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  Chromosome 15 - RH Maps - Single Contig
 

Chromosome 15 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_010362 NT_024668 NT_033275 NT_033278 NT_033279 NT_010346 NT_010178 NT_026446
NT_030829 NT_024683 NT_010280 NT_024666 NT_010221 NT_010363 NT_024680 NT_033266
NT_010344 NT_030828 NT_010194 NT_010289 NT_010342 NT_010351 NT_024653 NT_010265
NT_033272 NT_010222 NT_010332 NT_033270 NT_010376 NT_010298 NT_010374 NT_024703
NT_024654 NT_029450 NT_019601 NT_010249 NT_033267 NT_010356 NT_010343 NT_024674
NT_033271 NT_024670 NT_033269 NT_033276 NT_033277 NT_010352 NT_024651 NT_010274


  NT_010249
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010249AC073419789279271          
S/G/Y/R/B/O NT_010249AC012291789332801RH7484315300.46    1 AC012291
S/G/Y/R/B/O NT_010249AC012291789333411RH4199315300.03    1 AC012291
S/G/Y/R/B/O NT_010249AC012291789987211RH4845715300.14    1 AC010757, AC012291
S/G/Y/R/B/O NT_010249AC012291790004301RH555091834.43  1824.802AC006211, AC021527, AP001500, AC006211, AC010757, AC012291, AC021527, AP001500, AP002472
S/G/Y/R/B/O NT_010249AC012291790124261RH10356415300.89    1 AC010757, AC012291
S/G/Y/R/B/O NT_010249AC016771796554361WI-5384    15320.101AC048382, AC087732, AC016771, AC048382, AC087732
S/G/Y/R/B/O NT_010249AC087732796595231RH5427215300.78153015.00  1AC016771, AC048382, AC016771, AC048382, AC087732
S/G/Y/R/B/O NT_010249AC087732796797291RH482991734.55    2AC011945, AC016771, AL117352, AC011945, AC016771, AC087732, AF246631, AL117352, AL358784
S/G/Y/R/B/O NT_010249AC087732796802341RH5442915300.14  15320.101AC016771, AC048382, AC016771, AC048382, AC087732, AF244812
S/G/Y/R/B/O NT_010249AC087732796926411RH5408115300.35  15320.201AC016771, AC048382, AC016771, AC048382, AC087732
S/G/Y/R/B/O NT_010249AC087732796926731RH2654115300.46    1AC016771, AC048382, AC016771, AC048382, AC087732
S/G/Y/R/B/O NT_010249AC022684791204952CHLC.GATA86F02    15316.901 AC022684
S/G/Y/R/B/O NT_010249AC022684792580112WI-4314    15318.401AC027807, AC073419, AC022684, AC027807, AC073419
S/G/Y/R/B/O NT_010249AC027807793061992RH6624215298.82    1AC073419, AC027605, AC027807, AC073419
S/G/Y/R/B/O NT_010249AC103965793532313          
S/G/Y/R/B/O NT_010249AC010725795335903RH4483215299.08    5AC005630, AC010724, AC011295, AC012064, AC044860, AC068128, AC090164, AC110291, AC005630, AC010724, AC010725, AC011295, AC012064, AC044860, AC068128, AC073891, AC090164, AC090910, AC110291
S/G/Y/R/B/O NT_010249AC048382797217411          
S/G/Y/R/B/O NT_010249AC005630798551303RH4483215299.08    5AC010724, AC010725, AC011295, AC012064, AC044860, AC068128, AC090164, AC110291, AC005630, AC010724, AC010725, AC011295, AC012064, AC044860, AC068128, AC073891, AC090164, AC090910, AC110291
S/G/Y/R/B/O NT_010249 - RH1010915297.71    1AC022558, AC018910, AC022558
S/G/Y/R/B/O NT_010249 - RH10192615285.44    1AC068870, AC068870
S/G/Y/R/B/O NT_010249 - RH10201215298.66    0 More than 15
S/G/Y/R/B/O NT_010249 - RH10257615285.74    1AC025219, AC025219
S/G/Y/R/B/O NT_010249 - RH10294915287.73    1AC026956, AC037480, AC026956, AC037480
S/G/Y/R/B/O NT_010249 - RH1029715282.76    1AC012337, AC087761, AC010074, AC012337, AC087761, AL109671
S/G/Y/R/B/O NT_010249 - RH10305015297.18    1AC024270, AC024270, AC069400
S/G/Y/R/B/O NT_010249 - RH10323515288.59    1AC027808, AC068870, AC027808, AC068870
S/G/Y/R/B/O NT_010249 - RH10397015297.29    1AC022558, AC018910, AC022558
S/G/Y/R/B/O NT_010249 - RH1744415290.46    1AC068870, AC068870
S/G/Y/R/B/O NT_010249 - RH2507115297.29    2AC022558, AC044907, AC022558, AC044907
S/G/Y/R/B/O NT_010249 - RH2508715297.39    1AC024270, AC018910, AC024270, AC069400
S/G/Y/R/B/O NT_010249 - RH2530915287.76    1AC068870, AC068870
S/G/Y/R/B/O NT_010249 - RH2626815300.03    0  
S/G/Y/R/B/O NT_010249 - RH2636215289.42    1AC037480, AC037480
S/G/Y/R/B/O NT_010249 - RH2654215285.64    2AC023034, AC058811, AC058811, AC104041, AC104041, AC023034, AC058811, AC058811, AC104041, AC104041
S/G/Y/R/B/O NT_010249 - RH2684515287.97    1AC015715, AC087738, AC010673, AC015715, AC087738
S/G/Y/R/B/O NT_010249 - RH2843215283.73    1AC108450, AC108451, AC108450, AC108451
S/G/Y/R/B/O NT_010249 - RH2860615288.07    1AC025483, AC024701, AC025483
S/G/Y/R/B/O NT_010249 - RH2865115289.94    1AC037480, AC037480
S/G/Y/R/B/O NT_010249 - RH384915285.64    1AC025219, AC103976, AC025219, AC103976
S/G/Y/R/B/O NT_010249 - RH3946715290.46    1AC103858, AC103858, AF077011
S/G/Y/R/B/O NT_010249 - RH3952415290.46    1AC103858, AC109809, AC103858, AC109809
S/G/Y/R/B/O NT_010249 - RH3953615297.71    1AC022558, AC018910, AC022558
S/G/Y/R/B/O NT_010249 - RH3955815297.82    1AC022558, AC024270, AC018910, AC022558, AC024270
S/G/Y/R/B/O NT_010249 - RH3956115298.56    1AC044907, AC044907
S/G/Y/R/B/O NT_010249 - RH4198915298.87    2AC022558, AC022558
S/G/Y/R/B/O NT_010249 - RH4240215297.82    1AC024270, AC018910, AC024270, AC069400
S/G/Y/R/B/O NT_010249 - RH4406215282.91    0  
S/G/Y/R/B/O NT_010249 - RH4470715285.64    0AC025219, AC025219
S/G/Y/R/B/O NT_010249 - RH4481815283.73    1AC108450, AC108451, AC108450, AC108451


  NT_010249 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_010249 - RH4518215297.39    1AC044907, AC044907
S/G/Y/R/B/O NT_010249 - RH4569915297.29    1AC044907, AC105339, AC044907, AC105339
S/G/Y/R/B/O NT_010249 - RH4586715287.76    1AC037480, AC037480
S/G/Y/R/B/O NT_010249 - RH4759915297.18    0AC005630, AC010724, AC010725, AC011295, AC011295, AC012064, AC044860, AC068128, AC108000, AC110291, AC005630, AC010724, AC010725, AC011295, AC011295, AC012064, AC044860, AC068128, AC073891, AC090910, AC108000, AC110291
S/G/Y/R/B/O NT_010249 - RH4789315285.64    1AC109809, AC109809
S/G/Y/R/B/O NT_010249 - RH4831515285.54    0  
S/G/Y/R/B/O NT_010249 - RH4862715282.91    1AC016705, AC027478, AC108451, AC016705, AC027478, AC108451
S/G/Y/R/B/O NT_010249 - RH4899815293.10    1AC037480, AC037480
S/G/Y/R/B/O NT_010249 - RH5400615288.70    1AC068870, AC068870
S/G/Y/R/B/O NT_010249 - RH5405615296.55    1AC015715, AC015715
S/G/Y/R/B/O NT_010249 - RH5407015297.29    1AC024270, AC018910, AC024270, AC069400
S/G/Y/R/B/O NT_010249 - RH5407215289.42    1AC037480, AC037480
S/G/Y/R/B/O NT_010249 - RH5422615288.17    1AC023302, AC027808, AC023302, AC027808
S/G/Y/R/B/O NT_010249 - RH5422915285.64    1AC027808, AC027808
S/G/Y/R/B/O NT_010249 - RH5423015290.46    1AC103858, AC103858
S/G/Y/R/B/O NT_010249 - RH5424015297.29    1AC011140, AC105339, AC011140, AC105339
S/G/Y/R/B/O NT_010249 - RH5425015293.20    1AC037480, AC037480
S/G/Y/R/B/O NT_010249 - RH5427715290.46    1AC025219, AC103976, AC025219, AC103976
S/G/Y/R/B/O NT_010249 - RH5438315287.73    1AC068870, AC068870
S/G/Y/R/B/O NT_010249 - RH5441215285.54    1AC103858, AC103858, AF077011
S/G/Y/R/B/O NT_010249 - RH5443215285.84    1AC103858, AC109809, AC103858, AC109809
S/G/Y/R/B/O NT_010249 - RH5443815288.59    1AC103976, AC104041, AC103976, AC104041
S/G/Y/R/B/O NT_010249 - RH5445015297.29    1AC011140, AC105339, AC011140, AC105339
S/G/Y/R/B/O NT_010249 - RH5446415297.39    1AC022558, AC022558
S/G/Y/R/B/O NT_010249 - RH6578115299.03    0 More than 15
S/G/Y/R/B/O NT_010249 - RH6636015282.81    1AC108450, AC108451, AC108450, AC108451
S/G/Y/R/B/O NT_010249 - RH6669015297.50    1AC011140, AC105339, AC011140, AC105339
S/G/Y/R/B/O NT_010249 - RH6669115290.46    1AC068870, AC068870
S/G/Y/R/B/O NT_010249 - RH6957815288.90    1AC103858, AC103858, AF077011
S/G/Y/R/B/O NT_010249 - RH6985715289.42    1AC027808, AC068870, AC027808, AC068870
S/G/Y/R/B/O NT_010249 - RH7095415297.50    1AC015715, AC087738, AC010673, AC015715, AC087738
S/G/Y/R/B/O NT_010249 - RH7145215295.61    1AC010724, AC068128, AC110291, AC010724, AC068128, AC110291, M18000
S/G/Y/R/B/O NT_010249 - RH7523615283.63    1AC108450, AC108451, AC108450, AC108451
S/G/Y/R/B/O NT_010249 - RH7609015288.96    1AC024270, AC018910, AC024270
S/G/Y/R/B/O NT_010249 - RH7609315297.39    1AC044907, AC105339, AC044907, AC105339
S/G/Y/R/B/O NT_010249 - RH7649215297.82    0  
S/G/Y/R/B/O NT_010249 - RH7657915288.80    1AC103858, AC109809, AC103858, AC109809
S/G/Y/R/B/O NT_010249 - RH7926215287.76    1AC027808, AC027808
S/G/Y/R/B/O NT_010249 - RH9129515297.18    1AC015715, AC087738, AC010673, AC015715, AC087738
S/G/Y/R/B/O NT_010249 - RH9280915283.80    1AC108451, AC108451
S/G/Y/R/B/O NT_010249 - RH9296615285.64    1AC026956, AC037480, AC026956, AC037480
S/G/Y/R/B/O NT_010249 - RH9351815290.46    1AC103976, AC104041, AC103976, AC104041
S/G/Y/R/B/O NT_010249 - RH9873615297.29    2AC022558, AC044907, AC022558, AC044907