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  Chromosome 15 - RH Maps - Single Contig
 

Chromosome 15 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_010362 NT_024668 NT_033275 NT_033278 NT_033279 NT_010346 NT_010178 NT_026446
NT_030829 NT_024683 NT_010280 NT_024666 NT_010221 NT_010363 NT_024680 NT_033266
NT_010344 NT_030828 NT_010194 NT_010289 NT_010342 NT_010351 NT_024653 NT_010265
NT_033272 NT_010222 NT_010332 NT_033270 NT_010376 NT_010298 NT_010374 NT_024703
NT_024654 NT_029450 NT_019601 NT_010249 NT_033267 NT_010356 NT_010343 NT_024674
NT_033271 NT_024670 NT_033269 NT_033276 NT_033277 NT_010352 NT_024651 NT_010274


  NT_024654
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_024654AC103975725134832RH4687815274.74    1 AC022748, AC022748, AC103975
S/G/Y/R/B/O NT_024654AC103975726908832WI-4844    15297.701 AC103975
S/G/Y/R/B/O NT_024654AC067863725800651RH10348915275.88    1AC103975, AC067863, AC103975
S/G/Y/R/B/O NT_024654AC067863770363971RH3950015273.04    1AC027228, AC027228, AC067863
S/G/Y/R/B/O NT_024654AC067863770385991RH33705  152790.00  1AC027228, AC027228, AC067863
S/G/Y/R/B/O NT_024654AC067863771212341RH9863315273.83    1 AC067863
S/G/Y/R/B/O NT_024654AC067863771237481RH7065015273.30    1 AC067863
S/G/Y/R/B/O NT_024654AC067863771238211RH7587915272.46    1 AC067863
S/G/Y/R/B/O NT_024654AC067863771238631RH4701115274.74    1 AC067863
S/G/Y/R/B/O NT_024654AC011944727411921RH4457015274.53    1 AC011944
S/G/Y/R/B/O NT_024654AC015970727565371RH7976  152834.00  1AC011944, AC011944, AC015970
S/G/Y/R/B/O NT_024654AC015970727565411RH8750  152825.00  1AC011944, AC011944, AC015970
S/G/Y/R/B/O NT_024654AC015970727566081RH3959215274.78    1AC011944, AC011944, AC015970
S/G/Y/R/B/O NT_024654AC015970727624731RH10354315274.47    1AC011944, AC104231, AC011944, AC015970, AC104231
S/G/Y/R/B/O NT_024654AC104231727947122RH5412315275.78152839.0015298.601AC011944, AC015970, AC011944, AC015970, AC104231
S/G/Y/R/B/O NT_024654AC104231727947342RH2562915273.19    1AC011944, AC015970, AC011944, AC015970, AC104231
S/G/Y/R/B/O NT_024654AC104231728150612RH4614115274.85    1AC011944, AC015970, AC011944, AC015970, AC104231
S/G/Y/R/B/O NT_024654AC105231732588662RH4815915274.85    1AC027811, AC010866, AC027811, AC105231, AL356482
S/G/Y/R/B/O NT_024654AC105231732667932WI-5904    15300.601AC027811, AC010866, AC027811, AC105231, AL356482
S/G/Y/R/B/O NT_024654AC105231733746732RH5435515273.36  15300.801 AC105231, AL356482
S/G/Y/R/B/O NT_024654AC069082729665061RH5436915274.85  15298.701 AC069082
S/G/Y/R/B/O NT_024654AC069082729665551RH998815272.61    1 AC069082
S/G/Y/R/B/O NT_024654AC011797731432323RH5421915272.61  15300.401AC027811, AC011797, AC027811
S/G/Y/R/B/O NT_024654AC027811731676383RH5417315274.85  15299.401 AC027811
S/G/Y/R/B/O NT_024654AC027811731678013RH4410415273.04    1 AC027811
S/G/Y/R/B/O NT_024654AC027811731678483RH2561015274.85    1 AC027811
S/G/Y/R/B/O NT_024654AC027811731679343RH7800615274.85    1 AC027811
S/G/Y/R/B/O NT_024654AC027811731765313RH7500915276.93    1 AC010866, AC027811
S/G/Y/R/B/O NT_024654AC015871732977101RH5444315277.54152864.0015301.901AC090270, AC090501, AC010672, AC015871, AC090270, AC090501
S/G/Y/R/B/O NT_024654AC015871732978121RH3958415276.09    2AC090270, AC090501, AC090501, AC010672, AC010672, AC015871, AC090270, AC090501, AC090501
S/G/Y/R/B/O NT_024654AC015871732978131RH6862815275.70    2AC090270, AC090501, AC090501, AC010672, AC010672, AC015871, AC090270, AC090501, AC090501
S/G/Y/R/B/O NT_024654AC015871738017281RH3958415276.09    2AC090270, AC090501, AC090501, AC010672, AC010672, AC015871, AC090270, AC090501, AC090501
S/G/Y/R/B/O NT_024654AC015871738017291RH6862815275.70    2AC090270, AC090501, AC090501, AC010672, AC010672, AC015871, AC090270, AC090501, AC090501
S/G/Y/R/B/O NT_024654AC015871738017321RH9368615276.51    1AC090501, AC010672, AC015871, AC090501
S/G/Y/R/B/O NT_024654AC090501732772081          
S/G/Y/R/B/O NT_024654AC069320769511061RH5403715281.92  15306.802AC092701, AC010074, AC092701
S/G/Y/R/B/O NT_024654AC092701769563751RH9437315282.71    2AC069320, AC087761, AC010074, AC069320, AC087761, AC092701
S/G/Y/R/B/O NT_024654AC090270733400051RH7031415276.09    1AC069320, AC069320, AC090270
S/G/Y/R/B/O NT_024654AC023968734373573          
S/G/Y/R/B/O NT_024654AC026826736109432          
S/G/Y/R/B/O NT_024654AC021483737163082RH7442115279.67    1AC090501, AC010672, AC073279, AC090501
S/G/Y/R/B/O NT_024654AC021483737464052RH7783315278.06    1AC090501, AC010672, AC021483, AC090501
S/G/Y/R/B/O NT_024654AC021483737477602RH5425915277.54  15301.901AC090501, AC010672, AC021483, AC090501
S/G/Y/R/B/O NT_024654AC021483737477712RH7891215280.77    1AC090501, AC010672, AC021483, AC090501
S/G/Y/R/B/O NT_024654AC021483737479862RH1764815276.09    1AC090501, AC010672, AC021483, AC090501
S/G/Y/R/B/O NT_024654AC108000739472562RH9209115272.87    2AC044860, AC090260, AC104758, AC044860, AC090260, AC104758, AC108000
S/G/Y/R/B/O NT_024654AC108000739848272RH32249  151110.00  2AC011295, AC021148, AC011295, AC021148, AC069481, AC108000, U09954
S/G/Y/R/B/O NT_024654AC104758740399402RH10324415270.79    4AC009712, AC010931, AC016276, AC068338, AC104579, AC009712, AC010931, AC016276, AC068338, AC104579, AC104758, AF266285
S/G/Y/R/B/O NT_024654AC104579740562892          
S/G/Y/R/B/O NT_024654AC016276741054821          


  NT_024654 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_024654AC090260741289871RH9209115272.87    2AC044860, AC104758, AC108000, AC044860, AC090260, AC104758, AC108000
S/G/Y/R/B/O NT_024654AC090260741306541RH5422815272.46  15292.001AC015557, AC016276, AC104758, AC015557, AC016276, AC090260, AC104758
S/G/Y/R/B/O NT_024654AC090260741306741RH6686515273.25    1 AC090260
S/G/Y/R/B/O NT_024654AC090260746518541RH7628715272.24    1AC015557, AC015557, AC090260
S/G/Y/R/B/O NT_024654AC090260746530741RH5400415270.05  15288.601AC015557, AC015557, AC090260
S/G/Y/R/B/O NT_024654AC090260746545591RH10224615270.69    1AC015557, AC015557, AC090260
S/G/Y/R/B/O NT_024654AC015557742405181RH3945715272.56    1AC090260, AC015557, AC090260
S/G/Y/R/B/O NT_024654AC015557742407831RH5421615272.77  15284.701AC090260, AC015557, AC090260
S/G/Y/R/B/O NT_024654AC015557746240141RH6618415273.67    1AC090260, AC090260
S/G/Y/R/B/O NT_024654AC105133742722472          
S/G/Y/R/B/O NT_024654AC104573743584342          
S/G/Y/R/B/O NT_024654AC110607743745732          
S/G/Y/R/B/O NT_024654AC107883744522182RH5426215268.08152697.0015299.601 AC107883
S/G/Y/R/B/O NT_024654AC107883744722662RH10250215271.44    1 AC107883
S/G/Y/R/B/O NT_024654AC107883744748032RH4408315269.53    1 AC107883
S/G/Y/R/B/O NT_024654AC107883745212952RH2502015269.95    2AC016693, AC087465, AC016693, AC087465, AC107883
S/G/Y/R/B/O NT_024654AC107883745683982RH1739  152715.00  1AC090181, AC090181, AC107883
S/G/Y/R/B/O NT_024654AC066609744842311RH8328  152691.00  2AC051643, AC090177, AC090181, AC051643, AC066609, AC090177, AC090181
S/G/Y/R/B/O NT_024654AC066609744845891RH1742915269.56    2AC051643, AC090177, AC090181, AC051643, AC066609, AC090177, AC090181
S/G/Y/R/B/O NT_024654AC090181745698211          
S/G/Y/R/B/O NT_024654AC090177745699081          
S/G/Y/R/B/O NT_024654AC051643756105192RH8328  152691.00  2AC066609, AC090177, AC090181, AC051643, AC066609, AC090177, AC090181
S/G/Y/R/B/O NT_024654AC051643756105222RH1742915269.56    2AC066609, AC090177, AC090181, AC051643, AC066609, AC090177, AC090181
S/G/Y/R/B/O NT_024654AC090607747635251RH2638215269.53    1AC068554, AC068554, AC090607
S/G/Y/R/B/O NT_024654AC090607747645371RH5424415269.42  15289.601AC068554, AC068554, AC090607
S/G/Y/R/B/O NT_024654AC090607747647561RH1013715270.86    1 AC090607
S/G/Y/R/B/O NT_024654AC090607747647991RH1069915269.45    1 AC090607
S/G/Y/R/B/O NT_024654AC090607747801051RH4480215273.61    1AC068554, AC068554, AC090607
S/G/Y/R/B/O NT_024654AC068554746750281          
S/G/Y/R/B/O NT_024654AC090813747915551          
S/G/Y/R/B/O NT_024654AC011270748307893RH5434415271.82  15296.901AC090607, AC090813, AC011270, AC090607, AC090813
S/G/Y/R/B/O NT_024654AC011270748308413RH5420215269.42152817.0015289.601AC090607, AC090813, AC011270, AC090607, AC090813
S/G/Y/R/B/O NT_024654AC011270748308573RH7672115271.82    1AC090607, AC090813, AC011270, AC090607, AC090813
S/G/Y/R/B/O NT_024654AC011270748939223RH7799419291.07    2AC010326, AC010645, AC010326, AC010645, AL683889
S/G/Y/R/B/O NT_024654AC027228749521072RH6662415273.72    1 AC027228
S/G/Y/R/B/O NT_024654AC027228749810382RH5400515272.77152808.0015293.701 AC027228
S/G/Y/R/B/O NT_024654AC027228749817852RH3956615273.09    1 AC027228
S/G/Y/R/B/O NT_024654AC027228749824142RH4497115275.88    1 AC027228
S/G/Y/R/B/O NT_024654AC027228749824492RH6758415274.04    1 AC027228
S/G/Y/R/B/O NT_024654AC027228749830812RH5415515274.74  15293.601 AC027228
S/G/Y/R/B/O NT_024654AC027228749831222RH7780515275.70    1 AC027228
S/G/Y/R/B/O NT_024654AC027228749839212RH38038  152805.00  1 AC027228
S/G/Y/R/B/O NT_024654AC027228769922172RH5407315274.21  15292.301 AC027228
S/G/Y/R/B/O NT_024654AC027228769922692RH992215273.09    1 AC027228
S/G/Y/R/B/O NT_024654AC027228769954172RH4787215273.83    1 AC027228
S/G/Y/R/B/O NT_024654AC087465750062891RH2502015269.95    2AC016693, AC107883, AC016693, AC087465, AC107883
S/G/Y/R/B/O NT_024654AC087465751219041RH5403315270.26  15298.001AC016693, AC060773, AC016693, AC060773, AC087465
S/G/Y/R/B/O NT_024654AC016693750593911          
S/G/Y/R/B/O NT_024654AC060773751325062RH10409515269.95    1AC016693, AC087465, AC016693, AC060773, AC087465
S/G/Y/R/B/O NT_024654AC090984753636863WI-5695    15279.301AC046168, AC025242, AC046168, AC090984


  NT_024654 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_024654AC090984753829993RH5440715271.86  15280.901AC046168, AC025242, AC046168, AC090984
S/G/Y/R/B/O NT_024654AC046168755110082RH5425315272.87  15284.301AC110607, AC046168, AC110607
S/G/Y/R/B/O NT_024654AC046168755116432RH5430815272.40  15285.301AC110607, AC046168, AC110607
S/G/Y/R/B/O NT_024654AC016343757113492RH5431215271.01  15280.601AC051643, AC016343, AC051643, AC090507
S/G/Y/R/B/O NT_024654AC016343757113832RH5410915268.71  15301.501AC051643, AC051643, AC090507
S/G/Y/R/B/O NT_024654AC015798758950692WI-4310    15279.901 AC015798, AC023456
S/G/Y/R/B/O NT_024654AC090751759874283RH1500015265.55    2AC015798, AC023477, AC026163, AC066591, AC015798, AC023477, AC026163, AC066591, AC087844, AC090182, AC090473, AC090751
S/G/Y/R/B/O NT_024654AC090751759874283D15S114    15247.602AC015798, AC023477, AC026163, AC066591, AC015798, AC023477, AC026163, AC066591, AC087844, AC090182, AC090473, AC090751
S/G/Y/R/B/O NT_024654AC090751759874283RH255  152679.00  2AC015798, AC023477, AC026163, AC066591, AC015798, AC023477, AC026163, AC066591, AC087844, AC090182, AC090473, AC090751
S/G/Y/R/B/O NT_024654AC090751760871483RH9397615265.55    2AC023477, AC026163, AC066591, AC069527, AC011812, AC023477, AC026163, AC066591, AC069527, AC090182, AC090473, AC090540, AC090751
S/G/Y/R/B/O NT_024654AC090179761832663          
S/G/Y/R/B/O NT_024654AC027243761926021RH33828  152518.00  2AC024058, AC024059, AC090179, AC024058, AC024059, AC027243, AC090179
S/G/Y/R/B/O NT_024654AC027243761928221RH9134015270.05    2AC024059, AC090179, AC024059, AC027243, AC090179
S/G/Y/R/B/O NT_024654AC027243762119401RH5416415265.55  15282.802AC022003, AC024058, AC024059, AC068322, AC090179, AC090268, AC022003, AC024058, AC024059, AC027243, AC068322, AC090179, AC090268
S/G/Y/R/B/O NT_024654AC027243762119471RH1722215265.55    2AC022003, AC024058, AC024059, AC068322, AC090179, AC090268, AC022003, AC024058, AC024059, AC027243, AC068322, AC090179, AC090268
S/G/Y/R/B/O NT_024654AC027243762245681RH9285115265.65    2AC022003, AC024059, AC068322, AC090179, AC090268, AC022003, AC024059, AC027243, AC068322, AC090179, AC090268
S/G/Y/R/B/O NT_024654AC027243763350811WI-3857    15253.701AC068322, AC090268, AC027243, AC068322, AC090268
S/G/Y/R/B/O NT_024654AC027243763459371RH3947715263.73    1AC068322, AC090268, AC027243, AC068322, AC090268
S/G/Y/R/B/O NT_024654AC027243763504411WI-3509    15281.201AC090268, AC027243, AC090268
S/G/Y/R/B/O NT_024654AC027243763592271RH7583215268.81    1AC068322, AC090268, AC091100, AC027243, AC068322, AC090268, AC091100
S/G/Y/R/B/O NT_024654AC090268763187761          
S/G/Y/R/B/O NT_024654AC068322763364931          
S/G/Y/R/B/O NT_024654AC091100763628041          
S/G/Y/R/B/O NT_024654AC087464764488951          
S/G/Y/R/B/O NT_024654AC026033764955541          
S/G/Y/R/B/O NT_024654AC026180764962691          
S/G/Y/R/B/O NT_024654AC087456765118632          
S/G/Y/R/B/O NT_024654AC027104766278552RH5431715258.71  15254.301AC026180, AC087456, AC026180, AC027104, AC087456
S/G/Y/R/B/O NT_024654AC027104766368942RH9927115258.61    1AC026180, AC087456, AC026180, AC027104, AC068838, AC087456
S/G/Y/R/B/O NT_024654AC027104766405232RH4566015258.81    1AC026180, AC087456, AC026180, AC027104, AC068838, AC087456
S/G/Y/R/B/O NT_024654AC027104766688652RH10320515254.56    1AC026180, AC087456, AC026180, AC027104, AC068838, AC087456
S/G/Y/R/B/O NT_024654AC027104766696422RH3951215258.61    1 AC027104, AC068838
S/G/Y/R/B/O NT_024654AC019294766998523          
S/G/Y/R/B/O NT_024654 - RH10392615279.67    1AC016705, AC016705
S/G/Y/R/B/O NT_024654 - CHLC.GCT7C09    15267.401AC090477, AC090477
S/G/Y/R/B/O NT_024654 - RH1707015275.78    1AC012337, AC087761, AC010074, AC012337, AC087761, AL109671
S/G/Y/R/B/O NT_024654 - RH3946015272.72    0  
S/G/Y/R/B/O NT_024654 - RH3951115273.19    0AC103975, AC103975
S/G/Y/R/B/O NT_024654 - RH3954915276.01    1AC012337, AC087761, AC010074, AC012337, AC087761
S/G/Y/R/B/O NT_024654 - RH5406515270.79  15283.800  
S/G/Y/R/B/O NT_024654 - RH6663915272.03    0  
S/G/Y/R/B/O NT_024654 - WI-14768    15302.701AC103858, AC109809, AC103858, AC109809
S/G/Y/R/B/O NT_024654 - RH6793615260.43    3AC020779, AC021500, AC084227, AC105218, AC020779, AC021500, AC084227, AC091121, AC105218, AF276756, X56494
S/G/Y/R/B/O NT_024654 - SGC31169    15304.201AC027808, AC027808
S/G/Y/R/B/O NT_024654 - RH6935815261.24    0 AF227218
S/G/Y/R/B/O NT_024654 - D15S206    15305.901AC025219, AC103976, AC025219, AC103976
S/G/Y/R/B/O NT_024654 - RH7011115273.40    1 AC026817
S/G/Y/R/B/O NT_024654 - WI-1943    15305.901AC027808, AC027808
S/G/Y/R/B/O NT_024654 - RH7647715260.63    0  
S/G/Y/R/B/O NT_024654 - WI-14644    15305.901AC023302, AC027808, AC023302, AC027808


  NT_024654 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_024654 - RH7663115281.99    1AC012337, AC087761, AC010074, AC012337, AC087761
S/G/Y/R/B/O NT_024654 - WI-11334    15306.401AC103858, AC103858, AF077011
S/G/Y/R/B/O NT_024654 - RH7777915275.78    1AC012337, AC087761, AC010074, AC012337, AC087761
S/G/Y/R/B/O NT_024654 - RH8090515272.72    0 More than 15
S/G/Y/R/B/O NT_024654 - RH9841815260.94    1AC087699, AC010076, AC087699