005787	AC105748	57743119	3	GATA87B02			3	75.41	1	AC023558,	AC023558, AC105748
S/G/Y/R/B/O	NT_005787	AC023558	57793494	1
S/G/Y/R/B/O	NT_005787	AC099775	57924528	3	AFMB283YA5	3	74.10	3	75.41	1	AC105753,	AC099775, AC105753
S/G/Y/R/B/O	NT_005787	AC099775	57980272	3	AFMA082WH1	3	74.00	3	75.41	1	AC067759, AC105753,	AC067759, AC099775, AC105753
S/G/Y/R/B/O	NT_005787	AC105753	57983730	3
S/G/Y/R/B/O	NT_005787	AC098478	58001102	1
S/G/Y/R/B/O	NT_005787	AC099781	58212989	1
S/G/Y/R/B/O	NT_005787	AC099559	58393228	3
S/G/Y/R/B/O	NT_005787	AC099327	58555980	1
S/G/Y/R/B/O	NT_005787	AC092050	58590862	3
S/G/Y/R/B/O	NT_005787	AC097358	58753349	1
S/G/Y/R/B/O	NT_005787		-		MFD99			3	77.01	1	AC018353,	AC018352, AC018353