Home    Genome Browser    BLAT Search    Help
  Chromosome 6 - Genetic Maps - Single Contig
 

Chromosome 6 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_007540
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007540AC067915729671001        
S/G/Y/R/B/O NT_007540AL049551729747273        
S/G/Y/R/B/O NT_007540AL356135730399643        
S/G/Y/R/B/O NT_007540AL049544731610493AFMA054ZH9681.60680.991 AL049544
S/G/Y/R/B/O NT_007540AL391644732122013        
S/G/Y/R/B/O NT_007540AL133459733417333AFM115XH10681.50680.991 AC068460
S/G/Y/R/B/O NT_007540AL355347733772803        
S/G/Y/R/B/O NT_007540AL590202734634783        
S/G/Y/R/B/O NT_007540AL360220735539223AFMA071TD1681.60680.451 AC067786, AL360220
S/G/Y/R/B/O NT_007540AL161440735749133        
S/G/Y/R/B/O NT_007540AL138882736565933        
S/G/Y/R/B/O NT_007540Z93021737615363AFM190YE1681.70680.991 Z93021
S/G/Y/R/B/O NT_007540AL589682738485903        
S/G/Y/R/B/O NT_007540AL451108739021003        
S/G/Y/R/B/O NT_007540AL355375739458393        
S/G/Y/R/B/O NT_007540AL589736741492403        
S/G/Y/R/B/O NT_007540AL121931742778863GATA51E06  680.451 AL121931
S/G/Y/R/B/O NT_007540AL590645743362823        
S/G/Y/R/B/O NT_007540AL590558744059313        
S/G/Y/R/B/O NT_007540AL359675745047593        
S/G/Y/R/B/O NT_007540AL450346746136603        
S/G/Y/R/B/O NT_007540AL590456747820273        
S/G/Y/R/B/O NT_007540AL121949748903653AFMB291ZB5680.80680.991AC067915, AC067915, AC073286, AL121949
S/G/Y/R/B/O NT_007540AL390854749620523        
S/G/Y/R/B/O NT_007540AL135905749884113        
S/G/Y/R/B/O NT_007540AL513043751474663AFMB351ZG9681.60680.991 AL513043
S/G/Y/R/B/O NT_007540AL445676751477313        
S/G/Y/R/B/O NT_007540AL050329751611393        
S/G/Y/R/B/O NT_007540AL445677752476933        
S/G/Y/R/B/O NT_007540AL354913753862913GATA64D02  680.451 AC022949
S/G/Y/R/B/O NT_007540AL590546754384583        
S/G/Y/R/B/O NT_007540AL590784755094202        
S/G/Y/R/B/O NT_007540AL603767756666393        
S/G/Y/R/B/O NT_007540AL078597757605163        
S/G/Y/R/B/O NT_007540AL357375758967253        
S/G/Y/R/B/O NT_007540AL356454760132923ATA22E07  680.451 AL356454
S/G/Y/R/B/O NT_007540AL355357761211903        
S/G/Y/R/B/O NT_007540AL450324762373513        
S/G/Y/R/B/O NT_007540AL137007763390973        
S/G/Y/R/B/O NT_007540AL109922764447763        
S/G/Y/R/B/O NT_007540AL450394765392613        
S/G/Y/R/B/O NT_007540AL353669765782493        
S/G/Y/R/B/O NT_007540AL133322766005943        
S/G/Y/R/B/O NT_007540AL365217767731183        
S/G/Y/R/B/O NT_007540AL589916768779753        
S/G/Y/R/B/O NT_007540AL132767769101503        
S/G/Y/R/B/O NT_007540AL109612769296473        
S/G/Y/R/B/O NT_007540AL353153770358203        
S/G/Y/R/B/O NT_007540AL450319771311503        
S/G/Y/R/B/O NT_007540AL451055772559303        


  NT_007540 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_007540AL391500773508523AFM155ZD2682.30681.521 AL391500
S/G/Y/R/B/O NT_007540AL513492774488263        
S/G/Y/R/B/O NT_007540AL049842775605033        
S/G/Y/R/B/O NT_007540AL132793776393403        
S/G/Y/R/B/O NT_007540AC002485777995923AFM254VB1682.40681.521 AC002485
S/G/Y/R/B/O NT_007540AL450164779073003        
S/G/Y/R/B/O NT_007540AL139334780367453GATA74F07  680.451 AL139334
S/G/Y/R/B/O NT_007540AL450336781341613        
S/G/Y/R/B/O NT_007540AL590673782595683        
S/G/Y/R/B/O NT_007540AL590995783827043        
S/G/Y/R/B/O NT_007540AL590678784940663        
S/G/Y/R/B/O NT_007540AL590874786419153        
S/G/Y/R/B/O NT_007540AL591004786902803ATA29B09  682.591 AC021214, AL591004, AL592074
S/G/Y/R/B/O NT_007540AL592081788158523        
S/G/Y/R/B/O NT_007540AL591605788178463        
S/G/Y/R/B/O NT_007540AL365503789869443AFM036YE1683.60682.591 AC016848, AL365503
S/G/Y/R/B/O NT_007540AL049860790569973        
S/G/Y/R/B/O NT_007540AL512368792544463AFM164WB12683.60682.591 AL512368
S/G/Y/R/B/O NT_007540AC025085793009831        
S/G/Y/R/B/O NT_007540AC073300793587231        
S/G/Y/R/B/O NT_007540AC108669794864831