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  Chromosome 9 - YAC Map - Single Contig
 

Chromosome 9 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_035002 NT_023974 NT_033214 NT_030759 NT_030753
NT_033213 NT_035003 NT_033210 NT_035004 NT_008389 NT_035005 NT_035006 NT_035007
NT_035008 NT_033219 NT_033217 NT_035009 NT_029359 NT_033209 NT_033206 NT_033208
NT_035010 NT_031835 NT_033212 NT_031832 NT_035011 NT_033205 NT_033211 NT_033207
NT_008580 NT_023935 NT_028278 NT_023975 NT_023932 NT_024010 NT_035012 NT_008476
NT_035013 NT_033216 NT_008470 NT_017568 NT_029366 NT_008338 NT_035014 NT_017539
NT_008554 NT_030058 NT_019501 NT_033215 NT_024000 NT_035015 NT_023929


  NT_023974
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023974AL353895189938383WI-2408979.001 AL353895.4, AL449963.2
S/G/Y/R/B/O NT_023974AL591423190833003      
S/G/Y/R/B/O NT_023974AL158150191354933      
S/G/Y/R/B/O NT_023974AL356000193015043      
S/G/Y/R/B/O NT_023974AL591206193886813      
S/G/Y/R/B/O NT_023974AL161909195173943      
S/G/Y/R/B/O NT_023974AL391834197092913WI-1403980.001 AC109451.1, AL391834.8
S/G/Y/R/B/O NT_023974AL158206197633963      
S/G/Y/R/B/O NT_023974AL133281199459473D9S1684982.001 AL133281.11
S/G/Y/R/B/O NT_023974AL133281200099793D9S162981.001 AL133281.11
S/G/Y/R/B/O NT_023974AL158077200854353      
S/G/Y/R/B/O NT_023974AL591222202774213CHLC.GGAA11A06986.001 AL591222.2
S/G/Y/R/B/O NT_023974AL731856203551373      
S/G/Y/R/B/O NT_023974AL445595204244491WI-1295983.001 AL445595.3
S/G/Y/R/B/O NT_023974AL512635206751723WI-7821984.001 AC002050.6, AL512635.8, AL513498.2, AL606844.3
S/G/Y/R/B/O NT_023974AL513498206913383      
S/G/Y/R/B/O NT_023974AL163193208179923      
S/G/Y/R/B/O NT_023974AL627410209376373      
S/G/Y/R/B/O NT_023974AL354879209402383      
S/G/Y/R/B/O NT_023974AL445624210559561WI-2374985.001 AL445624.1
S/G/Y/R/B/O NT_023974AL392163211240523      
S/G/Y/R/B/O NT_023974AL662879212797131      
S/G/Y/R/B/O NT_023974AL390882214046923WI-7032987.001 AL390882.12
S/G/Y/R/B/O NT_023974AL390882214682193WI-7591988.001 AL390882.12
S/G/Y/R/B/O NT_023974AL512606214960543      
S/G/Y/R/B/O NT_023974AL162420216574133NIB1374990.001 AL162420.13
S/G/Y/R/B/O NT_023974AL353732217374223WI-9020989.001 AL353732.14
S/G/Y/R/B/O NT_023974AL137022218440633      
S/G/Y/R/B/O NT_023974AL355679220138173      
S/G/Y/R/B/O NT_023974AL359922220721923      
S/G/Y/R/B/O NT_023974AL449423222388483      
S/G/Y/R/B/O NT_023974AL354709224265603WI-5735991.001 AL354709.15
S/G/Y/R/B/O NT_023974AL354709224305093D9S1870992.001 AL354709.15
S/G/Y/R/B/O NT_023974AL157937226124943AFM234YH4993.001 AL157937.21
S/G/Y/R/B/O NT_023974AL161730226472193      
S/G/Y/R/B/O NT_023974AL583802228171853      
S/G/Y/R/B/O NT_023974AL603704229173113      
S/G/Y/R/B/O NT_023974AC017067229565483      
S/G/Y/R/B/O NT_023974AL645734231459213      
S/G/Y/R/B/O NT_023974AL391117232208023      
S/G/Y/R/B/O NT_023974AL391667233787423      
S/G/Y/R/B/O NT_023974AL357615234890841      
S/G/Y/R/B/O NT_023974AL357614235194591      
S/G/Y/R/B/O NT_023974AL163528235217161      
S/G/Y/R/B/O NT_023974AL442637236974053      
S/G/Y/R/B/O NT_023974AL445623240028303WI-7383994.001 AC011060.5, AL161628.9, AL445623.2
S/G/Y/R/B/O NT_023974AL161628240336563      
S/G/Y/R/B/O NT_023974AL365204241440943      
S/G/Y/R/B/O NT_023974AL513317242731853      
S/G/Y/R/B/O NT_023974AL354777244135533      


  NT_023974 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023974AL161724246119063GCT16E06996.001 AC010384.4, AC010471.4, AL161724.10, AP001391.2
S/G/Y/R/B/O NT_023974AL445241246949683      
S/G/Y/R/B/O NT_023974AL441928247379183      
S/G/Y/R/B/O NT_023974AL162232248450553D9S171997.001 AL162232.14
S/G/Y/R/B/O NT_023974AL353811248707523      
S/G/Y/R/B/O NT_023974AL513333250909603D9S1679998.001 AL513333.10
S/G/Y/R/B/O NT_023974AL157830251826413WI-2415999.001 AL157830.10
S/G/Y/R/B/O NT_023974AL157830251909673AFM220XF2995.001 AL157830.10
S/G/Y/R/B/O NT_023974AL355975252605543      
S/G/Y/R/B/O NT_023974AL627260253902593      
S/G/Y/R/B/O NT_023974AL353772254990743      
S/G/Y/R/B/O NT_023974AL158074256131443      
S/G/Y/R/B/O NT_023974AL353730257692033D9S2659100.001 AL353730.13
S/G/Y/R/B/O NT_023974AL590322258944443      
S/G/Y/R/B/O NT_023974AL391475261008233WI-54969101.001 AL391475.7
S/G/Y/R/B/O NT_023974AL391649261740883      
S/G/Y/R/B/O NT_023974AL353753262734603WI-18609102.001 AC023574.4, AL353753.6
S/G/Y/R/B/O NT_023974AL353753263306653D9S2599103.001 AL353753.6
S/G/Y/R/B/O NT_023974AL353753263856573CHLC.GATA51G089104.001 AL353753.6
S/G/Y/R/B/O NT_023974AL356791264922893AFM218XG119105.001 AL356791.9
S/G/Y/R/B/O NT_023974AL592226265112393      
S/G/Y/R/B/O NT_023974AL356156266105783      
S/G/Y/R/B/O NT_023974AL590078267391763      
S/G/Y/R/B/O NT_023974AL442639268767413      
S/G/Y/R/B/O NT_023974AL451137270026403      
S/G/Y/R/B/O NT_023974AL356133271093703      
S/G/Y/R/B/O NT_023974AL355432272951751      
S/G/Y/R/B/O NT_023974AL355433273582783      
S/G/Y/R/B/O NT_023974AL133411275419873WI-78149106.001 AL133411.9
S/G/Y/R/B/O NT_023974AL133411275508593D9S1699107.001 AL133411.9
S/G/Y/R/B/O NT_023974AL163192276786723WI-35579108.001 AL163192.6
S/G/Y/R/B/O NT_023974AL451123277736843      
S/G/Y/R/B/O NT_023974AL355585279445603D9S1619109.001 AC025611.3, AL355585.15
S/G/Y/R/B/O NT_023974AL162396280112403WI-48469110.001 AL162396.18
S/G/Y/R/B/O NT_023974AL360014281495933D9S2639111.001 AL360014.30
S/G/Y/R/B/O NT_023974AL353746282498613WI-64099112.002 AC110294.3, AC110750.4, AL353746.6
S/G/Y/R/B/O NT_023974AL451124284557383WI-24559113.001 AL390250.5, AL451124.13
S/G/Y/R/B/O NT_023974AL596323285266993      
S/G/Y/R/B/O NT_023974AL353683286673563D9S16789115.001 AL353683.7
S/G/Y/R/B/O NT_023974AL353683287171033D9S2709116.001 AL353683.7
S/G/Y/R/B/O NT_023974AL445526288141963D9S18759114.001 AL445526.9
S/G/Y/R/B/O NT_023974AL592206289395863      
S/G/Y/R/B/O NT_023974AL450428289950833      
S/G/Y/R/B/O NT_023974AL158072290836193D9S1049118.001 AC025377.3, AL158072.9
S/G/Y/R/B/O NT_023974AL158072290928973D9S18689117.001 AC025377.3
S/G/Y/R/B/O NT_023974AL354758292888183WI-23789119.001 AC011784.3, AL354758.14
S/G/Y/R/B/O NT_023974AL360180293711563      
S/G/Y/R/B/O NT_023974AL162388294482893      
S/G/Y/R/B/O NT_023974AL353684296245403D9S529121.001 AL353684.8
S/G/Y/R/B/O NT_023974AL138893298719343CHLC.GATA12C069120.001 AC022901.2, AL138893.5


  NT_023974 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023974AL354676298893713      
S/G/Y/R/B/O NT_023974AL513132299613113      
S/G/Y/R/B/O NT_023974AL590672301400103      
S/G/Y/R/B/O NT_023974AL451045301985423      
S/G/Y/R/B/O NT_023974AL392110303652533WI-55059122.001 AL392110.12
S/G/Y/R/B/O NT_023974AL392110304346563WI-56129123.001 AC041036.2, AL392110.12
S/G/Y/R/B/O NT_023974AL390883304495343      
S/G/Y/R/B/O NT_023974AL159995305238873      
S/G/Y/R/B/O NT_023974AL353808306869373      
S/G/Y/R/B/O NT_023974AL354704307291993      
S/G/Y/R/B/O NT_023974AL390844308579173      
S/G/Y/R/B/O NT_023974AL590726310214943      
S/G/Y/R/B/O NT_023974AL353735311323803      
S/G/Y/R/B/O NT_023974AL353745311927143D9S439124.001 AL353745.7
S/G/Y/R/B/O NT_023974AL355582313569613D9S147E9125.001 AL355582.8
S/G/Y/R/B/O NT_023974AL354854314649483      
S/G/Y/R/B/O NT_023974AL353783316324983      
S/G/Y/R/B/O NT_023974AL162728317670863      
S/G/Y/R/B/O NT_023974AL590676318398063AFM113XG119126.001 AL590676.11
S/G/Y/R/B/O NT_023974AL731815319213843      
S/G/Y/R/B/O NT_023974AL353728319233783      
S/G/Y/R/B/O NT_023974AL160407320871173      
S/G/Y/R/B/O NT_023974AL161444322374703CHLC.GATA71E089127.001 AL161444.18
S/G/Y/R/B/O NT_023974AL451138322632863      
S/G/Y/R/B/O NT_023974AL589825323785593      
S/G/Y/R/B/O NT_023974AL513167324341373      
S/G/Y/R/B/O NT_023974AL353573326361163CHLC.GATA5E069128.001 AL353573.10
S/G/Y/R/B/O NT_023974AL161783326665713      
S/G/Y/R/B/O NT_023974AL353671327762633      
S/G/Y/R/B/O NT_023974AL589642329298483      
S/G/Y/R/B/O NT_023974AL157884331838943AFMA153TD99129.001 AC015553.21, AL157884.9
S/G/Y/R/B/O NT_023974AL353717331957623      
S/G/Y/R/B/O NT_023974AL162590333517033IB31009135.002 AC092675.2, AL162590.15
S/G/Y/R/B/O NT_023974AL162590333709053WI-53409134.001 AL162590.15
S/G/Y/R/B/O NT_023974AL161445334243223WI-75349137.001 AL161445.10
S/G/Y/R/B/O NT_023974AL161445334480573D9S17889130.001 AL161445.10
S/G/Y/R/B/O NT_023974AL161445334690163D9S18459132.001 AL161445.10
S/G/Y/R/B/O NT_023974AL161445334855033D9S1659131.001 AL161445.10
S/G/Y/R/B/O NT_023974AL356472336050823WI-56569133.001 AC027812.2, AC034144.5, AL356472.17
S/G/Y/R/B/O NT_023974AL356218336685583      
S/G/Y/R/B/O NT_023974AL139008339335113D9S18789136.001 AL139008.10
S/G/Y/R/B/O NT_023974AL356489339673713      
S/G/Y/R/B/O NT_023974AL358573340979103      
S/G/Y/R/B/O NT_023974AL139113341109083      
S/G/Y/R/B/O NT_023974AL354989343021883      
S/G/Y/R/B/O NT_023974AL160051344521783      
S/G/Y/R/B/O NT_023974AL353662344818103      
S/G/Y/R/B/O NT_023974AL356494346478083      
S/G/Y/R/B/O NT_023974AL160270347295583      
S/G/Y/R/B/O NT_023974AL450283349266723      


  NT_023974 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023974AL162231349586803      
S/G/Y/R/B/O NT_023974AL589645351431133      
S/G/Y/R/B/O NT_023974AL355377351894363      
S/G/Y/R/B/O NT_023974AL353795354390883D9S16391.001 AL353795.13, AL391668.9
S/G/Y/R/B/O NT_023974AL354669355375953      
S/G/Y/R/B/O NT_023974AL160274356347533WI-55999138.001 AL160274.9
S/G/Y/R/B/O NT_023974AL592145357503903      
S/G/Y/R/B/O NT_023974AL133476357542753      
S/G/Y/R/B/O NT_023974AL357874359061013      
S/G/Y/R/B/O NT_023974AL133410359924293      
S/G/Y/R/B/O NT_023974AL135841362729193D9S18049139.001 AL135841.11
S/G/Y/R/B/O NT_023974AL138834362874933      
S/G/Y/R/B/O NT_023974AL158830364108063      
S/G/Y/R/B/O NT_023974AL161792366021423      
S/G/Y/R/B/O NT_023974AL354935367055853D9S17919140.001 AL354935.23
S/G/Y/R/B/O NT_023974AL354932368007953      
S/G/Y/R/B/O NT_023974AL442063369566843      
S/G/Y/R/B/O NT_023974AL450267371507413WI-76779141.001 AL450267.10, AP002388.1
S/G/Y/R/B/O NT_023974AL161781372196273      
S/G/Y/R/B/O NT_023974AL603912373767233      
S/G/Y/R/B/O NT_023974AL512604375344753D9S18749142.001 AL512604.14
S/G/Y/R/B/O NT_023974AL358118375877533WI-4719143.001 AC024283.2, AL158155.24
S/G/Y/R/B/O NT_023974AL158155375878513      
S/G/Y/R/B/O NT_023974AL158156377781873      
S/G/Y/R/B/O NT_023974AL513165378231003WI-94259144.001 AL513165.12
S/G/Y/R/B/O NT_023974AL591470380115163      
S/G/Y/R/B/O NT_023974AL138752380837253WI-69509145.001 AL138752.5, AL139414.5
S/G/Y/R/B/O NT_023974AL583849382573973      
S/G/Y/R/B/O NT_023974AL161448384073153WI-7289146.001 AL161448.16
S/G/Y/R/B/O NT_023974AL445986384664273      
S/G/Y/R/B/O NT_023974AL135785386670023GCT17B099147.001 AL135785.10
S/G/Y/R/B/O NT_023974AL390794387495073      
S/G/Y/R/B/O NT_023974AL390726387984983      
S/G/Y/R/B/O NT_023974AL591543390344981WI-30289148.001 AL591543.16