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  Chromosome 9 - YAC Map - Single Contig
 

Chromosome 9 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_035002 NT_023974 NT_033214 NT_030759 NT_030753
NT_033213 NT_035003 NT_033210 NT_035004 NT_008389 NT_035005 NT_035006 NT_035007
NT_035008 NT_033219 NT_033217 NT_035009 NT_029359 NT_033209 NT_033206 NT_033208
NT_035010 NT_031835 NT_033212 NT_031832 NT_035011 NT_033205 NT_033211 NT_033207
NT_008580 NT_023935 NT_028278 NT_023975 NT_023932 NT_024010 NT_035012 NT_008476
NT_035013 NT_033216 NT_008470 NT_017568 NT_029366 NT_008338 NT_035014 NT_017539
NT_008554 NT_030058 NT_019501 NT_033215 NT_024000 NT_035015 NT_023929


  NT_008413
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008413AL5919682932433      
S/G/Y/R/B/O NT_008413AL1588323671903      
S/G/Y/R/B/O NT_008413AL1617255559353CHLC.GCT3G0599.001 AL161725.13
S/G/Y/R/B/O NT_008413AL1617256832823D9S177993.001 AC025306.3, AL161725.13
S/G/Y/R/B/O NT_008413AL3920897138003      
S/G/Y/R/B/O NT_008413AL1369798634903D9S185898.001 AL136979.16
S/G/Y/R/B/O NT_008413AL13636511673183AFMA113WA594.001 AL136365.9
S/G/Y/R/B/O NT_008413AL35897611676363      
S/G/Y/R/B/O NT_008413AL59147412776343      
S/G/Y/R/B/O NT_008413AL35649812996063      
S/G/Y/R/B/O NT_008413AL35893414286273WI-262595.001 AL358934.19
S/G/Y/R/B/O NT_008413AL35369615139953      
S/G/Y/R/B/O NT_008413AL35805316956121      
S/G/Y/R/B/O NT_008413AL35628417744453GCT17C0696.001 AL136978.7
S/G/Y/R/B/O NT_008413AL35359019098863      
S/G/Y/R/B/O NT_008413AL59164420678133      
S/G/Y/R/B/O NT_008413AL35907621635603      
S/G/Y/R/B/O NT_008413AL13875523004193      
S/G/Y/R/B/O NT_008413AL35366724603573      
S/G/Y/R/B/O NT_008413AL35361426286233      
S/G/Y/R/B/O NT_008413AL45046727477783      
S/G/Y/R/B/O NT_008413AL35472328226393      
S/G/Y/R/B/O NT_008413AL58967529805723      
S/G/Y/R/B/O NT_008413AL35907730883553      
S/G/Y/R/B/O NT_008413AL13354932688613      
S/G/Y/R/B/O NT_008413AL35494134309983      
S/G/Y/R/B/O NT_008413AL60363135220273      
S/G/Y/R/B/O NT_008413AL36520235240213      
S/G/Y/R/B/O NT_008413AL35497736991853      
S/G/Y/R/B/O NT_008413AL35357738606323      
S/G/Y/R/B/O NT_008413AL13707139198163      
S/G/Y/R/B/O NT_008413AL15801241056273D9S288910.001 AC016453.4
S/G/Y/R/B/O NT_008413AL15801241914723D9S1873913.001 AC016453.4, AL158012.14
S/G/Y/R/B/O NT_008413AL35909542141803      
S/G/Y/R/B/O NT_008413AL13328342752343D9S178911.001 AL133283.9
S/G/Y/R/B/O NT_008413AL13328342875723D9S1813912.001 AL133283.9
S/G/Y/R/B/O NT_008413AL16241944204023D9S1792914.001 AL162419.34
S/G/Y/R/B/O NT_008413AL16241944737523AFM260YH9915.001 AL162419.34
S/G/Y/R/B/O NT_008413AL16241944818443FB2G7916.001 AL162419.34
S/G/Y/R/B/O NT_008413AL16258745717323      
S/G/Y/R/B/O NT_008413AL13623147395473WI-7925917.001 AC023479.2, AL136231.12
S/G/Y/R/B/O NT_008413AL13623147412723WI-9463921.001 AC023479.2, AL136231.12
S/G/Y/R/B/O NT_008413AL13623147523123WI-6770919.001 AC023479.2, AL136231.12
S/G/Y/R/B/O NT_008413AL13623147984063D9S1686920.001 AL136231.12
S/G/Y/R/B/O NT_008413AL13623148621183WI-6832918.001 AC023479.2, AL136231.12, AL353142.6
S/G/Y/R/B/O NT_008413AL35315148750723      
S/G/Y/R/B/O NT_008413AL15814749856453      
S/G/Y/R/B/O NT_008413AL51335051558313      
S/G/Y/R/B/O NT_008413AL16145051727993      
S/G/Y/R/B/O NT_008413AL13354753542253CHLC.GATA71C01923.001 AL133547.16


  NT_008413 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008413AL13354753543683CHLC.GATA4F01922.001 AL133547.16
S/G/Y/R/B/O NT_008413AL13354753543783CHLC.GATA62F03924.001 AL133547.16
S/G/Y/R/B/O NT_008413AL13354754121713WI-1138926.001 AL133547.16
S/G/Y/R/B/O NT_008413AL13354754400243D9S1681925.001 AL133547.16
S/G/Y/R/B/O NT_008413AL13578654520103      
S/G/Y/R/B/O NT_008413AL16225356885003WI-5527927.001 AL162253.17
S/G/Y/R/B/O NT_008413AL35474457703553WI-10787928.001 AL354744.13
S/G/Y/R/B/O NT_008413AL13698058035883      
S/G/Y/R/B/O NT_008413AL36536059730503      
S/G/Y/R/B/O NT_008413AL35360661299733      
S/G/Y/R/B/O NT_008413AL16238461650323IB791929.001 AC022252.2, AL162384.14
S/G/Y/R/B/O NT_008413AL35374163204573WI-4805930.001 AL353741.16
S/G/Y/R/B/O NT_008413AL35374163899423D9S1852933.001 AL353741.16
S/G/Y/R/B/O NT_008413AL36022164255493      
S/G/Y/R/B/O NT_008413AL13348065108633WI-1931932.001 AC021645.10, AL133480.9
S/G/Y/R/B/O NT_008413AL13348065477273AFM150XG7931.001 AC021645.10, AL133480.9
S/G/Y/R/B/O NT_008413AL35371866808873WI-4409934.001 AL353718.10
S/G/Y/R/B/O NT_008413AL35371866864573WI-7214937.002 AC108215.4, AL353718.10
S/G/Y/R/B/O NT_008413AL35371867396633CHLC.GATA8A10935.001 AL353718.10
S/G/Y/R/B/O NT_008413AL35371867396633CHLC.GATA8E06936.001 AL353718.10
S/G/Y/R/B/O NT_008413AL16241167657163      
S/G/Y/R/B/O NT_008413AL35470768236803      
S/G/Y/R/B/O NT_008413AL44559270104853D9S281939.001 AL445592.15
S/G/Y/R/B/O NT_008413AL51341271425003CHLC.GGAT12H06938.001 AL137020.13, AL513412.2
S/G/Y/R/B/O NT_008413AL13702071533743      
S/G/Y/R/B/O NT_008413AL16144373287023WI-5271940.001 AL161443.13
S/G/Y/R/B/O NT_008413AL51331374549963D9S1849941.001 AL513313.6
S/G/Y/R/B/O NT_008413AL15770375558703WI-3535942.001 AL157703.14, AL391872.7
S/G/Y/R/B/O NT_008413AL39187277194553WI-3355944.001 AC023475.2, AL391872.7
S/G/Y/R/B/O NT_008413AL59150977307493      
S/G/Y/R/B/O NT_008413AL35469478355933      
S/G/Y/R/B/O NT_008413AL39198379888173      
S/G/Y/R/B/O NT_008413AL13592381336443WI-4878943.001 AL135923.15
S/G/Y/R/B/O NT_008413AL13578882204703      
S/G/Y/R/B/O NT_008413AL35777383165733      
S/G/Y/R/B/O NT_008413AL44592683493483      
S/G/Y/R/B/O NT_008413AL59039785234483WI-646116243.001 AC026466.4, AL590397.7
S/G/Y/R/B/O NT_008413AL13712585745973      
S/G/Y/R/B/O NT_008413AL35658486545653      
S/G/Y/R/B/O NT_008413AL58380588200543      
S/G/Y/R/B/O NT_008413AL45113089077823      
S/G/Y/R/B/O NT_008413AL66990890060103      
S/G/Y/R/B/O NT_008413AL59645190087373      
S/G/Y/R/B/O NT_008413AL35363891936123WI-10059946.001 AC016418.4, AL353638.15, AL356033.1
S/G/Y/R/B/O NT_008413AL59113392963173      
S/G/Y/R/B/O NT_008413AL59162293607943      
S/G/Y/R/B/O NT_008413AL35472294487383      
S/G/Y/R/B/O NT_008413AL35373395727843      
S/G/Y/R/B/O NT_008413AL15782697546383D9S144947.001 AL157826.8
S/G/Y/R/B/O NT_008413AL39186498171133      


  NT_008413 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008413AL51342298479333      
S/G/Y/R/B/O NT_008413AL13785199873393      
S/G/Y/R/B/O NT_008413AL441884100432743AFM275YB9948.001 AL441884.5
S/G/Y/R/B/O NT_008413AL441884101523833WI-3357945.001 AL441884.5
S/G/Y/R/B/O NT_008413AL390723101635103      
S/G/Y/R/B/O NT_008413AL133479103837443CHLC.GATA84D07949.001 AL133479.11
S/G/Y/R/B/O NT_008413AL590307104254503      
S/G/Y/R/B/O NT_008413AL137069104274443      
S/G/Y/R/B/O NT_008413AL356054105972963      
S/G/Y/R/B/O NT_008413AL135790106629983CHLC.GATA21A06950.001 AL135790.7
S/G/Y/R/B/O NT_008413AL135790107417333D9S168951.001 AL135790.7
S/G/Y/R/B/O NT_008413AL513024108067393      
S/G/Y/R/B/O NT_008413AL161788110473733AFMB292XG5954.001 AL161788.13
S/G/Y/R/B/O NT_008413 - D9S16391.001 AL353795.13, AL391668.9
S/G/Y/R/B/O NT_008413 - CHLC.GGAA8B0492.001 AC006312.8, AL590708.18
S/G/Y/R/B/O NT_008413 - WI-929497.001 AC109319.3