Chromosome 9 - Clone Overlaps

Chromosome 9 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_008413	NT_035002	NT_037733	NT_037734	NT_023974	NT_033210	NT_035004	NT_037735
NT_035005	NT_035007	NT_037736	NT_037737	NT_035008	NT_037738	NT_033214	NT_033207
NT_037739	NT_033218	NT_033213	NT_037740	NT_037741	NT_033211	NT_033219	NT_033217
NT_037742	NT_029359	NT_033208	NT_033212	NT_035011	NT_031832	NT_033205	NT_035010
NT_030753	NT_037743	NT_033209	NT_008580	NT_023935	NT_023932	NT_008476	NT_008470
NT_037744	NT_017568	NT_008338	NT_035014	NT_037745	NT_008554	NT_030058	NT_019501
NT_024000	NT_035015	NT_037746	NT_023929

NT_037734

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_037734	AL445624	20889265	1	chr9	NT_037734	AL392163	20995612	3	73348	0	0	73348
S/G/Y/R/B/O	NT_037734	AL392163	20995612	3	chr9	NT_037734	AL662879	21156715	3	38409	0	0	38409
S/G/Y/R/B/O	NT_037734	AL662879	21156715	3	chr9	NT_037734	AL390882	21277528	3	69997	0	0	69997
S/G/Y/R/B/O	NT_037734	AL390882	21277528	3	chr9	NT_037734	AL512606	21369594	3	0	1977	0	1977
S/G/Y/R/B/O	NT_037734	AL512606	21369594	3	chr9	NT_037734	AL162420	21423901	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL162420	21423901	3	chr9	NT_037734	AL353732	21546392	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL353732	21546392	3	chr9	NT_037734	AL137022	21717603	3	0	0	100	100
S/G/Y/R/B/O	NT_037734	AL137022	21717603	3	chr9	NT_037734	AL355679	21887357	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037734	AL137022	21717603	3			AC013699	21717603		42060	0	0	42060
S/G/Y/R/B/O	NT_037734	AL137022	21717603	3			AC018973	21717603		59917	7098	20519	87534
S/G/Y/R/B/O	NT_037734	AL137022	21717603	3			AC022041	21717603		111121	1942	6005	119068
S/G/Y/R/B/O	NT_037734	AL355679	21887357	3	chr9	NT_037734	AL359922	21945732	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037734	AL355679	21887357	3			AC013699	21887357		16429	1691	4161	22281
S/G/Y/R/B/O	NT_037734	AL355679	21887357	3			AC018973	21887357		15760	0	1327	17087
S/G/Y/R/B/O	NT_037734	AL355679	21887357	3			AC022041	21887357		22800	0	0	22800
S/G/Y/R/B/O	NT_037734	AL359922	21945732	3	chr9	NT_037734	AL449423	22112388	3	0	1913	0	1913
S/G/Y/R/B/O	NT_037734	AL359922	21945732	3			AC013699	21945732		68090	0	0	68090
S/G/Y/R/B/O	NT_037734	AL449423	22112388	3	chr9	NT_037734	AL354709	22211543	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037734	AL449423	22112388	3			AC000047	22112388		31897	0	0	31897
S/G/Y/R/B/O	NT_037734	AL449423	22112388	3			AC000049	22112388		20453	0	0	20453
S/G/Y/R/B/O	NT_037734	AL354709	22211543	3	chr9	NT_037734	AL157937	22367076	3	0	0	100	100
S/G/Y/R/B/O	NT_037734	AL354709	22211543	3			AC000049	21945732		25666	0	0	25666
S/G/Y/R/B/O	NT_037734	AL157937	22367076	3	chr9	NT_037734	AL161730	22520759	3	0	0	100	100
S/G/Y/R/B/O	NT_037734	AL161730	22520759	3	chr9	NT_037734	AL583802	22690725	3	0	0	100	100
S/G/Y/R/B/O	NT_037734	AL583802	22690725	3	chr9	NT_037734	AL603704	22790851	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL603704	22790851	3	chr9	NT_037734	AC017067	22830088	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL603704	22790851	3			AL356116	22520759		14327	0	0	14327
S/G/Y/R/B/O	NT_037734	AC017067	22830088	3	chr9	NT_037734	AL645734	23019461	3	0	0	1577	1577
S/G/Y/R/B/O	NT_037734	AC017067	22830088	3			AL356116	22520759		57620	5351	21662	84633
S/G/Y/R/B/O	NT_037734	AL645734	23019461	3	chr9	NT_037734	AL391117	23094342	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL391117	23094342	3	chr9	NT_037734	AL391667	23252282	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL391117	23094342	3			AC021947	22830088		68481	2230	0	70711
S/G/Y/R/B/O	NT_037734	AL391667	23252282	3	chr9	NT_037734	AL357614	23362624	1	0	1005	0	1005
S/G/Y/R/B/O	NT_037734	AL357614	23362624	1	chr9	NT_037734	AL163528	23392158	1	52963	0	1472	54435
S/G/Y/R/B/O	NT_037734	AL357614	23362624	1			AL357615	23392158		29234	0	0	29234
S/G/Y/R/B/O	NT_037734	AL163528	23392158	1	chr9	NT_037734	AL442637	23607737	3	13122	0	863	13985
S/G/Y/R/B/O	NT_037734	AL163528	23392158	1			AC011568	23252282		21533	2956	2348	26837
S/G/Y/R/B/O	NT_037734	AL163528	23392158	1			AC016263	23252282		12260	413	871	13544
S/G/Y/R/B/O	NT_037734	AL442637	23607737	3	chr9	NT_037734	AL445623	23788651	3	43300	0	0	43300
S/G/Y/R/B/O	NT_037734	AL442637	23607737	3			AC011568	23607737		58616	2319	9755	70690
S/G/Y/R/B/O	NT_037734	AL442637	23607737	3			AC016263	23607737		106492	2458	1752	110702
S/G/Y/R/B/O	NT_037734	AL445623	23788651	3	chr9	NT_037734	AL161628	23943988	3	73044	0	0	73044
S/G/Y/R/B/O	NT_037734	AL445623	23788651	3			AC011060	23788651		73944	5240	0	79184
S/G/Y/R/B/O	NT_037734	AL445623	23788651	3			AC011568	23788651		54529	0	11309	65838
S/G/Y/R/B/O	NT_037734	AL445623	23788651	3			AC016263	23788651		107614	3332	0	110946
S/G/Y/R/B/O	NT_037734	AL161628	23943988	3	chr9	NT_037734	AL365204	24054426	3	0	0	100	100
S/G/Y/R/B/O	NT_037734	AL161628	23943988	3			AC011060	23607737		101832	5239	41725	148796
S/G/Y/R/B/O	NT_037734	AL161628	23943988	3			AC027172	23607737		71278	1737	7832	80847
S/G/Y/R/B/O	NT_037734	AL365204	24054426	3	chr9	NT_037734	AL513317	24183517	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL365204	24054426	3			AC018586	23788651		46363	0	0	46363
S/G/Y/R/B/O	NT_037734	AL365204	24054426	3			AC027172	23788651		42430	4271	0	46701
S/G/Y/R/B/O	NT_037734	AL513317	24183517	3	chr9	NT_037734	AL354777	24323885	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL513317	24183517	3			AC018586	23943988		22630	0	0	22630
S/G/Y/R/B/O	NT_037734	AL354777	24323885	3	chr9	NT_037734	AL161724	24474633	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL354777	24323885	3			AP001391	23943988		32833	0	871	33704
S/G/Y/R/B/O	NT_037734	AL161724	24474633	3	chr9	NT_037734	AL445241	24605300	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037734	AL161724	24474633	3			AC010384	23943988		112576	0	0	112576
S/G/Y/R/B/O	NT_037734	AL161724	24474633	3			AC010471	23943988		112576	0	0	112576
S/G/Y/R/B/O	NT_037734	AL161724	24474633	3			AP001391	24605300		14312	3744	15972	34028
S/G/Y/R/B/O	NT_037734	AL445241	24605300	3	chr9	NT_037734	AL441928	24648250	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037734	AL441928	24648250	3	chr9	NT_037734	AL162232	24718843	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037734	AL162232	24718843	3	chr9	NT_037734	AL353811	24781084	3	0	1999	0	1999
S/G/Y/R/B/O	NT_037734	AL353811	24781084	3	chr9	NT_037734	AL513333	24969735	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL513333	24969735	3	chr9	NT_037734	AL157830	25002365	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL157830	25002365	3	chr9	NT_037734	AL355975	25170886	3	0	2000	0	2000
S/G/Y/R/B/O	NT_037734	AL157830	25002365	3			AC021692	24718843		16966	1780	21736	40482
S/G/Y/R/B/O	NT_037734	AL355975	25170886	3	chr9	NT_037734	AL627260	25300591	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037734	AL355975	25170886	3			AC021692	25170886		76265	1949	3850	82064
S/G/Y/R/B/O	NT_037734	AL355975	25170886	3			AL139235	25170886		32751	0	0	32751
S/G/Y/R/B/O	NT_037734	AL627260	25300591	3	chr9	NT_037734	AL353772	25409406	3	0	0	1927	1927
S/G/Y/R/B/O	NT_037734	AL627260	25300591	3			AL139235	25300591		110188	0	0	110188
S/G/Y/R/B/O	NT_037734	AL353772	25409406	3	chr9	NT_037734	AL158074	25523476	3	0	0	100	100
S/G/Y/R/B/O	NT_037734	AL353772	25409406	3			AC015737	25170886		65876	0	0	65876
S/G/Y/R/B/O	NT_037734	AL353772	25409406	3			AC018724	25170886		41376	0	0	41376
S/G/Y/R/B/O	NT_037734	AL353772	25409406	3			AL139235	25170886		49420	0	0	49420
S/G/Y/R/B/O	NT_037734	AL158074	25523476	3	chr9	NT_037734	AL353730	25657066	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL158074	25523476	3			AC015737	25300591		79601	0	0	79601
S/G/Y/R/B/O	NT_037734	AL158074	25523476	3			AC018724	25300591		57957	4390	6404	68751
S/G/Y/R/B/O	NT_037734	AL353730	25657066	3	chr9	NT_037734	AL590322	25804776	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037734	AL590322	25804776	3	chr9	NT_037734	AL391475	25923362	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037734	AL391475	25923362	3	chr9	NT_037734	AL391649	26084420	3	0	0	100	100
S/G/Y/R/B/O	NT_037734	AL391475	25923362	3			AC003953	25923362		75780	0	0	75780
S/G/Y/R/B/O	NT_037734	AL391475	25923362	3			AC023574	25923362		19250	0	0	19250
S/G/Y/R/B/O	NT_037734	AL391649	26084420	3	chr9	NT_037734	AL353753	26141649	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL353753	26141649	3	chr9	NT_037734	AL356791	26320514	3	0	0	100	100
S/G/Y/R/B/O	NT_037734	AL353753	26141649	3			AC023574	25923362		82062	0	0	82062
S/G/Y/R/B/O	NT_037734	AL356791	26320514	3	chr9	NT_037734	AL592226	26421571	3	0	0	1829	1829
S/G/Y/R/B/O	NT_037734	AL592226	26421571	3	chr9	NT_037734	AL356156	26520910	3	0	1999	0	1999
S/G/Y/R/B/O	NT_037734	AL592226	26421571	3			AC022180	26421571		65848	0	8581	74429
S/G/Y/R/B/O	NT_037734	AL356156	26520910	3	chr9	NT_037734	AL590078	26649508	3	0	0	0	0
S/G/Y/R/B/O	NT_037734	AL356156	26520910	3			AC022180	26320514		77169	0	1689	78858
S/G/Y/R/B/O	NT_037734	AL590078	26649508	3	chr9	NT_037734	AL442639	26787073	3	39400	0	0	39400
S/G/Y/R/B/O	NT_037734	AL590078	26649508	3			AC022180	26421571		22429	961	0	23390
S/G/Y/R/B/O	NT_037734	AL442639	26787073	3	chr9	NT_037734	AL451137	26912972	3	56106	0	0	56106
S/G/Y/R/B/O	NT_037734	AL442639	26787073	3			AC073836	26787073		24857	0	0	24857
S/G/Y/R/B/O	NT_037734	AL451137	26912972	3	chr9	NT_037734	AL356133	27019702	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037734	AL451137	26912972	3			AC073836	26649508		131607	0	0	131607
S/G/Y/R/B/O	NT_037734	AL356133	27019702	3
S/G/Y/R/B/O	NT_037734	AL356133	27019702	3			AL355432	26787073		13912	0	0	13912