Chromosome 15 - RH Maps - Single Contig

Chromosome 15 - RH Maps - Single Contig

Description of this page

Line color code:

White: no markers placed on this accession
Blue: marker placement on STS map consistent with alignment of assembly contigs
Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
Red: marker placed on different chromosome in STS map
Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig

NT_010362	NT_024668	NT_033275	NT_033278	NT_033279	NT_010346	NT_010178	NT_026446
NT_030829	NT_024683	NT_010280	NT_024666	NT_010221	NT_010363	NT_024680	NT_033266
NT_010344	NT_030828	NT_010194	NT_010289	NT_010342	NT_010351	NT_024653	NT_010265
NT_033272	NT_010222	NT_010332	NT_033270	NT_010376	NT_010298	NT_010374	NT_024703
NT_024654	NT_029450	NT_019601	NT_010249	NT_033267	NT_010356	NT_010343	NT_024674
NT_033271	NT_024670	NT_033269	NT_033276	NT_033277	NT_010352	NT_024651	NT_010274

NT_010332

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_010332	AC048383	66229459	1	RH27159	15	249.02					1	AC009715, AC011648,	AC009715, AC011648, AC048383
S/G/Y/R/B/O	NT_010332	AC009715	66249458	1
S/G/Y/R/B/O	NT_010332	AC009434	66324321	2
S/G/Y/R/B/O	NT_010332	AC087699	67324981	1	RH98418	15	260.94					1		AC010076, AC087699
S/G/Y/R/B/O	NT_010332	AC087699	67327327	1	RH8757			15	2385.00			1		AC087699
S/G/Y/R/B/O	NT_010332	AC011648	66558103	1	RH54423	15	247.04	15	2353.00	15	243.40	1	AC009715,	AC009715, AC011648
S/G/Y/R/B/O	NT_010332	AC011648	66558177	1	RH44729	15	247.46					1	AC009715,	AC009715, AC011648
S/G/Y/R/B/O	NT_010332	AC011648	66568861	1	AFMA142YC1					15	240.20	1	AC009715,	AC009715, AC011648
S/G/Y/R/B/O	NT_010332	AC026583	66725350	2	WI-10764					15	238.60	1	AC021958, AC068327,	AC021958, AC026583, AC068327
S/G/Y/R/B/O	NT_010332	AC026583	66741988	2	RH93831	15	249.12					1	AC021958, AC068327,	AC021958, AC026583, AC068327
S/G/Y/R/B/O	NT_010332	AC021958	66767164	1
S/G/Y/R/B/O	NT_010332	AC068327	66802508	2
S/G/Y/R/B/O	NT_010332	AC018987	66856591	2	WI-3390					15	237.10	1	AC068327,	AC018987, AC068327
S/G/Y/R/B/O	NT_010332	AC021818	66895968	2
S/G/Y/R/B/O	NT_010332	AC009677	67078420	1	RH42671	15	243.25					1		AC009677
S/G/Y/R/B/O	NT_010332	AC009677	67078420	1	D15S216					15	235.30	1		AC009677
S/G/Y/R/B/O	NT_010332	AC009677	67078420	1	RH33856			15	2349.00			1		AC009677
S/G/Y/R/B/O	NT_010332	AC011725	67239640	1	RH74400	X	74.75					2		AC073494
S/G/Y/R/B/O	NT_010332	AC009269	67406501	2	RH39513	15	256.91					1	AC090868,	AC009269, AC074236, AC090868
S/G/Y/R/B/O	NT_010332	AC009269	67428827	2	RH39481	15	257.01					1	AC090868,	AC009269, AC074236, AC090868
S/G/Y/R/B/O	NT_010332	AC009269	67501906	2	RH54215	15	253.46			15	245.30	1	AC090868,	AC009269, AC090868
S/G/Y/R/B/O	NT_010332	AC090868	67526961	2	RH16855	15	257.01					1		AC074236, AC090868
S/G/Y/R/B/O	NT_010332	AC090868	67528293	2	RH54001	15	249.12			15	243.40	1		AC090868
S/G/Y/R/B/O	NT_010332	AC090868	67551697	2	WI-14661					15	245.40	1	AC084703,	AC074236, AC084703, AC090868
S/G/Y/R/B/O	NT_010332	AC090868	67551697	2	RH54025	15	255.50					1	AC084703,	AC074236, AC084703, AC090868
S/G/Y/R/B/O	NT_010332	AC084703	67592063	3	WI-9851					15	243.50	1	AC013752,	AC013752, AC084703
S/G/Y/R/B/O	NT_010332	AC013752	67662187	2
S/G/Y/R/B/O	NT_010332	AC068181	67719848	3	RH54089	15	253.16			15	245.10	1	AC013752,	AC013752, AC068181
S/G/Y/R/B/O	NT_010332	AC068181	67719865	3	RH54106	15	248.40			15	241.80	1	AC013752,	AC013752, AC068181
S/G/Y/R/B/O	NT_010332	AC068181	67720203	3	RH93029	15	253.16					1	AC013752,	AC013752, AC068181
S/G/Y/R/B/O	NT_010332	AC068181	67780655	3	RH92560	15	251.74					1		AC068181
S/G/Y/R/B/O	NT_010332	AC015711	67949752	3	RH32923			15	2407.00	15	246.60	1	AC064799,	AC015711, AC064799
S/G/Y/R/B/O	NT_010332	AC015711	67949752	3	RH54196	15	255.26					1	AC064799,	AC015711, AC064799
S/G/Y/R/B/O	NT_010332	AC015711	67949880	3	RH44717	15	251.74					1	AC064799,	AC015711, AC064799
S/G/Y/R/B/O	NT_010332	AC064799	67964812	2	RH54023	15	253.26			15	246.80	1		AC064799
S/G/Y/R/B/O	NT_010332	AC013764	68058582	1
S/G/Y/R/B/O	NT_010332	AC105132	68088607	2	RH44673	15	255.26					1	AC013764,	AC013764, AC105132
S/G/Y/R/B/O	NT_010332	AC105132	68088665	2	RH54332	15	252.15			15	240.30	1	AC013764,	AC013764, AC105132
S/G/Y/R/B/O	NT_010332	AC108861	68147625	2
S/G/Y/R/B/O	NT_010332	AC104943	68200736	2
S/G/Y/R/B/O	NT_010332	AC026636	68328231	1	WI-18330					15	246.40	1	AC104943,	AC026636, AC104943
S/G/Y/R/B/O	NT_010332	AC026636	68328231	1	RH54074	15	254.68					1	AC104943,	AC026636, AC104943
S/G/Y/R/B/O	NT_010332	AC026636	68330188	1	RH46217	15	251.74					1	AC104943,	AC026636, AC104943
S/G/Y/R/B/O	NT_010332	AC104938	68387411	2
S/G/Y/R/B/O	NT_010332	AC023120	68471777	1	RH94031	15	252.15					1	AC084299, AC104938,	AC023120, AC084299, AC104938
S/G/Y/R/B/O	NT_010332	AC023120	68536295	1	RH79619	15	255.46					1	AC084299, AC104938,	AC023120, AC084299, AC104938
S/G/Y/R/B/O	NT_010332	AC023120	68559465	1	SGC31120					15	246.90	1	AC084299, AC104938,	AC023120, AC084299, AC104938
S/G/Y/R/B/O	NT_010332	AC023120	68559465	1	RH54038	15	255.26					1	AC084299, AC104938,	AC023120, AC084299, AC104938
S/G/Y/R/B/O	NT_010332	AC084299	68511037	1	RH54050	15	253.26			15	246.40	1	AC023120, AC104938,	AC023120, AC084299, AC104938, AJ276674
S/G/Y/R/B/O	NT_010332	AC084299	68518949	1	WI-17911					15	246.90	1	AC023120, AC104938,	AC023120, AC084299, AC104938, AJ276674

NT_010332 (cont)

Links	Contig	Accession	Chr Start	Phs	STS Marker	GM Chr	GM99 GB4	WI Chr	WI	G3 Chr	SHGC G3	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_010332	AC084299	68518949	1	RH54078	15	255.26					1	AC023120, AC104938,	AC023120, AC084299, AC104938, AJ276674
S/G/Y/R/B/O	NT_010332	AC084299	68519649	1	RH14515			15	2420.00	15	246.90	1	AC023120, AC104938,	AC023120, AC084299, AC104938, AJ276674
S/G/Y/R/B/O	NT_010332	AC084299	68519649	1	RH54166	15	256.69					1	AC023120, AC104938,	AC023120, AC084299, AC104938, AJ276674
S/G/Y/R/B/O	NT_010332	AC022872	68623422	2	RH76346	15	256.65					1	AC023120, AC090557,	AC022872, AC023120, AC090557
S/G/Y/R/B/O	NT_010332	AC022872	68678088	2	RH39459	15	255.36					1	AC090557,	AC022872, AC090557
S/G/Y/R/B/O	NT_010332	AC022872	68678094	2	RH66981	15	256.87					1	AC090557,	AC022872, AC090557
S/G/Y/R/B/O	NT_010332	AC022872	68698700	2	RH65452	15	253.26					1	AC090557,	AC022872, AC090454, AC090557
S/G/Y/R/B/O	NT_010332	AC022872	68735092	2	RH68081	15	255.98					1	AC090557,	AC022872, AC090454, AC090557
S/G/Y/R/B/O	NT_010332	AC090557	68737057	1
S/G/Y/R/B/O	NT_010332	AC020779	68781417	3	RH34286			15	2436.00	15	245.70	1		AC020779, AC090454
S/G/Y/R/B/O	NT_010332	AC020779	68781417	3	RH49055	15	253.26	15	2425.00			1		AC020779, AC090454
S/G/Y/R/B/O	NT_010332	AC020779	68829225	3	SGC33966					15	246.90	1		AC020779, AC090454
S/G/Y/R/B/O	NT_010332	AC020779	68829225	3	RH54169	15	256.69					1		AC020779, AC090454
S/G/Y/R/B/O	NT_010332	AC020779	68829420	3	RH39546	15	256.87					1		AC020779, AC090454
S/G/Y/R/B/O	NT_010332	AC020779	68848512	3	RH66304	15	251.74					1		AC020779, AC090454
S/G/Y/R/B/O	NT_010332	AC020779	68848618	3	RH39471	15	256.87					1		AC020779, AC090454
S/G/Y/R/B/O	NT_010332	AC020779	68887644	3	RH67936	15	260.43					3	AC021500, AC084227, AC105218,	AC020779, AC021500, AC084227, AC091121, AC105218, AF276756, X56494
S/G/Y/R/B/O	NT_010332	AC020779	68887762	3	RH48501	15	252.15					1		AC020779, AC091121, X56494
S/G/Y/R/B/O	NT_010332	AC020779	68894257	3	RH70518	15	256.69					1		AC020779, AC091121, X56494
S/G/Y/R/B/O	NT_010332	AC020779	68920443	3	RH68647	15	256.69					1	AC009690,	AC009690, AC020779, AC091121, X56494
S/G/Y/R/B/O	NT_010332	AC020779	68920470	3	RH54278	15	253.36	15	2461.00	15	246.90	1	AC009690,	AC009690, AC020779, AC091121, X56494
S/G/Y/R/B/O	NT_010332	AC009690	68931219	3	RH33236			15	2467.00			1		AC009690, AC091121
S/G/Y/R/B/O	NT_010332	AC009690	68931357	3	RH44558	15	256.76					1		AC009690, AC091121
S/G/Y/R/B/O	NT_010332	AC009690	68973435	3	RH77785	15	256.69					1		AC009690, AC091121
S/G/Y/R/B/O	NT_010332	AC009690	68981642	3	RH69326	15	256.69					1		AC009690, AC091121
S/G/Y/R/B/O	NT_010332	AC009690	69019548	3	RH37990			15	2490.00			1		AC009690, AC091121
S/G/Y/R/B/O	NT_010332	AC009690	69032111	3	RH98547	15	253.26					1		AC009690, AC091121
S/G/Y/R/B/O	NT_010332	AC009690	69033881	3	RH54390	15	253.26	15	2493.00	15	246.80	1		AC009690, AC091121
S/G/Y/R/B/O	NT_010332	AC009690	69034044	3	RH44590	15	256.69					1		AC009690
S/G/Y/R/B/O	NT_010332	AC009690	69048325	3	RH54340	15	253.26	15	2497.00	15	246.80	1		AC009690
S/G/Y/R/B/O	NT_010332	AC009690	69075742	3	RH65407	15	253.26					1	AC079322,	AC009690, AC079322
S/G/Y/R/B/O	NT_010332	AC079322	69096361	1	RH92065	15	253.26					1	AC016659,	AC012481, AC016659, AC079322
S/G/Y/R/B/O	NT_010332	AC079322	69153741	1	WI-16698					15	246.90	1	AC016659, AC026012,	AC012481, AC016659, AC026012, AC079322
S/G/Y/R/B/O	NT_010332	AC079322	69153741	1	RH54410	15	255.36					1	AC016659, AC026012,	AC012481, AC016659, AC026012, AC079322
S/G/Y/R/B/O	NT_010332	AC016659	69194131	3	RH93460	15	252.15					1	AC026012, AC079322,	AC012481, AC016659, AC026012, AC079322
S/G/Y/R/B/O	NT_010332	AC016659	69220121	3	RH77925	15	253.26					1	AC026012, AC079322,	AC012481, AC016659, AC026012, AC079322
S/G/Y/R/B/O	NT_010332	AC026012	69273576	1	RH37988			15	2510.00			1		AC026012
S/G/Y/R/B/O	NT_010332	AC026012	69273719	1	RH25751	15	256.87					1		AC026012
S/G/Y/R/B/O	NT_010332	AC026012	69274691	1	RH33148			15	2510.00	15	247.20	1		AC026012
S/G/Y/R/B/O	NT_010332	AC026012	69274691	1	RH54458	15	255.26					1		AC026012
S/G/Y/R/B/O	NT_010332	AC026012	69274692	1	RH47216	15	253.26					1		AC026012
S/G/Y/R/B/O	NT_010332	AC026012	69278848	1	RH26696	15	252.15					1		AC026012
S/G/Y/R/B/O	NT_010332	AC026012	69279295	1	RH54457	15	251.74			15	238.60	1		AC026012
S/G/Y/R/B/O	NT_010332	AC026012	69279910	1	RH10982	15	256.76					1		AC026012
S/G/Y/R/B/O	NT_010332	AC026012	69280142	1	RH24958	15	253.26					1		AC026012
S/G/Y/R/B/O	NT_010332	AC026012	69296873	1	RH54194	15	252.15			15	238.60	1		AC026012
S/G/Y/R/B/O	NT_010332		-		RH102007	15	250.94					1	AC015720,	AC015720
S/G/Y/R/B/O	NT_010332		-		RH103602	15	254.48					0
S/G/Y/R/B/O	NT_010332		-		RH44099	15	251.84					1	AC015720,	AC015720
S/G/Y/R/B/O	NT_010332		-		RH48644	15	251.74					0

NT_010332 (cont)

Links	Contig	Chr Start	STS Marker	GM Chr	GM99 GB4	Plc	Other Accessions in Assembly	All Accessions
S/G/Y/R/B/O	NT_010332	-	RH54102	15	252.15	0
S/G/Y/R/B/O	NT_010332	-	RH54134	15	252.15	1	AC091230,	AC091230, AF253322
S/G/Y/R/B/O	NT_010332	-	RH54213	15	251.34	0
S/G/Y/R/B/O	NT_010332	-	RH54293	15	248.85	1	AC015720,	AC015720
S/G/Y/R/B/O	NT_010332	-	RH54393	15	252.15	1	AC013486, AC108137,	AC013486, AC108137
S/G/Y/R/B/O	NT_010332	-	RH54396	15	251.84	0		AF227218
S/G/Y/R/B/O	NT_010332	-	RH66842	15	247.46	0
S/G/Y/R/B/O	NT_010332	-	RH69961	15	250.94	1	AC020705, AC091230,	AC020705, AC091230, X74765
S/G/Y/R/B/O	NT_010332	-	RH77746	15	251.81	0
S/G/Y/R/B/O	NT_010332	-	RH77786	15	254.48	0