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  Chromosome 9 - YAC Map - Single Contig
 

Chromosome 9 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_035002 NT_023974 NT_033214 NT_030759 NT_030753
NT_033213 NT_035003 NT_033210 NT_035004 NT_008389 NT_035005 NT_035006 NT_035007
NT_035008 NT_033219 NT_033217 NT_035009 NT_029359 NT_033209 NT_033206 NT_033208
NT_035010 NT_031835 NT_033212 NT_031832 NT_035011 NT_033205 NT_033211 NT_033207
NT_008580 NT_023935 NT_028278 NT_023975 NT_023932 NT_024010 NT_035012 NT_008476
NT_035013 NT_033216 NT_008470 NT_017568 NT_029366 NT_008338 NT_035014 NT_017539
NT_008554 NT_030058 NT_019501 NT_033215 NT_024000 NT_035015 NT_023929


  NT_008580
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008580AL731809617473132      
S/G/Y/R/B/O NT_008580AL353608618797963      
S/G/Y/R/B/O NT_008580AL161457620527873      
S/G/Y/R/B/O NT_008580AL353616621751753      
S/G/Y/R/B/O NT_008580AL354794623576433WI-35649154.001 AL354794.16
S/G/Y/R/B/O NT_008580AL356219624971393      
S/G/Y/R/B/O NT_008580AL162730626125083      
S/G/Y/R/B/O NT_008580AL590238627818893      
S/G/Y/R/B/O NT_008580AL358113629136873WI-93309156.001 AL358113.21
S/G/Y/R/B/O NT_008580AL355140630510463WI-73659161.001 AL355140.25
S/G/Y/R/B/O NT_008580AL355140630514463WI-101379160.001 AL355140.25
S/G/Y/R/B/O NT_008580AL355140630895273WI-72889155.001 AL355140.25
S/G/Y/R/B/O NT_008580AL353693631363403      
S/G/Y/R/B/O NT_008580AL162421632440343WI-41229157.001 AC008248.3
S/G/Y/R/B/O NT_008580AL162412633822383CHLC.ATC4F079158.001 AC008248.3, AL162412.11
S/G/Y/R/B/O NT_008580AL162412633861773D9S159159.001 AC008248.3, AL162412.11
S/G/Y/R/B/O NT_008580AL603625634913503      
S/G/Y/R/B/O NT_008580AL591215635837203D9S2739162.001 AC022857.2, AL591215.12
S/G/Y/R/B/O NT_008580AL606666636553343      
S/G/Y/R/B/O NT_008580AL392044637873233WI-55649163.001 AL392044.7
S/G/Y/R/B/O NT_008580AL158153638485613      
S/G/Y/R/B/O NT_008580AL162390640139133WI-65209164.001 AL162390.9
S/G/Y/R/B/O NT_008580AL442645640758993      
S/G/Y/R/B/O NT_008580AL358786642331913D9S1669165.001 AL358786.21
S/G/Y/R/B/O NT_008580AL159990643433903      
S/G/Y/R/B/O NT_008580AL356318646189053WI-38279166.001 AL356318.7
S/G/Y/R/B/O NT_008580AL592438646333623      
S/G/Y/R/B/O NT_008580AL161913646738753      
S/G/Y/R/B/O NT_008580AL160273648469803CHLC.GATA7D089172.001 AL160273.9
S/G/Y/R/B/O NT_008580AL160273648469833CHLC.GATA7D129173.001 AL160273.9
S/G/Y/R/B/O NT_008580AL391819649677063      
S/G/Y/R/B/O NT_008580AL392106652456643D9S18069169.001 AL392106.4
S/G/Y/R/B/O NT_008580AL161732652980783WI-13469168.001 AC024723.3, AL161732.7
S/G/Y/R/B/O NT_008580AL671309654173703      
S/G/Y/R/B/O NT_008580AL138751655558153AFMA116YG99167.001 AC073124.1, AL138751.18
S/G/Y/R/B/O NT_008580AL583829657271903      
S/G/Y/R/B/O NT_008580AL590311657747633      
S/G/Y/R/B/O NT_008580AL135924660137023WI-95119170.001 AL135924.11
S/G/Y/R/B/O NT_008580AL135924660139663WI-95549171.001 AL135924.11
S/G/Y/R/B/O NT_008580AL445646660656813      
S/G/Y/R/B/O NT_008580AL596448661297013      
S/G/Y/R/B/O NT_008580AL449323662467613WI-93982111.001 AL449323.19
S/G/Y/R/B/O NT_008580AL591662662555533      
S/G/Y/R/B/O NT_008580AL590662664243683      
S/G/Y/R/B/O NT_008580AL162416664565393      
S/G/Y/R/B/O NT_008580AL591031665301483      
S/G/Y/R/B/O NT_008580AL359997666650453      
S/G/Y/R/B/O NT_008580AL449083668321483      
S/G/Y/R/B/O NT_008580AL355604669590933      
S/G/Y/R/B/O NT_008580AL451127671401033      


  NT_008580 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008580AL512594672504363CHLC.GATA61F049179.001 AC053471.2, AL391558.6, AL512594.7, AL590712.4
S/G/Y/R/B/O NT_008580AL627324674131533      
S/G/Y/R/B/O NT_008580AL513124674408403      
S/G/Y/R/B/O NT_008580AL512644676116063      
S/G/Y/R/B/O NT_008580AL603652677535253      
S/G/Y/R/B/O NT_008580AL357872678300643WI-33099177.001 AC019287.3, AL357872.23
S/G/Y/R/B/O NT_008580AL357872678524053CHLC.GATA101B099176.001 AL357872.23
S/G/Y/R/B/O NT_008580AL357872678673913CHLC.GATA28C029178.001 AL357872.23
S/G/Y/R/B/O NT_008580AL355152679002043      
S/G/Y/R/B/O NT_008580AL355674680653683FB9E39175.001 AL355674.10
S/G/Y/R/B/O NT_008580AL137018683203963WI-65459174.001 AL137018.9
S/G/Y/R/B/O NT_008580AL158833683481973      
S/G/Y/R/B/O NT_008580AL354795683569673      
S/G/Y/R/B/O NT_008580AL390874685521573      
S/G/Y/R/B/O NT_008580AL158825685608623      
S/G/Y/R/B/O NT_008580AL133548686881613      
S/G/Y/R/B/O NT_008580AL353756688414533      
S/G/Y/R/B/O NT_008580AL158073689918783D9S1759182.001 AL158073.10
S/G/Y/R/B/O NT_008580AL158073690558523D9S1469184.001 AL158073.10
S/G/Y/R/B/O NT_008580AL158073690699663WI-58299183.001 AL158073.10
S/G/Y/R/B/O NT_008580AL158073691302643D9S2849181.001 AC010828.3, AL158073.10
S/G/Y/R/B/O NT_008580AL353780691699413      
S/G/Y/R/B/O NT_008580AL160280692561793      
S/G/Y/R/B/O NT_008580AL157883693632103      
S/G/Y/R/B/O NT_008580AL359253695507163D9S2769180.001 AL359253.17
S/G/Y/R/B/O NT_008580AL359253695694783WI-29029187.001 AL359253.17
S/G/Y/R/B/O NT_008580AL353607697256963      
S/G/Y/R/B/O NT_008580AL589653698696983WI-108139185.001 AC090995.1, AL589653.9
S/G/Y/R/B/O NT_008580AL589653699270163D9S18079186.001 AL589653.9
S/G/Y/R/B/O NT_008580AL391868699681653      
S/G/Y/R/B/O NT_008580AL590664700683023      
S/G/Y/R/B/O NT_008580AL161626701345193      
S/G/Y/R/B/O NT_008580AL359314703953343AFM207VB89188.001 AC009556.4, AC012249.2, AL359314.14
S/G/Y/R/B/O NT_008580AL390239704660723D9S18349189.001 AL390239.16
S/G/Y/R/B/O NT_008580AL390239705247523D9S18609190.001 AL390239.16
S/G/Y/R/B/O NT_008580AL353637705737661      
S/G/Y/R/B/O NT_008580AL161789707354433CHLC.GATA89A119191.001 AL161789.29
S/G/Y/R/B/O NT_008580AL353710707857273      
S/G/Y/R/B/O NT_008580AL359204709680563D9S16749194.001 AL359204.10
S/G/Y/R/B/O NT_008580AL158159709939513      
S/G/Y/R/B/O NT_008580AL353794711608573      
S/G/Y/R/B/O NT_008580AL359849712292133      
S/G/Y/R/B/O NT_008580AL355535712494243      
S/G/Y/R/B/O NT_008580AL160268714716373CHLC.GATA89C089193.001 AC012196.3, AL160268.14
S/G/Y/R/B/O NT_008580AL160278715601743CHLC.GGAT13B079192.001 AL160278.24, AL161456.16