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  Chromosome 6 - Genetic Maps - Single Contig
 

Chromosome 6 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033125 NT_033164 NT_033126 NT_033128 NT_033144 NT_033156 NT_033142 NT_033120
NT_033135 NT_033151 NT_033162 NT_033163 NT_033143 NT_033124 NT_033129 NT_033138
NT_033159 NT_026313 NT_033155 NT_033173 NT_033140 NT_033153 NT_023442 NT_033146
NT_033136 NT_033149 NT_033154 NT_033160 NT_033134 NT_029317 NT_007592 NT_033137
NT_033139 NT_033147 NT_033158 NT_033161 NT_033145 NT_033141 NT_033123 NT_033130
NT_033127 NT_033122 NT_033152 NT_033121 NT_033148 NT_033171 NT_033132 NT_033943
NT_033172 NT_033948 NT_033131 NT_033946 NT_007540 NT_023463 NT_007158 NT_029990
NT_023399 NT_033133 NT_007299 NT_019424 NT_007563 NT_033944 NT_033947 NT_030710
NT_025741 NT_027046 NT_023451 NT_029991 NT_007422 NT_007302 NT_007627 NT_007583


  NT_025741
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025741AL0354651404834333        
S/G/Y/R/B/O NT_025741AL5900061405320673        
S/G/Y/R/B/O NT_025741AL4510731405746563        
S/G/Y/R/B/O NT_025741AL0355941406957643        
S/G/Y/R/B/O NT_025741AL3576211408638503ATA23C05  6125.711 AL357621
S/G/Y/R/B/O NT_025741AL0343491409823453AFM198WG116126.506125.711 AL034349
S/G/Y/R/B/O NT_025741AL0343491410030583AFMA051XH16126.506126.521 AL034349
S/G/Y/R/B/O NT_025741AL3598271410099613        
S/G/Y/R/B/O NT_025741AL1370061410125013        
S/G/Y/R/B/O NT_025741AL0803151410485143        
S/G/Y/R/B/O NT_025741AL3598241412073943        
S/G/Y/R/B/O NT_025741AL5899911412340283        
S/G/Y/R/B/O NT_025741AL4454391412531523        
S/G/Y/R/B/O NT_025741AL5899271414200773        
S/G/Y/R/B/O NT_025741AL5838531414414373        
S/G/Y/R/B/O NT_025741AL6699841416106253        
S/G/Y/R/B/O NT_025741AL5906131417025183        
S/G/Y/R/B/O NT_025741AL5135271418240043GATA161A04  6124.111 AL513527
S/G/Y/R/B/O NT_025741AL3561241419294661        
S/G/Y/R/B/O NT_025741AL4503101421153763AFMB076WF16129.106128.931 AL450310
S/G/Y/R/B/O NT_025741Z973521421605483        
S/G/Y/R/B/O NT_025741AL4510461422528673        
S/G/Y/R/B/O NT_025741AL3565791424854403AFM109XA96129.106128.931 AL356579
S/G/Y/R/B/O NT_025741AL5838461425311753        
S/G/Y/R/B/O NT_025741AL3555811425851863        
S/G/Y/R/B/O NT_025741AL1219471427255323        
S/G/Y/R/B/O NT_025741AL4503301428644293        
S/G/Y/R/B/O NT_025741AL1371851428791663        
S/G/Y/R/B/O NT_025741AL1372511429205693        
S/G/Y/R/B/O NT_025741AL3572741431534043GATA23F08  6128.931 AC025996, AC034140, AL357274
S/G/Y/R/B/O NT_025741AL5838031431762883        
S/G/Y/R/B/O NT_025741AL5900131432086573        
S/G/Y/R/B/O NT_025741AL1099381432301753        
S/G/Y/R/B/O NT_025741AL5900141433325823        
S/G/Y/R/B/O NT_025741AL3589431433744341        
S/G/Y/R/B/O NT_025741AL3574961435052333AFMA230VC96129.806129.461 AL357496
S/G/Y/R/B/O NT_025741AL1372221435648923        
S/G/Y/R/B/O NT_025741AL1361101437303363AFM135XH26129.806129.461 AL136110
S/G/Y/R/B/O NT_025741AL1370631437465953        
S/G/Y/R/B/O NT_025741AL0495461438982983AFM059YD66129.806130.001 AL049546
S/G/Y/R/B/O NT_025741AL4452491439708103UT5174  6128.931 AC021167, AL445249
S/G/Y/R/B/O NT_025741AL1215751440226843AFM310WG16130.306130.001 AC021167, AL121575
S/G/Y/R/B/O NT_025741AL1359041441309393        
S/G/Y/R/B/O NT_025741AL1573771441899643        
S/G/Y/R/B/O NT_025741AL1398051442700793AFMB338ZF96131.406131.071 AL139805
S/G/Y/R/B/O NT_025741AL1173781442797973        
S/G/Y/R/B/O NT_025741AL3548661443705873        
S/G/Y/R/B/O NT_025741AL1333461444318353        
S/G/Y/R/B/O NT_025741AL0214081444846553        
S/G/Y/R/B/O NT_025741AL1173731446732423AFMA128YD96132.706131.071 AL117373


  NT_025741 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025741AL0235781447772703AFM210VF86131.506131.071 AL023578
S/G/Y/R/B/O NT_025741AL3570341447938963        
S/G/Y/R/B/O NT_025741AL5896911449214993        
S/G/Y/R/B/O NT_025741AL5135241449663413        
S/G/Y/R/B/O NT_025741AL0328211451072693        
S/G/Y/R/B/O NT_025741AL1377831453171373MFD47  6133.181 AC021327, AL137783
S/G/Y/R/B/O NT_025741AL1391021453595273        
S/G/Y/R/B/O NT_025741AL5964431454579173        
S/G/Y/R/B/O NT_025741AL5911151454882223        
S/G/Y/R/B/O NT_025741AL3567741455779853        
S/G/Y/R/B/O NT_025741AL1219591456775483AFMA052VF16135.506133.181 AL121959
S/G/Y/R/B/O NT_025741AL3562421457485943        
S/G/Y/R/B/O NT_025741AL0244971458144273        
S/G/Y/R/B/O NT_025741AL4502701459550093        
S/G/Y/R/B/O NT_025741AL4503051460417943        
S/G/Y/R/B/O NT_025741AL0785861461877433GATA23B12  6133.181 AC024539, AL078586
S/G/Y/R/B/O NT_025741AL0785861461940413AFMA102YA56135.506133.281 AC024539, AL078586
S/G/Y/R/B/O NT_025741AL1370111462197333        
S/G/Y/R/B/O NT_025741AL3561091463287213        
S/G/Y/R/B/O NT_025741AL0356991463538073        
S/G/Y/R/B/O NT_025741AL4493631465345323AFM095WF116136.406135.471 AL449363
S/G/Y/R/B/O NT_025741AL1358391465997203        
S/G/Y/R/B/O NT_025741AL3558811467132933        
S/G/Y/R/B/O NT_025741Z844861467785873GATA119B06  6135.471 Z84486
S/G/Y/R/B/O NT_025741Z844861467860863AFM127XB26136.406135.471 Z84486
S/G/Y/R/B/O NT_025741AL0968151468424103        
S/G/Y/R/B/O NT_025741AL0785901468741693        
S/G/Y/R/B/O NT_025741AL5961881470690913        
S/G/Y/R/B/O NT_025741AL1219701471367663        
S/G/Y/R/B/O NT_025741AL1219431472034733        
S/G/Y/R/B/O NT_025741AL0219391472471543        
S/G/Y/R/B/O NT_025741AL4451901473918133        
S/G/Y/R/B/O NT_025741AL3535961474569623        
S/G/Y/R/B/O NT_025741AL0236931475651913        
S/G/Y/R/B/O NT_025741AL0495521477533783        
S/G/Y/R/B/O NT_025741AL1335441478521063        
S/G/Y/R/B/O NT_025741AL5124261479640913        
S/G/Y/R/B/O NT_025741AL0356041480192153        
S/G/Y/R/B/O NT_025741AL1333191481586303        
S/G/Y/R/B/O NT_025741AL3601781484134853AFMB290ZG56138.206136.971 AL360178, U54776
S/G/Y/R/B/O NT_025741AL5122901484464793AFM203ZA96138.206136.971 AL512290
S/G/Y/R/B/O NT_025741AL1388281485538713        
S/G/Y/R/B/O NT_025741AL1217131486953113        
S/G/Y/R/B/O NT_025741AL0232841487627823        
S/G/Y/R/B/O NT_025741AL1335111489303733        
S/G/Y/R/B/O NT_025741AL0245081489818623        
S/G/Y/R/B/O NT_025741AL1219331491365503        
S/G/Y/R/B/O NT_025741AL3570821493219173        
S/G/Y/R/B/O NT_025741AL3652231494333503GATA32B03  6137.741 AL365223
S/G/Y/R/B/O NT_025741AL1359021494387663        


  NT_025741 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025741AL0503371495908943        
S/G/Y/R/B/O NT_025741AL3654371497046053        
S/G/Y/R/B/O NT_025741AL3548561497436913        
S/G/Y/R/B/O NT_025741AL0235801498567373        
S/G/Y/R/B/O NT_025741AL3547551500036923        
S/G/Y/R/B/O NT_025741AL3562341500522483        
S/G/Y/R/B/O NT_025741AL3570601501673723        
S/G/Y/R/B/O NT_025741AL5914681503494813        
S/G/Y/R/B/O NT_025741AL5913971504027423        
S/G/Y/R/B/O NT_025741AL0235821504833883        
S/G/Y/R/B/O NT_025741AL3553621505528413AFMA301ZF16144.406143.401 AL355362
S/G/Y/R/B/O NT_025741AL0314331505715733        
S/G/Y/R/B/O NT_025741AL3912401507007003        
S/G/Y/R/B/O NT_025741AL0310031507064923        
S/G/Y/R/B/O NT_025741AL3916691508657363        
S/G/Y/R/B/O NT_025741AL5913751509440523        
S/G/Y/R/B/O NT_025741AL5906111510260683        
S/G/Y/R/B/O NT_025741AL5906171511849463AFMA223WA96142.206141.151 AC034272, AL590617
S/G/Y/R/B/O NT_025741AL1218341512265553        
S/G/Y/R/B/O NT_025741AL5910331514027153        
S/G/Y/R/B/O NT_025741AL5903081514203653        
S/G/Y/R/B/O NT_025741AL0317721515491993AFMA059YG16142.206141.151 AL031772
S/G/Y/R/B/O NT_025741AL1588501516450273        
S/G/Y/R/B/O NT_025741AL5924341517362783        
S/G/Y/R/B/O NT_025741AL5924291517921673MFD118  6142.861 AL592429
S/G/Y/R/B/O NT_025741AL5924291518444863AFM190YG16144.406142.861 AC104267
S/G/Y/R/B/O NT_025741AL0344511519706033AFMA123XH16144.406143.401 AC006571
S/G/Y/R/B/O NT_025741AL3902051521395323AFM319XC96144.406143.401 AL390205
S/G/Y/R/B/O NT_025741AL3902051521457193AFM254XH16144.406143.401 AL390205
S/G/Y/R/B/O NT_025741AL6068281522213823        
S/G/Y/R/B/O NT_025741AL5132161522532693        
S/G/Y/R/B/O NT_025741AL0503381523156203AFM360TH96144.406143.401 AL050338
S/G/Y/R/B/O NT_025741AL3571461524234013        
S/G/Y/R/B/O NT_025741AL1387371525057953        
S/G/Y/R/B/O NT_025741AL0224771525757203        
S/G/Y/R/B/O NT_025741AL5899041526576933        
S/G/Y/R/B/O NT_025741AL0317711527253893        
S/G/Y/R/B/O NT_025741AL3591731528128413        
S/G/Y/R/B/O NT_025741AL3561371530867603UT523  6143.401 AL356137
S/G/Y/R/B/O NT_025741AL5914001531163823        
S/G/Y/R/B/O NT_025741AL0354461533144953UT448  6146.061 AC068949, AL035446
S/G/Y/R/B/O NT_025741AL3570841533878443AFM262XE96145.506144.461 AL357084
S/G/Y/R/B/O NT_025741AL3570801535124063AFM301YA56144.406143.401 AL357080
S/G/Y/R/B/O NT_025741AL5961861535645883        
S/G/Y/R/B/O NT_025741AL6037571536240193        
S/G/Y/R/B/O NT_025741AL3555961537325393        
S/G/Y/R/B/O NT_025741AL5904861539113173        
S/G/Y/R/B/O NT_025741AL3567941539877133        
S/G/Y/R/B/O NT_025741AL5900291541501523        
S/G/Y/R/B/O NT_025741AL0498231542081633AFMB330YD56144.406143.401 AL049823


  NT_025741 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025741AL0498231542335093AFM267ZG56144.406143.401 AL049823
S/G/Y/R/B/O NT_025741AL5123651543116033        
S/G/Y/R/B/O NT_025741AL3561271543120541        
S/G/Y/R/B/O NT_025741AL5896741544510403        
S/G/Y/R/B/O NT_025741AL0335221545617043        
S/G/Y/R/B/O NT_025741AL3600071546967663        
S/G/Y/R/B/O NT_025741AL0333771547866773        
S/G/Y/R/B/O NT_025741AL1619041549216673        
S/G/Y/R/B/O NT_025741AL3593131549873923        
S/G/Y/R/B/O NT_025741AL3553371550620273UT2427  6143.401 AC011723, AC036235, AL355337
S/G/Y/R/B/O NT_025741AL1361221551374983        
S/G/Y/R/B/O NT_025741AL0235841552027573UT525  6142.861 AL023584
S/G/Y/R/B/O NT_025741AL0235841552091503UT7700  6143.401 AF153836, AL023584
S/G/Y/R/B/O NT_025741AL3553071553361653        
S/G/Y/R/B/O NT_025741AL3553041553767643        
S/G/Y/R/B/O NT_025741AL0235811554532453        
S/G/Y/R/B/O NT_025741AL3917261556485303AFM200WE116145.406144.461 AC011888, AL391726
S/G/Y/R/B/O NT_025741AL4503351557120213        
S/G/Y/R/B/O NT_025741AL1361161557194103        
S/G/Y/R/B/O NT_025741AL5900301558201253        
S/G/Y/R/B/O NT_025741AL0313201558778763AFM163XA16145.506144.461 AC009472
S/G/Y/R/B/O NT_025741AL3571171560132083AFMA062TB16145.506144.461 AC023219, AL357117
S/G/Y/R/B/O NT_025741AL3602281561058933        
S/G/Y/R/B/O NT_025741AL0785931561401353        
S/G/Y/R/B/O NT_025741AL0498441562705683        
S/G/Y/R/B/O NT_025741AL1097551564078553        
S/G/Y/R/B/O NT_025741AL0313901564974243        
S/G/Y/R/B/O NT_025741AL5123541565991703        
S/G/Y/R/B/O NT_025741AL1359171566038473        
S/G/Y/R/B/O NT_025741AL0244741567255773ATA1F08  6144.461 AL024474
S/G/Y/R/B/O NT_025741AL5907041568031423        
S/G/Y/R/B/O NT_025741AL5904881568622393        
S/G/Y/R/B/O NT_025741AL5134751569897183        
S/G/Y/R/B/O NT_025741AL5131841571794703        
S/G/Y/R/B/O NT_025741AL3571491572608313        
S/G/Y/R/B/O NT_025741AL3573761574621303        
S/G/Y/R/B/O NT_025741AL1371221575074163        
S/G/Y/R/B/O NT_025741AL0503341575658003        
S/G/Y/R/B/O NT_025741AL0232831576380063        
S/G/Y/R/B/O NT_025741AL3567391577568103        
S/G/Y/R/B/O NT_025741AL3918181578552583        
S/G/Y/R/B/O NT_025741AL0311191579302023        
S/G/Y/R/B/O NT_025741AL3651931580459373        
S/G/Y/R/B/O NT_025741AL0238061581490723AFMA061ZF96147.006146.061 AL023806
S/G/Y/R/B/O NT_025741AL3565991582475843        
S/G/Y/R/B/O NT_025741AL4511451583557833        
S/G/Y/R/B/O NT_025741AL0968671585019253UT7693  6146.061 AL096867, AL353632
S/G/Y/R/B/O NT_025741AL5924231585783293        
S/G/Y/R/B/O NT_025741AL0317691586659353GATA29B05  6146.061 AL031769
S/G/Y/R/B/O NT_025741AL0356981588858293AFM059XB86146.906146.061 AL035698


  NT_025741 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_025741AL1335391589841783AFMA052ZH56147.706146.061 AL133539
S/G/Y/R/B/O NT_025741AL1361651590075653        
S/G/Y/R/B/O NT_025741AL3595471590242163        
S/G/Y/R/B/O NT_025741AL1581991591533613        
S/G/Y/R/B/O NT_025741AL1389161592193963        
S/G/Y/R/B/O NT_025741AL5123451594024113        
S/G/Y/R/B/O NT_025741AL5126361594510953        
S/G/Y/R/B/O NT_025741AL3564151596112503        
S/G/Y/R/B/O NT_025741AL5907091597521493        
S/G/Y/R/B/O NT_025741AL3553651597906783        
S/G/Y/R/B/O NT_025741AL3548801599533283        
S/G/Y/R/B/O NT_025741AL0343501600983433GATA184A08  6146.061 AL034350, AP001975
S/G/Y/R/B/O NT_025741AL5899061601021633        
S/G/Y/R/B/O NT_025741AL3652711601433433        
S/G/Y/R/B/O NT_025741AL0335041602593223        
S/G/Y/R/B/O NT_025741AL4451231603950373        
S/G/Y/R/B/O NT_025741AL5130091605156463        
S/G/Y/R/B/O NT_025741AL3593821605824333AFM120XG96147.706146.601 AL359382
S/G/Y/R/B/O NT_025741AL5131641608210413AFM276XF16148.206147.131 AL513164
S/G/Y/R/B/O NT_025741AL5899401608518693        
S/G/Y/R/B/O NT_025741AL3575671608730303        
S/G/Y/R/B/O NT_025741AL0333781609635553AFMB314YD56148.206147.131 AC006599, AL033378
S/G/Y/R/B/O NT_025741AL1361341610252153        
S/G/Y/R/B/O NT_025741 - MFD91  6130.000