Chromosome 9 - Clone Overlaps

Chromosome 9 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_008413	NT_035002	NT_037733	NT_037734	NT_023974	NT_033210	NT_035004	NT_037735
NT_035005	NT_035007	NT_037736	NT_037737	NT_035008	NT_037738	NT_033214	NT_033207
NT_037739	NT_033218	NT_033213	NT_037740	NT_037741	NT_033211	NT_033219	NT_033217
NT_037742	NT_029359	NT_033208	NT_033212	NT_035011	NT_031832	NT_033205	NT_035010
NT_030753	NT_037743	NT_033209	NT_008580	NT_023935	NT_023932	NT_008476	NT_008470
NT_037744	NT_017568	NT_008338	NT_035014	NT_037745	NT_008554	NT_030058	NT_019501
NT_024000	NT_035015	NT_037746	NT_023929

NT_037744

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_037744	AL807761	101542720	3	chr9	NT_037744	AL445487	101623260	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL807761	101542720	3			AC068188	101233206		57754	5477	4261	67492
S/G/Y/R/B/O	NT_037744	AL807761	101542720	3			AC068376	101233206		30922	1883	0	32805
S/G/Y/R/B/O	NT_037744	AL445487	101623260	3	chr9	NT_037744	AL137852	101733291	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL445487	101623260	3			AC068188	101623260		22656	0	22128	44784
S/G/Y/R/B/O	NT_037744	AL445487	101623260	3			AC068376	101623260		98528	0	2965	101493
S/G/Y/R/B/O	NT_037744	AL137852	101733291	3	chr9	NT_037744	AL359552	101895700	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL359552	101895700	3	chr9	NT_037744	AL360218	101980170	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL360218	101980170	3	chr9	NT_037744	AL389915	102011882	3	0	2000	0	2000
S/G/Y/R/B/O	NT_037744	AL389915	102011882	3	chr9	NT_037744	AL162389	102209483	3	0	2000	0	2000
S/G/Y/R/B/O	NT_037744	AL389915	102011882	3			AC073037	102011882		69920	5671	223	75814
S/G/Y/R/B/O	NT_037744	AL162389	102209483	3	chr9	NT_037744	AL353137	102364500	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL162389	102209483	3			AC073037	101980170		88669	3545	3859	96073
S/G/Y/R/B/O	NT_037744	AL353137	102364500	3	chr9	NT_037744	AC068050	102471893	3	20561	0	0	20561
S/G/Y/R/B/O	NT_037744	AC068050	102471893	3	chr9	NT_037744	AL353742	102604051	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AC068050	102471893	3			AC011877	102209483		66464	0	0	66464
S/G/Y/R/B/O	NT_037744	AC068050	102471893	3			AL358432	102604051		92379	0	0	92379
S/G/Y/R/B/O	NT_037744	AL353742	102604051	3	chr9	NT_037744	AL137019	102759708	3	0	1997	0	1997
S/G/Y/R/B/O	NT_037744	AL353742	102604051	3			AC011877	102604051		99297	0	19072	118369
S/G/Y/R/B/O	NT_037744	AL137019	102759708	3	chr9	NT_037744	AL353766	102939250	3	0	1998	0	1998
S/G/Y/R/B/O	NT_037744	AL137019	102759708	3			AL137788	102759708		21627	868	3377	25872
S/G/Y/R/B/O	NT_037744	AL353766	102939250	3	chr9	NT_037744	AL669983	103120792	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL353766	102939250	3			AC025005	102939250		38720	3287	378	42385
S/G/Y/R/B/O	NT_037744	AL353766	102939250	3			AL137788	102759708		42848	8322	1187	52357
S/G/Y/R/B/O	NT_037744	AL669983	103120792	3	chr9	NT_037744	AL358779	103179517	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL669983	103120792	3			AC025005	103120792		50692	0	229	50921
S/G/Y/R/B/O	NT_037744	AL358779	103179517	3	chr9	NT_037744	AL359692	103324626	3	0	0	1628	1628
S/G/Y/R/B/O	NT_037744	AL358779	103179517	3			AC025005	103179517		17091	8090	0	25181
S/G/Y/R/B/O	NT_037744	AL359692	103324626	3	chr9	NT_037744	AL354797	103401002	3	0	1991	0	1991
S/G/Y/R/B/O	NT_037744	AL354797	103401002	3	chr9	NT_037744	AL669894	103587142	3	0	1998	0	1998
S/G/Y/R/B/O	NT_037744	AL354797	103401002	3			AC013783	103179517		137094	8275	732	146101
S/G/Y/R/B/O	NT_037744	AL669894	103587142	3	chr9	NT_037744	AL358815	103589136	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL358815	103589136	3	chr9	NT_037744	AL359963	103780003	3	0	2000	0	2000
S/G/Y/R/B/O	NT_037744	AL358815	103589136	3			AC013568	103589136		46235	0	0	46235
S/G/Y/R/B/O	NT_037744	AL358815	103589136	3			AC013783	103589136		22682	1960	1164	25806
S/G/Y/R/B/O	NT_037744	AL359963	103780003	3	chr9	NT_037744	AL450025	103912982	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL359963	103780003	3			AC013568	103587142		72786	2977	33377	109140
S/G/Y/R/B/O	NT_037744	AL450025	103912982	3	chr9	NT_037744	AL162733	103919585	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL162733	103919585	3	chr9	NT_037744	AL135789	104106952	3	0	1999	0	1999
S/G/Y/R/B/O	NT_037744	AL135789	104106952	3	chr9	NT_037744	AL158829	104238346	3	0	1997	0	1997
S/G/Y/R/B/O	NT_037744	AL158829	104238346	3	chr9	NT_037744	AL627225	104373069	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL158829	104238346	3			AL359978	104106952		48332	0	2993	51325
S/G/Y/R/B/O	NT_037744	AL627225	104373069	3	chr9	NT_037744	AL353806	104375063	3	0	1990	0	1990
S/G/Y/R/B/O	NT_037744	AL353806	104375063	3	chr9	NT_037744	AL158823	104484116	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL353806	104375063	3			AL359978	104484116		90270	0	431	90701
S/G/Y/R/B/O	NT_037744	AL158823	104484116	3	chr9	NT_037744	AL353598	104657674	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL158823	104484116	3			AL137012	104373069		100659	0	0	100659
S/G/Y/R/B/O	NT_037744	AL353598	104657674	3	chr9	NT_037744	AL158158	104732142	3	0	2000	0	2000
S/G/Y/R/B/O	NT_037744	AL158158	104732142	3	chr9	NT_037744	AL354982	104924977	3	0	1996	0	1996
S/G/Y/R/B/O	NT_037744	AL354982	104924977	3	chr9	NT_037744	AL592463	105042054	3	0	1997	0	1997
S/G/Y/R/B/O	NT_037744	AL592463	105042054	3	chr9	NT_037744	AL513328	105136833	3	0	1992	0	1992
S/G/Y/R/B/O	NT_037744	AL513328	105136833	3	chr9	NT_037744	AL157881	105261831	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL513328	105136833	3			AP000882	105042054		23415	0	0	23415
S/G/Y/R/B/O	NT_037744	AL157881	105261831	3	chr9	NT_037744	AL442064	105424457	3	79151	0	0	79151
S/G/Y/R/B/O	NT_037744	AL157881	105261831	3			AL590646	105136833		162047	0	0	162047
S/G/Y/R/B/O	NT_037744	AL157881	105261831	3			AP000882	105136833		64233	12167	21755	98155
S/G/Y/R/B/O	NT_037744	AL442064	105424457	3	chr9	NT_037744	AC007157	105515019	3	0	0	0	0
S/G/Y/R/B/O	NT_037744	AL442064	105424457	3			AL590646	105261831		169692	0	0	169692
S/G/Y/R/B/O	NT_037744	AL442064	105424457	3			AP000882	105261831		13977	4992	12401	31370
S/G/Y/R/B/O	NT_037744	AC007157	105515019	3	chr9	NT_037744	AL365231	105599504	3	4545	0	0	4545
S/G/Y/R/B/O	NT_037744	AC007157	105515019	3			AL590646	105599504		24105	0	0	24105
S/G/Y/R/B/O	NT_037744	AL365231	105599504	3	chr9	NT_037744	AL162414	105608219	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL162414	105608219	3	chr9	NT_037744	AL354661	105784808	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL162414	105608219	3			AC011653	105608219		43890	4850	10421	59161
S/G/Y/R/B/O	NT_037744	AL354661	105784808	3	chr9	NT_037744	AL159168	105922777	3	0	0	0	0
S/G/Y/R/B/O	NT_037744	AL354661	105784808	3			AC011653	105599504		12932	0	28450	41382
S/G/Y/R/B/O	NT_037744	AL159168	105922777	3	chr9	NT_037744	AL135787	106051687	3	0	0	0	0
S/G/Y/R/B/O	NT_037744	AL135787	106051687	3	chr9	NT_037744	AL356491	106213035	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL356491	106213035	3	chr9	NT_037744	AL354877	106271385	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL354877	106271385	3	chr9	NT_037744	AL442066	106385621	3	0	2000	0	2000
S/G/Y/R/B/O	NT_037744	AL354877	106271385	3			AC016990	106271385		64050	2534	40630	107214
S/G/Y/R/B/O	NT_037744	AL442066	106385621	3	chr9	NT_037744	AL138756	106473931	3	0	1984	0	1984
S/G/Y/R/B/O	NT_037744	AL442066	106385621	3			AC016990	106385621		58090	0	6105	64195
S/G/Y/R/B/O	NT_037744	AL138756	106473931	3	chr9	NT_037744	AL158824	106661099	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL138756	106473931	3			AC010824	106271385		92204	15490	23816	131510
S/G/Y/R/B/O	NT_037744	AL138756	106473931	3			AC073213	106271385		14075	9048	9113	32236
S/G/Y/R/B/O	NT_037744	AL158824	106661099	3	chr9	NT_037744	AL359073	106808344	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL158824	106661099	3			AC073213	106385621		62671	0	1203	63874
S/G/Y/R/B/O	NT_037744	AL359073	106808344	3	chr9	NT_037744	AL162732	106873094	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL162732	106873094	3	chr9	NT_037744	AL445187	107058347	3	0	0	0	0
S/G/Y/R/B/O	NT_037744	AL162732	106873094	3			AC016904	106873094		15932	0	5081	21013
S/G/Y/R/B/O	NT_037744	AL162732	106873094	3			AL390202	106808344		27135	0	21183	48318
S/G/Y/R/B/O	NT_037744	AL445187	107058347	3	chr9	NT_037744	AL390067	107134361	3	0	2000	0	2000
S/G/Y/R/B/O	NT_037744	AL445187	107058347	3			AC025899	106808344		18818	1458	0	20276
S/G/Y/R/B/O	NT_037744	AL445187	107058347	3			AC067868	106808344		58613	1542	2803	62958
S/G/Y/R/B/O	NT_037744	AL390067	107134361	3	chr9	NT_037744	AL360235	107246539	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL390067	107134361	3			AC025899	107134361		69686	9486	9973	89145
S/G/Y/R/B/O	NT_037744	AL390067	107134361	3			AC067868	107134361		56473	0	12746	69219
S/G/Y/R/B/O	NT_037744	AL360235	107246539	3	chr9	NT_037744	AL139041	107341896	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL360235	107246539	3			AC025899	107058347		24727	0	13238	37965
S/G/Y/R/B/O	NT_037744	AL139041	107341896	3	chr9	NT_037744	AL162588	107481555	3	0	0	0	0
S/G/Y/R/B/O	NT_037744	AL162588	107481555	3	chr9	NT_037744	AL449105	107558059	3	0	0	0	0
S/G/Y/R/B/O	NT_037744	AL449105	107558059	3	chr9	NT_037744	AL449305	107665125	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL449305	107665125	3	chr9	NT_037744	AL137066	107823729	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL137066	107823729	3	chr9	NT_037744	AL359455	107959447	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL359455	107959447	3	chr9	NT_037744	AL162727	108043210	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL162727	108043210	3	chr9	NT_037744	AL157702	108153309	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL162727	108043210	3			AC022644	108043210		39715	0	6910	46625
S/G/Y/R/B/O	NT_037744	AL157702	108153309	3	chr9	NT_037744	AL162393	108314199	3	0	0	0	0
S/G/Y/R/B/O	NT_037744	AL157702	108153309	3			AC022644	107959447		69474	16962	9487	95923
S/G/Y/R/B/O	NT_037744	AL162393	108314199	3	chr9	NT_037744	AL137850	108498401	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL137850	108498401	3	chr9	NT_037744	AL445543	108624143	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL137850	108498401	3			AC011161	108498401		69889	9097	0	78986
S/G/Y/R/B/O	NT_037744	AL445543	108624143	3	chr9	NT_037744	AL356796	108764370	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL445543	108624143	3			AC011161	108624143		71718	5783	11964	89465
S/G/Y/R/B/O	NT_037744	AL445543	108624143	3			AC024555	108624143		49628	1823	0	51451
S/G/Y/R/B/O	NT_037744	AL356796	108764370	3	chr9	NT_037744	AL138895	108889943	3	0	1998	0	1998
S/G/Y/R/B/O	NT_037744	AL356796	108764370	3			AC024555	108764370		112934	3245	3021	119200
S/G/Y/R/B/O	NT_037744	AL356796	108764370	3			AF336382	108764370		69667	0	1597	71264
S/G/Y/R/B/O	NT_037744	AL138895	108889943	3	chr9	NT_037744	AL160275	109020235	3	0	0	100	100
S/G/Y/R/B/O	NT_037744	AL138895	108889943	3			AF336382	108624143		102659	0	0	102659
S/G/Y/R/B/O	NT_037744	AL160275	109020235	3	chr9	NT_037744	AL390240	109209844	3	0	2000	0	2000
S/G/Y/R/B/O	NT_037744	AL160275	109020235	3			AL645562	109209844		70359	0	50304	120663
S/G/Y/R/B/O	NT_037744	AL390240	109209844	3	chr9	NT_037744	AL133412	109301720	3	2000	0	0	2000
S/G/Y/R/B/O	NT_037744	AL390240	109209844	3			AL645562	109020235		29963	0	56713	86676
S/G/Y/R/B/O	NT_037744	AL133412	109301720	3	chr9	NT_037744	AL162425	109458437	3	0	2000	0	2000
S/G/Y/R/B/O	NT_037744	AL162425	109458437	3	chr9	NT_037744	AL355601	109634165	3	0	1999	0	1999
S/G/Y/R/B/O	NT_037744	AL162425	109458437	3			AL353589	109301720		63431	0	0	63431
S/G/Y/R/B/O	NT_037744	AL355601	109634165	3	chr9	NT_037744	AL731824	109813270	3	0	0	0	0
S/G/Y/R/B/O	NT_037744	AL355601	109634165	3			AL353589	109458437		57563	2602	0	60165
S/G/Y/R/B/O	NT_037744	AL355601	109634165	3			AL353589	109458437		57563	2602	0	60165
S/G/Y/R/B/O	NT_037744	AL731824	109813270	3	chr9	NT_037744	AL714001	109857176	3	0	1961	0	1961
S/G/Y/R/B/O	NT_037744	AL714001	109857176	3	chr9	NT_037744	AL691420	109997100	3	0	1980	0	1980
S/G/Y/R/B/O	NT_037744	AL714001	109857176	3			AL731841	109813270		85234	0	6384	91618
S/G/Y/R/B/O	NT_037744	AL691420	109997100	3	chr9	NT_037744	AL731897	110170838	3	0	0	1622	1622
S/G/Y/R/B/O	NT_037744	AL731897	110170838	3	chr9	NT_037744	AL731813	110294034	3	22976	0	0	22976
S/G/Y/R/B/O	NT_037744	AL731813	110294034	3	chr9	NT_037744	AL732367	110359468	3	81552	0	0	81552
S/G/Y/R/B/O	NT_037744	AL731813	110294034	3			AC018530	110294034		23967	0	0	23967
S/G/Y/R/B/O	NT_037744	AL732367	110359468	3	chr9	NT_037744	AL691426	110480446	3	0	2000	0	2000
S/G/Y/R/B/O	NT_037744	AL732367	110359468	3			AC018530	110359468		63307	0	0	63307
S/G/Y/R/B/O	NT_037744	AL732367	110359468	3			AL731835	110294034		13137	0	0	13137
S/G/Y/R/B/O	NT_037744	AL691426	110480446	3
S/G/Y/R/B/O	NT_037744	AL691426	110480446	3			AC018530	110294034		44535	0	0	44535
S/G/Y/R/B/O	NT_037744	AL691426	110480446	3			AL731835	110294034		145534	0	0	145534