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  Chromosome 6 - Genetic Maps - Single Contig
 

Chromosome 6 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_033944
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033944AC0684071184100001        
S/G/Y/R/B/O NT_033944AC0235561184134731        
S/G/Y/R/B/O NT_033944AC0169161184899051        
S/G/Y/R/B/O NT_033944AL3589521185391533        
S/G/Y/R/B/O NT_033944AL0220671185551663        
S/G/Y/R/B/O NT_033944AL1335091187322293        
S/G/Y/R/B/O NT_033944AL1389171187556793        
S/G/Y/R/B/O NT_033944AL3568591187903513        
S/G/Y/R/B/O NT_033944AL1099201188202143        
S/G/Y/R/B/O NT_033944AL3592921189639193        
S/G/Y/R/B/O NT_033944AL3900741190177243        
S/G/Y/R/B/O NT_033944AL0803141191556303        
S/G/Y/R/B/O NT_033944AL6455281193168853        
S/G/Y/R/B/O NT_033944AL3555861193266423        
S/G/Y/R/B/O NT_033944AL5915161195099483        
S/G/Y/R/B/O NT_033944AL5904891195922293        
S/G/Y/R/B/O NT_033944AL1219571197687993AFM115XH26114.806114.931 AC022244, AL121957
S/G/Y/R/B/O NT_033944AL6719341198732923        
S/G/Y/R/B/O NT_033944AL0968161199642643AFMB312YC16117.306117.291 AC073950, AL096816
S/G/Y/R/B/O NT_033944AL5125921200849513UT6132  6112.201 AC073950, AL512592
S/G/Y/R/B/O NT_033944AL5124901201206643        
S/G/Y/R/B/O NT_033944AL0245071201808333        
S/G/Y/R/B/O NT_033944AL1388291203331403        
S/G/Y/R/B/O NT_033944Z982001203404563AFM162XC36116.206116.261 Z98200
S/G/Y/R/B/O NT_033944AL0785961205217703AFMA309XH16117.306117.291 AL078596, AL450329
S/G/Y/R/B/O NT_033944Z987421205527083        
S/G/Y/R/B/O NT_033944AL3561211206575113        
S/G/Y/R/B/O NT_033944AL3537061207102563        
S/G/Y/R/B/O NT_033944AL1627211208148353        
S/G/Y/R/B/O NT_033944AL1391061208366323        
S/G/Y/R/B/O NT_033944AL3916461209204013ATA56D06  6118.081 AL391646
S/G/Y/R/B/O NT_033944AL3655091209555123        
S/G/Y/R/B/O NT_033944AL0968181210173123        
S/G/Y/R/B/O NT_033944Z951181210315213        
S/G/Y/R/B/O NT_033944AL4451891211659363        
S/G/Y/R/B/O NT_033944AL3902081213004023        
S/G/Y/R/B/O NT_033944AL3553051213698583        
S/G/Y/R/B/O NT_033944AL3597121215550123        
S/G/Y/R/B/O NT_033944AL3597111216112433        
S/G/Y/R/B/O NT_033944AL1099471217345282        
S/G/Y/R/B/O NT_033944AL1393911218633883        
S/G/Y/R/B/O NT_033944AL1217881218713003        
S/G/Y/R/B/O NT_033944AL1334721220062793        
S/G/Y/R/B/O NT_033944AL5123031220936133        
S/G/Y/R/B/O NT_033944AL5908251221980213        
S/G/Y/R/B/O NT_033944AL5910761222407213        
S/G/Y/R/B/O NT_033944AL5900091223321433        
S/G/Y/R/B/O NT_033944AL5905491224850893        
S/G/Y/R/B/O NT_033944AL6715181225077503        
S/G/Y/R/B/O NT_033944AL4450681225731453        


  NT_033944 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033944AL0503501226443153        
S/G/Y/R/B/O NT_033944AC0024641227761893        
S/G/Y/R/B/O NT_033944AL5124301229510243AFMB328WF16118.106118.081 AC073180, AL512430
S/G/Y/R/B/O NT_033944AL6039141230365243        
S/G/Y/R/B/O NT_033944Z844801230798213        
S/G/Y/R/B/O NT_033944AL3652061231992453        
S/G/Y/R/B/O NT_033944AL3575151233280753AFMA058ZB96118.106118.081 AL357515
S/G/Y/R/B/O NT_033944AL5909851234167583        
S/G/Y/R/B/O NT_033944AL3602271234168523        
S/G/Y/R/B/O NT_033944AL3589511235786903        
S/G/Y/R/B/O NT_033944AL5896431235843693        
S/G/Y/R/B/O NT_033944AL0803171235904433        
S/G/Y/R/B/O NT_033944AL5123251237256483        
S/G/Y/R/B/O NT_033944AL1363101237911943        
S/G/Y/R/B/O NT_033944AL0087301238309833        
S/G/Y/R/B/O NT_033944Z979891239527383AFM190YG56118.106118.641 Z97989
S/G/Y/R/B/O NT_033944Z979891240116483AFM224YB46118.706118.641 AC073580, Z97989
S/G/Y/R/B/O NT_033944AL1099161240723413        
S/G/Y/R/B/O NT_033944AL1580351242901253AFM067XH36120.406121.971 AC062038
S/G/Y/R/B/O NT_033944AL5122991243360723        
S/G/Y/R/B/O NT_033944Z992891244636663AFM211ZE56118.106118.641 Z99289
S/G/Y/R/B/O NT_033944AL5901061245813103        
S/G/Y/R/B/O NT_033944AL3652141245989843        
S/G/Y/R/B/O NT_033944AL3575141248913393GATA31  6118.641 AC046163, AL357514
S/G/Y/R/B/O NT_033944AL3575141249486213AFM260YC16119.606119.471 AL357514
S/G/Y/R/B/O NT_033944AL3589421249495213        
S/G/Y/R/B/O NT_033944AL5910511249946813        
S/G/Y/R/B/O NT_033944AL3600851251212963        
S/G/Y/R/B/O NT_033944AL3600151252801063        
S/G/Y/R/B/O NT_033944AL5906801254330783        
S/G/Y/R/B/O NT_033944AL0496951255387843AFM234XD86120.406120.311 AL049695
S/G/Y/R/B/O NT_033944AL1627201255568143        
S/G/Y/R/B/O NT_033944AL5896841256950303AFM102XF126120.406120.311 AL391275
S/G/Y/R/B/O NT_033944AL0213261257601213AFM200VH66120.406120.311 AL021326
S/G/Y/R/B/O NT_033944AL5131231258119913        
S/G/Y/R/B/O NT_033944AL3575191258822303        
S/G/Y/R/B/O NT_033944AL5903231260391513        
S/G/Y/R/B/O NT_033944AL6068401260782633        
S/G/Y/R/B/O NT_033944AL6719661261084413        
S/G/Y/R/B/O NT_033944AL1326601261687683AFM059XH86120.406120.311 AC021838
S/G/Y/R/B/O NT_033944AL6719671262233663        
S/G/Y/R/B/O NT_033944AL5903981262894313        
S/G/Y/R/B/O NT_033944AL3554981263794543AFM165XG96121.506121.141 AL355498
S/G/Y/R/B/O NT_033944AL5005241265293463        
S/G/Y/R/B/O NT_033944AL1364461265697913        
S/G/Y/R/B/O NT_033944AL0213271266787923        
S/G/Y/R/B/O NT_033944AL1388301267872263        
S/G/Y/R/B/O NT_033944AL5906381269290503        
S/G/Y/R/B/O NT_033944AL5909641269847573        
S/G/Y/R/B/O NT_033944AL5905501271833013        


  NT_033944 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033944AL4493031272417073        
S/G/Y/R/B/O NT_033944AL3569591272876113        
S/G/Y/R/B/O NT_033944Z925431273897313AFM301ZB16120.406120.311 AC011159, AC021765, Z92543
S/G/Y/R/B/O NT_033944AL5124891274585963        
S/G/Y/R/B/O NT_033944Z844751275393423        
S/G/Y/R/B/O NT_033944AL3536241276302593        
S/G/Y/R/B/O NT_033944AL6068451276535833        
S/G/Y/R/B/O NT_033944AL6459911277722833        
S/G/Y/R/B/O NT_033944Z987531277926443        
S/G/Y/R/B/O NT_033944AL5124071279021523        
S/G/Y/R/B/O NT_033944AL0495491280185093AFM225YA116121.506121.971 AL049549
S/G/Y/R/B/O NT_033944AL5900261280612633        
S/G/Y/R/B/O NT_033944AL3601551280724973        
S/G/Y/R/B/O NT_033944AL0214511281803053        
S/G/Y/R/B/O NT_033944AL3571411282674113        
S/G/Y/R/B/O NT_033944AL1219631283924953        
S/G/Y/R/B/O NT_033944AL1219451284999493        
S/G/Y/R/B/O NT_033944AL0503311285061923        
S/G/Y/R/B/O NT_033944AL5905421286244193        
S/G/Y/R/B/O NT_033944Z844881286676643        
S/G/Y/R/B/O NT_033944AL4452241288279423        
S/G/Y/R/B/O NT_033944AL1219531288375593        
S/G/Y/R/B/O NT_033944AL1327951289397963        
S/G/Y/R/B/O NT_033944AL3547161290751133        
S/G/Y/R/B/O NT_033944AL3552721291654453        
S/G/Y/R/B/O NT_033944AL3553581292708083        
S/G/Y/R/B/O NT_033944AL5903701294125333        
S/G/Y/R/B/O NT_033944AL5130101294436953        
S/G/Y/R/B/O NT_033944AL3549451294614103        
S/G/Y/R/B/O NT_033944Z988801295820553        
S/G/Y/R/B/O NT_033944AL1326711296902153        
S/G/Y/R/B/O NT_033944Z859991298211693        
S/G/Y/R/B/O NT_033944AL5899391299218773        
S/G/Y/R/B/O NT_033944AL5903031299839743        
S/G/Y/R/B/O NT_033944Z981721300367393        
S/G/Y/R/B/O NT_033944AL5906341301369703        
S/G/Y/R/B/O NT_033944AL1364781302152813AFM112YC16118.806121.971 AL357511
S/G/Y/R/B/O NT_033944AL4504051302794133        
S/G/Y/R/B/O NT_033944AL5906211303496673        
S/G/Y/R/B/O NT_033944Z953261304650783        
S/G/Y/R/B/O NT_033944AL4491961305489103        
S/G/Y/R/B/O NT_033944AL1333791306556653AFM260ZB56122.006121.971 AL355308
S/G/Y/R/B/O NT_033944AL5906151306936103        
S/G/Y/R/B/O NT_033944AL5899931307129563        
S/G/Y/R/B/O NT_033944Z994961309483133GATA22F05  6121.971 AL355356
S/G/Y/R/B/O NT_033944AL3900691309573923        
S/G/Y/R/B/O NT_033944AL5131311310231033        
S/G/Y/R/B/O NT_033944AL1328741311311743        
S/G/Y/R/B/O NT_033944AL3652751312437123        
S/G/Y/R/B/O NT_033944AL1370091313766253AFM238ZD46122.006121.971 AL355502


  NT_033944 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033944AL0227221315009623AFM198ZE16122.006121.971 AL022722
S/G/Y/R/B/O NT_033944AL0227221315189373AFMA055ZG96121.506121.971 AL022722
S/G/Y/R/B/O NT_033944AL1388861315653883        
S/G/Y/R/B/O NT_033944AL0786001315654213        
S/G/Y/R/B/O NT_033944AL3602151316882823        
S/G/Y/R/B/O NT_033944AL5899201317947643        
S/G/Y/R/B/O NT_033944AL4491651318124923        
S/G/Y/R/B/O NT_033944AL0802771319889403AFM114XD126122.006121.971 AL080277, AL359768
S/G/Y/R/B/O NT_033944AL4491631320147723        
S/G/Y/R/B/O NT_033944AL5905451320279773        
S/G/Y/R/B/O NT_033944AL1623821321516543UT526  6121.971 AL162382
S/G/Y/R/B/O NT_033944AL1581351321562803        
S/G/Y/R/B/O NT_033944AL0496131322210343        
S/G/Y/R/B/O NT_033944AL1363151323409343        
S/G/Y/R/B/O NT_033944AL1391051324581613AFM207XB66122.006121.971 AC022218, AL139105
S/G/Y/R/B/O NT_033944AL6068301324982833        
S/G/Y/R/B/O NT_033944AL6039041326169823AFMB341ZH56122.006121.971 AC022218, AC023753
S/G/Y/R/B/O NT_033944AL5907311326631353        
S/G/Y/R/B/O NT_033944AL0968541328587183AFMB019WD96122.406122.511 AL096854
S/G/Y/R/B/O NT_033944AL3573321329015913        
S/G/Y/R/B/O NT_033944AL3575131329754823        
S/G/Y/R/B/O NT_033944AL5124461331530273        
S/G/Y/R/B/O NT_033944AC0648781332563863GATA22A07  6122.511 AC064878
S/G/Y/R/B/O NT_033944AL0355931333491183        
S/G/Y/R/B/O NT_033944AL3655081333747333        
S/G/Y/R/B/O NT_033944AL5902251334709483        
S/G/Y/R/B/O NT_033944AL5899101335359623        
S/G/Y/R/B/O NT_033944AL1390981336024533        
S/G/Y/R/B/O NT_033944AL1387291337338543        
S/G/Y/R/B/O NT_033944AL5920791338093363        
S/G/Y/R/B/O NT_033944AL6038651338843833        
S/G/Y/R/B/O NT_033944AL5914721339548703        
S/G/Y/R/B/O NT_033944Z939311340820483AFMA074WF56122.506122.511 AC074368, Z93931
S/G/Y/R/B/O NT_033944AL6039161341796693        
S/G/Y/R/B/O NT_033944AL5962191341948383        
S/G/Y/R/B/O NT_033944AL5123231342779891        
S/G/Y/R/B/O NT_033944AL5915991344810323        
S/G/Y/R/B/O NT_033944AL1218461345252063        
S/G/Y/R/B/O NT_033944AL3581121345662583        
S/G/Y/R/B/O NT_033944AL1219541346573193        
S/G/Y/R/B/O NT_033944Z991291346714043        
S/G/Y/R/B/O NT_033944AL5134811348315073        
S/G/Y/R/B/O NT_033944AL5122831348579302        
S/G/Y/R/B/O NT_033944AL6458111350115073        
S/G/Y/R/B/O NT_033944AC0109891350726721        
S/G/Y/R/B/O NT_033944AC0734601350770861        
S/G/Y/R/B/O NT_033944AC0341351350984791        
S/G/Y/R/B/O NT_033944AC0249211351264881        
S/G/Y/R/B/O NT_033944 - ATA56B03  6121.970AL136478, AL136478, AL357511