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  Chromosome 4 - Genetic Maps - Single Contig
 

Chromosome 4 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_026996 NT_006111 NT_022865 NT_006081 NT_033075 NT_029956 NT_006051 NT_033060
NT_033064 NT_006362 NT_006307 NT_006342 NT_029958 NT_016407 NT_033056 NT_030649
NT_006344 NT_023072 NT_033076 NT_006350 NT_006285 NT_006316 NT_023052 NT_006189
NT_022794 NT_006305 NT_022751 NT_022995 NT_033067 NT_006098 NT_029274 NT_033069
NT_016297 NT_022782 NT_033059 NT_006238 NT_022831 NT_022853 NT_022850 NT_022778
NT_022852 NT_033063 NT_022813 NT_022836 NT_022862 NT_006303 NT_030640 NT_033073
NT_006281 NT_006216 NT_033072 NT_022760 NT_006109 NT_006328 NT_022844 NT_030642
NT_006114 NT_030659 NT_006204 NT_033074 NT_023068 NT_006201 NT_006383 NT_006397
NT_033061 NT_033068 NT_006365 NT_028147 NT_028173 NT_006371 NT_025694 NT_031780
NT_016599 NT_031781 NT_016354 NT_033055 NT_033062 NT_033065 NT_006167 NT_006302
NT_022755 NT_022753 NT_022803 NT_022846 NT_022856 NT_022805 NT_022819 NT_022845
NT_006124 NT_022811 NT_006127 NT_006258 NT_016606 NT_029950 NT_028160 NT_029954
NT_022851 NT_022832 NT_015169 NT_006129 NT_022740 NT_029955 NT_022801 NT_022824
NT_006171 NT_022776 NT_022768 NT_006198 NT_006257 NT_022775 NT_006118 NT_022792
NT_006256 NT_006169 NT_022841 NT_033070 NT_022800 NT_033066 NT_033071 NT_028146
NT_029961 NT_025688


  NT_006397
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006397AC1100891024500981        
S/G/Y/R/B/O NT_006397AC0974601025022803        
S/G/Y/R/B/O NT_006397AP0019621027426603UT2079  4104.751 AP001962
S/G/Y/R/B/O NT_006397AC1080611027712003        
S/G/Y/R/B/O NT_006397AC0844211027928073        
S/G/Y/R/B/O NT_006397AC0839021028847813        
S/G/Y/R/B/O NT_006397AP0019601030348293        
S/G/Y/R/B/O NT_006397AC0975301031677223        
S/G/Y/R/B/O NT_006397AP0020261032875903        
S/G/Y/R/B/O NT_006397AC0191311034328623        
S/G/Y/R/B/O NT_006397AC0938361036396023        
S/G/Y/R/B/O NT_006397AC0739751038229373AFMB343WC1  4105.291AC114811, AC114811
S/G/Y/R/B/O NT_006397AC0739751038229373AFMB343WC14103.60  1AC114811, AC114811
S/G/Y/R/B/O NT_006397AC1148111038904691        
S/G/Y/R/B/O NT_006397AC0936341038910361        
S/G/Y/R/B/O NT_006397AP0018671039113943        
S/G/Y/R/B/O NT_006397AC0040611040172773MFD357  4100.751 AC004061
S/G/Y/R/B/O NT_006397AC0926091041102493GGAA18A06  4100.751 AC083952, AC092609, AP001950
S/G/Y/R/B/O NT_006397AC0926091041269983AFMA110XC1  4101.551 AC083952, AC092609
S/G/Y/R/B/O NT_006397AC0926091041269983AFMA110XC14100.00  1 AC083952, AC092609
S/G/Y/R/B/O NT_006397AC1053951042085963        
S/G/Y/R/B/O NT_006397AP0019691043688771        
S/G/Y/R/B/O NT_006397AC1147471043718241        
S/G/Y/R/B/O NT_006397AC0225701043723191        
S/G/Y/R/B/O NT_006397AC0976561043990011        
S/G/Y/R/B/O NT_006397AC0231771045073771        
S/G/Y/R/B/O NT_006397AC0235531045167861        
S/G/Y/R/B/O NT_006397AC0938321046906413        
S/G/Y/R/B/O NT_006397AC0938281049062743AFMB317ZG5  4104.751 AC093828, AP002332
S/G/Y/R/B/O NT_006397AC0938281049062743AFMB317ZG54103.10  1 AC093828, AP002332
S/G/Y/R/B/O NT_006397AC0950541050219453        
S/G/Y/R/B/O NT_006397AC0937211051634843AFM238ZF10  4104.751 AC018969, AC093721
S/G/Y/R/B/O NT_006397AC0937211051634843AFM238ZF104103.10  1 AC018969, AC093721
S/G/Y/R/B/O NT_006397AC0966611052440703AFM274ZC5  4104.751 AC018969, AC096661, AP001945
S/G/Y/R/B/O NT_006397AC0966611052440703AFM274ZC54103.10  1 AC018969, AC096661, AP001945
S/G/Y/R/B/O NT_006397AC0937761054130833GATA25A01  4104.751 AC016078, AC093776, AP002742
S/G/Y/R/B/O NT_006397AC1084641054783553        
S/G/Y/R/B/O NT_006397AC1048161055097533        
S/G/Y/R/B/O NT_006397AC1136131056769961        
S/G/Y/R/B/O NT_006397AC1073891057471081        
S/G/Y/R/B/O NT_006397AC0796161057821853AFM242XD8  4104.751AC107389, AC113613, AC079616, AC107389, AC113613
S/G/Y/R/B/O NT_006397AC0796161057821853AFM242XD84103.10  1AC107389, AC113613, AC079616, AC107389, AC113613
S/G/Y/R/B/O NT_006397AC0965851059256033        
S/G/Y/R/B/O NT_006397AC0045441059652363        
S/G/Y/R/B/O NT_006397AC0799251061318803        
S/G/Y/R/B/O NT_006397AC1085151062145451        
S/G/Y/R/B/O NT_006397AC0218781064519433GATA6D11  4104.751 AC021878
S/G/Y/R/B/O NT_006397AC1082171065654443MFD324  4104.751 AC108217
S/G/Y/R/B/O NT_006397AC0341541065714323        
S/G/Y/R/B/O NT_006397AP0023331067799951        


  NT_006397 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006397AC0206521067931531        
S/G/Y/R/B/O NT_006397AC0924341068693731AFM163YC146.7048.242AC007332, AC092437, AC007332, AC092434, AC092437
S/G/Y/R/B/O NT_006397AC1147341068357641        
S/G/Y/R/B/O NT_006397AC0741201068948393        
S/G/Y/R/B/O NT_006397AC1081591070377391GATA2F11  4104.941AC074120, AC092434, AC074120, AC092434, AC108159
S/G/Y/R/B/O NT_006397AC0096171071290401        
S/G/Y/R/B/O NT_006397AC0588231071401883        
S/G/Y/R/B/O NT_006397AC0789611072824693        
S/G/Y/R/B/O NT_006397AC0190771073161513        
S/G/Y/R/B/O NT_006397AC0738551075045883        
S/G/Y/R/B/O NT_006397AC0188841076956123        
S/G/Y/R/B/O NT_006397AC0936281080063553AFM186XA74107.404109.021AC004063, AC004063, AC093628, AP001862
S/G/Y/R/B/O NT_006397AC0040631080220033        
S/G/Y/R/B/O NT_006397AC0939181081033633        
S/G/Y/R/B/O NT_006397AC0040531082111993AFM150YH64107.404109.021AC105918, AC004053, AC084769, AC105918, AP001955
S/G/Y/R/B/O NT_006397AC1059181082721481        
S/G/Y/R/B/O NT_006397AC0965771083219883        
S/G/Y/R/B/O NT_006397AC0040691084780833        
S/G/Y/R/B/O NT_006397AC0260291086117343        
S/G/Y/R/B/O NT_006397AC1068881088396563AFMA047ZG54107.404109.021 AP001956
S/G/Y/R/B/O NT_006397AC0040661088713283        
S/G/Y/R/B/O NT_006397AC1053911090024383        
S/G/Y/R/B/O NT_006397AC0082431091439363        
S/G/Y/R/B/O NT_006397AC0937821093034573        
S/G/Y/R/B/O NT_006397AC1093611093383993        
S/G/Y/R/B/O NT_006397AP0018201094701483        
S/G/Y/R/B/O NT_006397AP0019571094875571        
S/G/Y/R/B/O NT_006397AC1073811095534903        
S/G/Y/R/B/O NT_006397AC0207491095918271        
S/G/Y/R/B/O NT_006397AC0871081096756571        
S/G/Y/R/B/O NT_006397AC0936801097740661        
S/G/Y/R/B/O NT_006397AC0732291098464041        
S/G/Y/R/B/O NT_006397AC0924581098571723UT2021  4112.621 AC004046, AC092458
S/G/Y/R/B/O NT_006397AC1054001099690233        
S/G/Y/R/B/O NT_006397AC0924451100594853        
S/G/Y/R/B/O NT_006397AC1048291102313103        
S/G/Y/R/B/O NT_006397AC0040581102953023        
S/G/Y/R/B/O NT_006397AC0030991103317023        
S/G/Y/R/B/O NT_006397AP0018191104267273        
S/G/Y/R/B/O NT_006397AC1046631105883483        
S/G/Y/R/B/O NT_006397AC0031001107239733        
S/G/Y/R/B/O NT_006397AC0040551108692453AFM248ZG94111.104112.621 AC004055
S/G/Y/R/B/O NT_006397AC0985861109222191        
S/G/Y/R/B/O NT_006397AC0608151110473751        
S/G/Y/R/B/O NT_006397AC0848401110524331        
S/G/Y/R/B/O NT_006397AC1068611110677493        
S/G/Y/R/B/O NT_006397AC0040451110725353        
S/G/Y/R/B/O NT_006397AC1081701111768863        
S/G/Y/R/B/O NT_006397AC0965641112250183AFMA153YH94111.104112.621 AC096564
S/G/Y/R/B/O NT_006397AC1147331113631231        


  NT_006397 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_006397AC0000161113800831        
S/G/Y/R/B/O NT_006397AF0957031113988463        
S/G/Y/R/B/O NT_006397AC0040591114495943        
S/G/Y/R/B/O NT_006397AP0020771114903271        
S/G/Y/R/B/O NT_006397AC0215241115031911        
S/G/Y/R/B/O NT_006397AC0925391115401521        
S/G/Y/R/B/O NT_006397AC0970671115566043        
S/G/Y/R/B/O NT_006397AC0055101116931043        
S/G/Y/R/B/O NT_006397AC0936461118595723        
S/G/Y/R/B/O NT_006397AC0842091118920533        
S/G/Y/R/B/O NT_006397AC1070711120420333        
S/G/Y/R/B/O NT_006397AC0974731122863793ACT3E03  4114.041 AC097473
S/G/Y/R/B/O NT_006397AC0734271123003053        
S/G/Y/R/B/O NT_006397AC0950661124554533        
S/G/Y/R/B/O NT_006397AC0047011126003573AFM263YH94113.204114.671 AC079099
S/G/Y/R/B/O NT_006397AC0040511126930263        
S/G/Y/R/B/O NT_006397 - MFD315  4104.750AP002333, AP002333
S/G/Y/R/B/O NT_006397 - GATA82D12  4104.750  
S/G/Y/R/B/O NT_006397 - AFM218XH8  4106.891AC105763, AC105763
S/G/Y/R/B/O NT_006397 - AFMB298YC5  4106.891AC116174, AC116174
S/G/Y/R/B/O NT_006397 - AFM291ZD1  4106.891AP001816, AP001816
S/G/Y/R/B/O NT_006397 - AFMA108ZC5  4107.951AC004052, AC004052
S/G/Y/R/B/O NT_006397 - AFMB286ZF9  4107.951AP002075, AP002075
S/G/Y/R/B/O NT_006397 - AFMA136XB5  4107.951AC074088, AC074088
S/G/Y/R/B/O NT_006397 - AFM265VA9  4107.951AC018797, AC018797, AC080124
S/G/Y/R/B/O NT_006397 - AFMA065WH1  4107.951AF224669, AF224669