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  Chromosome 9 - YAC Map - Single Contig
 

Chromosome 9 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_035002 NT_023974 NT_033214 NT_030759 NT_030753
NT_033213 NT_035003 NT_033210 NT_035004 NT_008389 NT_035005 NT_035006 NT_035007
NT_035008 NT_033219 NT_033217 NT_035009 NT_029359 NT_033209 NT_033206 NT_033208
NT_035010 NT_031835 NT_033212 NT_031832 NT_035011 NT_033205 NT_033211 NT_033207
NT_008580 NT_023935 NT_028278 NT_023975 NT_023932 NT_024010 NT_035012 NT_008476
NT_035013 NT_033216 NT_008470 NT_017568 NT_029366 NT_008338 NT_035014 NT_017539
NT_008554 NT_030058 NT_019501 NT_033215 NT_024000 NT_035015 NT_023929


  NT_017568
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_017568AL3537421016596433WI-39319301.001 AC011877.3, AC068050.6, AL353742.22
S/G/Y/R/B/O NT_017568AL1370191018257343      
S/G/Y/R/B/O NT_017568AL3537661020052763      
S/G/Y/R/B/O NT_017568AL6699831021868183      
S/G/Y/R/B/O NT_017568AL3587791022868913WI-51299303.001 AC025005.3, AL358779.13
S/G/Y/R/B/O NT_017568AL3596921023906523      
S/G/Y/R/B/O NT_017568AL3547971025771603NIB15299304.001 AC013783.4, AL354797.16
S/G/Y/R/B/O NT_017568AL6698941026531683      
S/G/Y/R/B/O NT_017568AL3588151026551623      
S/G/Y/R/B/O NT_017568AL3599631028511323D9S18359305.001 AC013568.3, AL359963.29
S/G/Y/R/B/O NT_017568AL3599631029361793WI-63179306.001 AC013568.3, AL359963.29
S/G/Y/R/B/O NT_017568AL4500251029790083      
S/G/Y/R/B/O NT_017568AL1627331029856113      
S/G/Y/R/B/O NT_017568AL1357891031771963D9S1609308.001 AL135789.18
S/G/Y/R/B/O NT_017568AL1357891032771413WI-20329307.001 AL135789.18
S/G/Y/R/B/O NT_017568AL1588291033043723      
S/G/Y/R/B/O NT_017568AL6272251034390953      
S/G/Y/R/B/O NT_017568AL3538061034410893      
S/G/Y/R/B/O NT_017568AL1588231035501423      
S/G/Y/R/B/O NT_017568AL3535981037237003      
S/G/Y/R/B/O NT_017568AL1581581038044513WI-78489309.001 AL158158.14
S/G/Y/R/B/O NT_017568AL1581581038872073D9S16759311.001 AL158158.14
S/G/Y/R/B/O NT_017568AL1581581039081813D9S18549312.001 AL158158.14
S/G/Y/R/B/O NT_017568AL1581581039267593WI-66639310.001 AL158158.14
S/G/Y/R/B/O NT_017568AL3549821039910033      
S/G/Y/R/B/O NT_017568AL5924631041080803      
S/G/Y/R/B/O NT_017568AL5133281042028593      
S/G/Y/R/B/O NT_017568AL1578811044337403IB2809315.001 AL157881.14, AL442064.10, AL590646.6, AP000882.2
S/G/Y/R/B/O NT_017568AL4420641045727043AFM317ZF19313.001 AC007157.6, AL442064.10
S/G/Y/R/B/O NT_017568AC0071571046613903D9S16839314.001 AL365231.11
S/G/Y/R/B/O NT_017568AL3652311046655303      
S/G/Y/R/B/O NT_017568AL1624141046742453      
S/G/Y/R/B/O NT_017568AL3546611048508343      
S/G/Y/R/B/O NT_017568AL1591681049888033      
S/G/Y/R/B/O NT_017568AL1357871051794453D9S16889317.001 AL135787.13
S/G/Y/R/B/O NT_017568AL1357871052178953WI-19999316.001 AL135787.13
S/G/Y/R/B/O NT_017568AL3564911052790613      
S/G/Y/R/B/O NT_017568AL3548771053374113      
S/G/Y/R/B/O NT_017568AL4420661054516473      
S/G/Y/R/B/O NT_017568AL1387561055399573      
S/G/Y/R/B/O NT_017568AL1588241057414423D9S18569334.001 AC073213.2, AL158824.11, AL355533.12
S/G/Y/R/B/O NT_017568AL3590731058743703      
S/G/Y/R/B/O NT_017568AL1627321060343933CHLC.GATA48D079333.001 AC016904.4, AL162732.43
S/G/Y/R/B/O NT_017568AL4451871061243733      
S/G/Y/R/B/O NT_017568AL3900671062293513WI-35849335.001 AC025899.2, AC067868.2, AL390067.19
S/G/Y/R/B/O NT_017568AL3602351063125653      
S/G/Y/R/B/O NT_017568AL1390411064107043WI-47919332.001 AL139041.17
S/G/Y/R/B/O NT_017568AL1390411064242163WI-54149331.001 AL139041.17
S/G/Y/R/B/O NT_017568AL1390411064340313WI-29899330.001 AL139041.17
S/G/Y/R/B/O NT_017568AL1625881066195433D9S1749328.001 AL162588.22


  NT_017568 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_017568AL4491051066240853      
S/G/Y/R/B/O NT_017568AL4493051068209013D9S2629327.001 AL449305.4
S/G/Y/R/B/O NT_017568AL4493051068528613STSG-100039326.001 AL449305.4
S/G/Y/R/B/O NT_017568AL4493051068822653WI-30309329.001 AL449305.4
S/G/Y/R/B/O NT_017568AL1370661069339203WI-62079325.001 AL137066.15
S/G/Y/R/B/O NT_017568AL3594551070256833D9S1069324.001 AL359455.22
S/G/Y/R/B/O NT_017568AL3594551070257263D9S2799323.001 AL359455.22
S/G/Y/R/B/O NT_017568AL3594551071044953WI-67999322.001 AC002320.1, AL359455.22
S/G/Y/R/B/O NT_017568AL1627271071991683AFMB315ZH99321.001 AC022644.2, AL162727.20
S/G/Y/R/B/O NT_017568AL1627271072136913D9S2899318.001 AC022644.2, AL162727.20
S/G/Y/R/B/O NT_017568AL1627271072148853WI-64329320.001 AC022644.2, AL162727.20
S/G/Y/R/B/O NT_017568AL1577021072419293WI-25259319.001 AC022644.2, AL157702.10
S/G/Y/R/B/O NT_017568AL1623931073802253      
S/G/Y/R/B/O NT_017568AL1378501075644273      
S/G/Y/R/B/O NT_017568AL4455431076901693      
S/G/Y/R/B/O NT_017568AL3567961078303963      
S/G/Y/R/B/O NT_017568AL1388951079559693      
S/G/Y/R/B/O NT_017568AL1602751081907113CHLC.GGAT3C119337.001 AL160275.14, AL645562.6
S/G/Y/R/B/O NT_017568AL3902401083091113D9S18559336.001 AL390240.18, AL645562.6
S/G/Y/R/B/O NT_017568AL1334121083677463      
S/G/Y/R/B/O NT_017568AL1624251085810003WI-90729338.001 AL162425.15
S/G/Y/R/B/O NT_017568AL1624251086478863AFM206ZE39341.001 AL162425.15
S/G/Y/R/B/O NT_017568AL1624251086966423D9S1559340.001 AL353589.2
S/G/Y/R/B/O NT_017568AL3556011087600063CHLC.GATA27B079339.001 AL353589.2, AL355601.18
S/G/Y/R/B/O NT_017568AB0208691088436133      
S/G/Y/R/B/O NT_017568AB0208701089416153      
S/G/Y/R/B/O NT_017568AB0208711090416153      
S/G/Y/R/B/O NT_017568AB0208721091416153      
S/G/Y/R/B/O NT_017568AB0208731092573283CHLC.GGAA16D029343.001 AL691420.13
S/G/Y/R/B/O NT_017568AB0208731092880623D9S1779342.001 AL731897.12
S/G/Y/R/B/O NT_017568AB0208741093416153      
S/G/Y/R/B/O NT_017568AB0208751094416153      
S/G/Y/R/B/O NT_017568AB0208761095847133WI-30429344.001 AC018530.4, AL691426.9, AL731835.7
S/G/Y/R/B/O NT_017568AB0208771096416153      
S/G/Y/R/B/O NT_017568AB0208781098218323CHLC.GGAT11B019345.001  
S/G/Y/R/B/O NT_017568AL3531411098521403      
S/G/Y/R/B/O NT_017568AL1370241098954183D9S1709346.001 AL137024.27
S/G/Y/R/B/O NT_017568AL1370241099509493WI-46209350.001 AL137024.27
S/G/Y/R/B/O NT_017568AL1370241099704923CHLC.GGAT2B03.10909347.001 AC032004.2, AL137024.27
S/G/Y/R/B/O NT_017568AL1370241099884493WI-80109348.001 AC007940.3, AC032004.2, AL137024.27
S/G/Y/R/B/O NT_017568AL6699631100270463      
S/G/Y/R/B/O NT_017568AL1332821100282593      
S/G/Y/R/B/O NT_017568AL1332841101687853D9S1549349.001 AL133284.13
S/G/Y/R/B/O NT_017568AL1578291104418023CHLC.GATA61E129351.001 AL157829.24
S/G/Y/R/B/O NT_017568AL3920851104746263      
S/G/Y/R/B/O NT_017568AL3549811110004561WI-55789352.001 AL354981.28
S/G/Y/R/B/O NT_017568AL7140011106572503      
S/G/Y/R/B/O NT_017568AL7318411107147851      
S/G/Y/R/B/O NT_017568AL3556081110243793      
S/G/Y/R/B/O NT_017568AL3587921111569693      


  NT_017568 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_017568AL4456441113260503D9S18119353.001 AL356386.15, AL445644.6
S/G/Y/R/B/O NT_017568AL1616301113594633      
S/G/Y/R/B/O NT_017568AL1602721115915273D9S18649357.001 AL160272.16
S/G/Y/R/B/O NT_017568AL3547541117053113      
S/G/Y/R/B/O NT_017568AL4456631118188453      
S/G/Y/R/B/O NT_017568AL1588311121677113WI-55239356.001 AL158831.15
S/G/Y/R/B/O NT_017568AL3651951122002923CHLC.GATA64G079355.001 AL365195.17
S/G/Y/R/B/O NT_017568AL3651951122423563WI-40629354.001 AC103799.1, AL365195.17
S/G/Y/R/B/O NT_017568AL4454401122585913      
S/G/Y/R/B/O NT_017568AL3555921124224243      
S/G/Y/R/B/O NT_017568AL5897031125928743      
S/G/Y/R/B/O NT_017568AL1577801126395713      
S/G/Y/R/B/O NT_017568AL5126021127976853      
S/G/Y/R/B/O NT_017568AL4453101128415023D9S18489361.001 AL445310.9
S/G/Y/R/B/O NT_017568AL4453101128941313D9S18729360.001 AC006239.5, AL445310.9
S/G/Y/R/B/O NT_017568AL3537731130335513IB30899359.001 AC006239.5, AL353773.9
S/G/Y/R/B/O NT_017568AL1388941131701323AFMA239ZE19358.001 AL138894.11
S/G/Y/R/B/O NT_017568AL1388941132309533WI-62579363.001 AL138894.11
S/G/Y/R/B/O NT_017568AL1388941132339233D9S1959362.001 AL138894.11
S/G/Y/R/B/O NT_017568AL3536301132488993      
S/G/Y/R/B/O NT_017568AC0062881135282343WI-13069365.001 AC006288.1, AL445683.11
S/G/Y/R/B/O NT_017568AC0062881135469503AFMA239XA99364.001 AC006288.1, AL445683.11
S/G/Y/R/B/O NT_017568AL4456831135504833      
S/G/Y/R/B/O NT_017568AL3549311137634063CHLC.GGAA23B109367.001 AL354931.13
S/G/Y/R/B/O NT_017568AL4419891138553573WI-57259366.001 AL441989.13
S/G/Y/R/B/O NT_017568AL3555891140309633D9S2589368.001 AC006952.6, AL355589.8
S/G/Y/R/B/O NT_017568AL5925491140969693CHLC.GATA65D119369.001 AC006952.6, AL592549.7
S/G/Y/R/B/O NT_017568AL3537361141760433      
S/G/Y/R/B/O NT_017568AL3918701143229153      
S/G/Y/R/B/O NT_017568AL5906421144021393WI-30209370.001 AC110007.1, AL353761.4, AL590642.9
S/G/Y/R/B/O NT_017568AL1388361144712763WI-35609371.001 AC015881.3, AL138836.15, AL353761.4
S/G/Y/R/B/O NT_017568AL1619111146249173      
S/G/Y/R/B/O NT_017568AL3547921147339933      
S/G/Y/R/B/O NT_017568AC0064301148048713D9S18239372.001 AC006430.22
S/G/Y/R/B/O NT_017568AL1370681150457573FB23F19375.001 AC006558.1, AL137068.10
S/G/Y/R/B/O NT_017568AL5131221151915333CHLC.GGAT4D11.13679373.001 AC006558.1, AL513122.7
S/G/Y/R/B/O NT_017568AL1617841152033893      
S/G/Y/R/B/O NT_017568AL3596441153297763WI-46789374.001 AC011969.3, AL359644.10
S/G/Y/R/B/O NT_017568AL3579361153912583      
S/G/Y/R/B/O NT_017568AL3652741154967873      
S/G/Y/R/B/O NT_017568AL4502851156667283      
S/G/Y/R/B/O NT_017568AL5962441156749813      
S/G/Y/R/B/O NT_017568AL4455871157184503      
S/G/Y/R/B/O NT_017568AL4426341159192663FB24A129376.001 AL442634.13
S/G/Y/R/B/O NT_017568AL1624231159454553      
S/G/Y/R/B/O NT_017568AL1624241160317783      
S/G/Y/R/B/O NT_017568AL3596361162546983      
S/G/Y/R/B/O NT_017568AL1622541165428343AFMA239XE99377.001 AC006313.1, AL162254.17
S/G/Y/R/B/O NT_017568AC0063131165579483      
S/G/Y/R/B/O NT_017568AL3595121166660483      


  NT_017568 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_017568AC0070661168109113WI-52799378.001 AC007066.4, AL731645.4
S/G/Y/R/B/O NT_017568AL3589461169117483      
S/G/Y/R/B/O NT_017568AL3653381170039873WI-100449379.001 AC007172.6, AL365338.17
S/G/Y/R/B/O NT_017568AL3655041170716383      
S/G/Y/R/B/O NT_017568AL4454891172261503      
S/G/Y/R/B/O NT_017568AL1617901174000193      
S/G/Y/R/B/O NT_017568AL3907741175189151      
S/G/Y/R/B/O NT_017568 - D9S2619302.000 AC011877.3, AC068050.6