Chromosome 9 - Clone Overlaps

Chromosome 9 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_008413	NT_035002	NT_037733	NT_037734	NT_023974	NT_033210	NT_035004	NT_037735
NT_035005	NT_035007	NT_037736	NT_037737	NT_035008	NT_037738	NT_033214	NT_033207
NT_037739	NT_033218	NT_033213	NT_037740	NT_037741	NT_033211	NT_033219	NT_033217
NT_037742	NT_029359	NT_033208	NT_033212	NT_035011	NT_031832	NT_033205	NT_035010
NT_030753	NT_037743	NT_033209	NT_008580	NT_023935	NT_023932	NT_008476	NT_008470
NT_037744	NT_017568	NT_008338	NT_035014	NT_037745	NT_008554	NT_030058	NT_019501
NT_024000	NT_035015	NT_037746	NT_023929

NT_008476

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_008476	AL451122	84406816	3	chr9	NT_008476	AL161629	84445094	3	0	0	1839	1839
S/G/Y/R/B/O	NT_008476	AL451122	84406816	3			AC015889	83994622		31410	0	6618	38028
S/G/Y/R/B/O	NT_008476	AL161629	84445094	3	chr9	NT_008476	AL353649	84603435	3	0	0	100	100
S/G/Y/R/B/O	NT_008476	AL161629	84445094	3			AC009900	84445094		19754	0	18382	38136
S/G/Y/R/B/O	NT_008476	AL161629	84445094	3			AC015889	84445094		80018	2802	50012	132832
S/G/Y/R/B/O	NT_008476	AL353649	84603435	3	chr9	NT_008476	AL389888	84668126	3	0	0	100	100
S/G/Y/R/B/O	NT_008476	AL353649	84603435	3			AC009900	84406816		64701	0	0	64701
S/G/Y/R/B/O	NT_008476	AL389888	84668126	3	chr9	NT_008476	AL161632	84870900	3	0	0	100	100
S/G/Y/R/B/O	NT_008476	AL389888	84668126	3			AC009900	84668126		43775	0	14185	57960
S/G/Y/R/B/O	NT_008476	AL161632	84870900	3	chr9	NT_008476	AL354853	84874199	3	0	0	100	100
S/G/Y/R/B/O	NT_008476	AL354853	84874199	3	chr9	NT_008476	AL353619	85050521	3	0	1996	0	1996
S/G/Y/R/B/O	NT_008476	AL354853	84874199	3			AC009787	84668126		75022	2738	48491	126251
S/G/Y/R/B/O	NT_008476	AL354853	84874199	3			AC021583	84668126		45628	0	0	45628
S/G/Y/R/B/O	NT_008476	AL353619	85050521	3	chr9	NT_008476	AL446024	85191820	3	0	1999	0	1999
S/G/Y/R/B/O	NT_008476	AL353619	85050521	3			AC021582	85050521		119242	0	0	119242
S/G/Y/R/B/O	NT_008476	AL446024	85191820	3	chr9	NT_008476	AL354862	85243223	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008476	AL446024	85191820	3			AC010612	85191820		30703	0	0	30703
S/G/Y/R/B/O	NT_008476	AL446024	85191820	3			AC021581	85191820		35175	0	0	35175
S/G/Y/R/B/O	NT_008476	AL446024	85191820	3			AC021582	85191820		53403	0	0	53403
S/G/Y/R/B/O	NT_008476	AL354862	85243223	3	chr9	NT_008476	AL162585	85393601	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL354862	85243223	3			AC010612	85243223		111056	0	0	111056
S/G/Y/R/B/O	NT_008476	AL354862	85243223	3			AC021581	85243223		148346	0	0	148346
S/G/Y/R/B/O	NT_008476	AL162585	85393601	3	chr9	NT_008476	AL355607	85437289	3	0	2000	0	2000
S/G/Y/R/B/O	NT_008476	AL355607	85437289	3	chr9	NT_008476	AL158071	85548597	3	0	2000	0	2000
S/G/Y/R/B/O	NT_008476	AL355607	85437289	3			AC021580	85437289		113111	0	0	113111
S/G/Y/R/B/O	NT_008476	AL158071	85548597	3	chr9	NT_008476	AL513353	85728220	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008476	AL158071	85548597	3			AC021580	85393601		47499	0	0	47499
S/G/Y/R/B/O	NT_008476	AL513353	85728220	3	chr9	NT_008476	AL353645	85831445	3	0	1927	0	1927
S/G/Y/R/B/O	NT_008476	AL353645	85831445	3	chr9	NT_008476	AL353764	85860908	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL353764	85860908	3	chr9	NT_008476	AL159999	86029806	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL353764	85860908	3			AC016177	85728220		72479	1969	17489	91937
S/G/Y/R/B/O	NT_008476	AL353764	85860908	3			AL359391	85728220		14379	0	0	14379
S/G/Y/R/B/O	NT_008476	AL159999	86029806	3	chr9	NT_008476	AL591214	86129665	3	0	1948	0	1948
S/G/Y/R/B/O	NT_008476	AL159999	86029806	3	chr9	NT_008476	AL928802	86194624	1	35908	0	6661	42569
S/G/Y/R/B/O	NT_008476	AL159999	86029806	3			AL359391	85728220		13642	0	25124	38766
S/G/Y/R/B/O	NT_008476	AL591214	86129665	3	chr9	NT_008476	AL928802	86194624	1	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL591214	86129665	3			AL359391	86029806		17120	2780	12956	32856
S/G/Y/R/B/O	NT_008476	AL928802	86194624	1	chr9	NT_008476	AL583841	86217418	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL928802	86194624	1	chr9	NT_008476	AL159999	86029806	3	35908	0	6661	42569
S/G/Y/R/B/O	NT_008476	AL928802	86194624	1			AL359391	86029806		24608	2780	22599	49987
S/G/Y/R/B/O	NT_008476	AL583841	86217418	3	chr9	NT_008476	AL391219	86410217	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008476	AL583841	86217418	3			AC074086	86029806		39060	10716	42525	92301
S/G/Y/R/B/O	NT_008476	AL391219	86410217	3	chr9	NT_008476	AL354751	86553117	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL391219	86410217	3			AC074086	86410217		10252	9846	20713	40811
S/G/Y/R/B/O	NT_008476	AL354751	86553117	3	chr9	NT_008476	AL136097	86655345	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL136097	86655345	3	chr9	NT_008476	AL137848	86848733	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL136097	86655345	3			AC016844	86217418		67821	2574	9894	80289
S/G/Y/R/B/O	NT_008476	AL136097	86655345	3			AL354924	86217418		143579	0	0	143579
S/G/Y/R/B/O	NT_008476	AL137848	86848733	3	chr9	NT_008476	AL157827	86999074	3	29226	0	0	29226
S/G/Y/R/B/O	NT_008476	AL137848	86848733	3			AC025394	86217418		41704	0	1440	43144
S/G/Y/R/B/O	NT_008476	AL137848	86848733	3			AL354924	86999074		51040	4912	0	55952
S/G/Y/R/B/O	NT_008476	AL157827	86999074	3	chr9	NT_008476	AL137074	87137582	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL157827	86999074	3			AC025394	86999074		73790	6128	5267	85185
S/G/Y/R/B/O	NT_008476	AL137074	87137582	3	chr9	NT_008476	AL136981	87220521	3	0	0	100	100
S/G/Y/R/B/O	NT_008476	AL136981	87220521	3	chr9	NT_008476	AL389924	87402701	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL389924	87402701	3	chr9	NT_008476	AL451065	87473103	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL451065	87473103	3	chr9	NT_008476	AL390760	87634792	3	45730	0	0	45730
S/G/Y/R/B/O	NT_008476	AL390760	87634792	3	chr9	NT_008476	AL354991	87764859	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL354991	87764859	3	chr9	NT_008476	AL583839	87799803	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008476	AL583839	87799803	3	chr9	NT_008476	AL353629	87938521	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008476	AL583839	87799803	3			AC022082	87799803		11642	0	2595	14237
S/G/Y/R/B/O	NT_008476	AL353629	87938521	3	chr9	NT_008476	AL359181	88107366	3	0	1995	0	1995
S/G/Y/R/B/O	NT_008476	AL359181	88107366	3	chr9	NT_008476	AL442224	88270781	3	0	0	1074	1074
S/G/Y/R/B/O	NT_008476	AL442224	88270781	3	chr9	NT_008476	AL357073	88371738	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL357073	88371738	3	chr9	NT_008476	AL360020	88473405	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL360020	88473405	3	chr9	NT_008476	AL158152	88630115	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL360020	88473405	3			AC007924	88107366		24774	15584	1368	41726
S/G/Y/R/B/O	NT_008476	AL360020	88473405	3			AC083821	88107366		23743	0	1253	24996
S/G/Y/R/B/O	NT_008476	AL360020	88473405	3			AC087784	88107366		52538	0	489	53027
S/G/Y/R/B/O	NT_008476	AL360020	88473405	3			AL353226	88107366		64220	0	0	64220
S/G/Y/R/B/O	NT_008476	AL158152	88630115	3	chr9	NT_008476	AL691447	88739263	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL158152	88630115	3			AC007924	88107366		39697	13031	19296	72024
S/G/Y/R/B/O	NT_008476	AL158152	88630115	3			AC083821	88107366		21242	13500	10179	44921
S/G/Y/R/B/O	NT_008476	AL158152	88630115	3			AC087784	88107366		20792	10239	2605	33636
S/G/Y/R/B/O	NT_008476	AL691447	88739263	3	chr9	NT_008476	AL772369	88829044	3	70044	0	0	70044
S/G/Y/R/B/O	NT_008476	AL691447	88739263	3			AL772267	91308179		114070	0	0	114070
S/G/Y/R/B/O	NT_008476	AL772369	88829044	3	chr9	NT_008476	AL358232	88900635	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL772369	88829044	3			AL772267	88739263		69590	0	0	69590
S/G/Y/R/B/O	NT_008476	AL358232	88900635	3	chr9	NT_008476	AL161728	89012974	3	0	0	1828	1828
S/G/Y/R/B/O	NT_008476	AL358232	88900635	3			AC068317	88739263		24764	3189	4031	31984
S/G/Y/R/B/O	NT_008476	AL161728	89012974	3	chr9	NT_008476	AL157936	89181504	3	0	0	1636	1636
S/G/Y/R/B/O	NT_008476	AL161728	89012974	3			AC068317	89012974		31187	0	8700	39887
S/G/Y/R/B/O	NT_008476	AL157936	89181504	3	chr9	NT_008476	AL807757	89304063	3	0	1998	0	1998
S/G/Y/R/B/O	NT_008476	AL157936	89181504	3			AC015671	88900635		38136	6564	2126	46826
S/G/Y/R/B/O	NT_008476	AL807757	89304063	3	chr9	NT_008476	AL353768	89393342	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008476	AL807757	89304063	3			AC015671	89304063		33821	4056	10230	48107
S/G/Y/R/B/O	NT_008476	AL353768	89393342	3	chr9	NT_008476	AL354893	89561404	3	2000	0	0	2000
S/G/Y/R/B/O	NT_008476	AL353768	89393342	3			AC015671	89393342		18175	0	0	18175
S/G/Y/R/B/O	NT_008476	AL353768	89393342	3			AC022185	89393342		148011	2690	1080	151781
S/G/Y/R/B/O	NT_008476	AL354893	89561404	3	chr9	NT_008476	AL157384	89663384	3	0	0	100	100
S/G/Y/R/B/O	NT_008476	AL354893	89561404	3	chr9	NT_008476	AC016667	89863446	1	48014	1624	672	50310
S/G/Y/R/B/O	NT_008476	AL354893	89561404	3			AC027180	89863446		21435	0	6528	27963
S/G/Y/R/B/O	NT_008476	AL157384	89663384	3	chr9	NT_008476	AL446023	89821427	3	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL157384	89663384	3	chr9	NT_008476	AC016667	89863446	1	63258	0	0	63258
S/G/Y/R/B/O	NT_008476	AL157384	89663384	3			AC027096	89863446		14953	0	0	14953
S/G/Y/R/B/O	NT_008476	AL157384	89663384	3			AC027180	89863446		117251	2734	7778	127763
S/G/Y/R/B/O	NT_008476	AL446023	89821427	3	chr9	NT_008476	AC016667	89863446	1	0	0	0	0
S/G/Y/R/B/O	NT_008476	AL446023	89821427	3			AC027096	89561404		27598	2368	1155	31121
S/G/Y/R/B/O	NT_008476	AC016667	89863446	1
S/G/Y/R/B/O	NT_008476	AC016667	89863446	1	chr9	NT_008476	AL157384	89663384	3	63258	0	0	63258
S/G/Y/R/B/O	NT_008476	AC016667	89863446	1	chr9	NT_008476	AL354893	89561404	3	48014	1624	672	50310
S/G/Y/R/B/O	NT_008476	AC016667	89863446	1			AC027096	89561404		18016	0	2326	20342
S/G/Y/R/B/O	NT_008476	AC016667	89863446	1			AC027180	89561404		80454	10965	13134	104553