Chromosome 1 - BAC End Pairs

Chromosome 1 - BAC End Pairs - Single Contig

Description of this page

Main Reports Page

Main Assembly Page

Main BAC End Pairs Page

Whole Chromosome

Single Contigs

Line color code:

White: lists number of confirming clone bridges for this accession
Blue: clone bridges two adjacent contigs
Green: clone bridges close contigs
Pink: multiple clones bridge distant regions on same chromosome
Red: multiple clones bridge regions on different chromosomes

NT_077402	NT_077911	NT_077912	NT_034471	NT_077913	NT_077914	NT_077915	NT_077916
NT_004350	NT_004321	NT_004547	NT_077917	NT_077918	NT_077919	NT_028054	NT_021937
NT_077382	NT_004873	NT_077920	NT_030584	NT_077921	NT_004610	NT_004391	NT_077383
NT_077922	NT_077384	NT_037485	NT_077385	NT_004538	NT_077923	NT_004511	NT_077386
NT_004852	NT_032977	NT_004464	NT_077924	NT_034383	NT_077925	NT_077926	NT_004483
NT_037488	NT_004902	NT_026943	NT_004686	NT_077927	NT_021979	NT_034389	NT_077928
NT_028050	NT_030567	NT_029860	NT_077929	NT_019273	NT_004754	NT_077387	NT_022052
NT_022071	NT_077930	NT_077931	NT_077932	NT_077933	NT_004434	NT_077934	NT_034398
NT_034400	NT_077935	NT_077936	NT_034401	NT_034403	NT_032962	NT_004668	NT_004487
NT_004671	NT_034410	NT_077389	NT_021877	NT_077937	NT_021953	NT_077938	NT_077939
NT_077940	NT_004525	NT_004559	NT_031728	NT_021973	NT_004433	NT_030561	NT_004836
NT_004536	NT_077941	NT_031730	NT_077390	NT_077942	NT_032968

NT_004754

Links	Contig1	Acc1	Start1	Phs	BAC End Acc1	Or1	Chr2	Contig2	Acc2	Start2	Phs	BAC End Acc2	Or2	Clone
S/G/Y/R/B/O	NT_004754	AL592436	115232168	3										8 confirm
S/G/Y/R/B/O	NT_004754	AL592436	115232328	3	AQ439705	-1	chr1	NT_019273	AL512638	114992123	3	AQ614325	1	RP11-702H21
S/G/Y/R/B/O	NT_004754	AL592436	115232205	3	AQ666145	-1	chr1	NT_019273	AL512638	115022236	3	AQ711407	1	RP11-936B20
S/G/Y/R/B/O	NT_004754	AL592436	115265544	3	AQ549174	-1	chr1	NT_019273	AL512638	115043639	3	AQ549173	1	RP11-431N14
S/G/Y/R/B/O	NT_004754	AL592436	115265547	3	AQ488142	-1	chr1	NT_019273	AL512638	115045471	3	AQ488143	1	RP11-266E3
S/G/Y/R/B/O	NT_004754	AL592436	115265583	3	AQ489047	-1	chr1	NT_019273	AL512638	115045477	3	AQ489050	1	RP11-266K17
S/G/Y/R/B/O	NT_004754	AL592436	115281576	3	AQ619706	-1	chr1	NT_019273	AL512638	115063896	3	AQ451681	1	RP11-761I14
S/G/Y/R/B/O	NT_004754	AL592436	115275809	3	AQ116425	-1	chr1	NT_019273	AL512638	115094153	3	AQ116424	1	CTA-923C6
S/G/Y/R/B/O	NT_004754	AL592436	115262460	3	AQ016846	-1	chr1	NT_019273	AL512638	115106735	3	AQ016843	1	CTD-2309P6
S/G/Y/R/B/O	NT_004754	AL450389	115328950	3										12 confirm
S/G/Y/R/B/O	NT_004754	AL450389	115374900	3	AQ218277	-1	chr1	NT_019273	AL512638	115127686	3	AQ220583	1	CTD-3245G6
S/G/Y/R/B/O	NT_004754	AL450389	115419505	3	AQ263823	-1	chr1	NT_019273	AL157950	115162902	3	AQ263822	1	CTD-2510O6
S/G/Y/R/B/O	NT_004754	AL449264	115428573	3										21 confirm
S/G/Y/R/B/O	NT_004754	AL357137	115588502	3										16 confirm
S/G/Y/R/B/O	NT_004754	AL365318	115686770	3										14 confirm
S/G/Y/R/B/O	NT_004754	AL121982	115786345	3										16 confirm
S/G/Y/R/B/O	NT_004754	AL831782	115889125	3										2 confirm
S/G/Y/R/B/O	NT_004754	AL355538	115928713	3										18 confirm
S/G/Y/R/B/O	NT_004754	AL136376	116053764	3										9 confirm
S/G/Y/R/B/O	NT_004754	AL136376	116119306	3	AQ565926	1	chr2	NT_034508	AC027612	91400808	3	AQ623833	1	RP11-894O13
S/G/Y/R/B/O	NT_004754	AL136376	116109600	3	B68337	1	chr2	NT_034508	AC027612	91423138	3	AQ228501	1	CTD-2023F8
S/G/Y/R/B/O	NT_004754	AL390066	116122772	3										12 confirm
S/G/Y/R/B/O	NT_004754	AL390066	116173927	3	AQ197037	1	chr2	NT_034508	AC027612	91415920	3	AQ197035	1	CTD-2380A2
S/G/Y/R/B/O	NT_004754	AL355794	116224383	3										11 confirm
S/G/Y/R/B/O	NT_004754	AL355794	116298981	3	AQ197112	1	chr2	NT_034508	AC116050	91286443	3	AQ197113	1	CTD-2380C4
S/G/Y/R/B/O	NT_004754	AL356748	116312767	3										7 confirm
S/G/Y/R/B/O	NT_004754	AL135798	116410226	3										11 confirm
S/G/Y/R/B/O	NT_004754	AL135798	116476802	3	AQ402931	-1	chr2	NT_034508	AC027612	91400341	3	AQ402632	-1	RP11-642K14
S/G/Y/R/B/O	NT_004754	AL157904	116513335	3										14 confirm
S/G/Y/R/B/O	NT_004754	AL445231	116628469	3										13 confirm
S/G/Y/R/B/O	NT_004754	AL139248	116753316	3										0 confirm
S/G/Y/R/B/O	NT_004754	AL391476	116755310	3										16 confirm
S/G/Y/R/B/O	NT_004754	AL365264	116924908	3										1 confirm
S/G/Y/R/B/O	NT_004754	AL360298	116941473	3										14 confirm
S/G/Y/R/B/O	NT_004754	AL358072	117049208	3										18 confirm
S/G/Y/R/B/O	NT_004754	AL157902	117178130	3										21 confirm
S/G/Y/R/B/O	NT_004754	AL365331	117292527	3										12 confirm
S/G/Y/R/B/O	NT_004754	AL390877	117350848	3										16 confirm
S/G/Y/R/B/O	NT_004754	AL122007	117496481	3										14 confirm
S/G/Y/R/B/O	NT_004754	AL121993	117566348	3										11 confirm
S/G/Y/R/B/O	NT_004754	AL139345	117664310	3										12 confirm
S/G/Y/R/B/O	NT_004754	AL513191	117722173	3										17 confirm
S/G/Y/R/B/O	NT_004754	AL391557	117875903	3										14 confirm
S/G/Y/R/B/O	NT_004754	AL512823	118006518	3										3 confirm
S/G/Y/R/B/O	NT_004754	AL122006	118031369	3										17 confirm
S/G/Y/R/B/O	NT_004754	AL390117	118182660	3										17 confirm
S/G/Y/R/B/O	NT_004754	AL606843	118281820	3										20 confirm
S/G/Y/R/B/O	NT_004754	AL139148	118375848	3										11 confirm
S/G/Y/R/B/O	NT_004754	AL845532	118466362	3										9 confirm
S/G/Y/R/B/O	NT_004754	AL357045	118490194	3										22 confirm

NT_004754 (cont)

Links	Contig1	Acc1	Start1	Phs	BAC End Acc1	Or1	Chr2	Contig2	Acc2	Start2	Phs	BAC End Acc2	Or2	Clone
S/G/Y/R/B/O	NT_004754	AL139420	118629471	3										18 confirm
S/G/Y/R/B/O	NT_004754	AL359823	118751493	3										9 confirm
S/G/Y/R/B/O	NT_004754	AL590288	118826177	3										0 confirm
S/G/Y/R/B/O	NT_004754	AL359915	118846967	3										15 confirm
S/G/Y/R/B/O	NT_004754	AL139346	119004025	3										12 confirm
S/G/Y/R/B/O	NT_004754	AL359553	119065591	3										22 confirm
S/G/Y/R/B/O	NT_004754	AL121995	119163845	3										17 confirm
S/G/Y/R/B/O	NT_004754	AL109966	119249111	3										16 confirm
S/G/Y/R/B/O	NT_004754	AL139251	119361627	3										9 confirm
S/G/Y/R/B/O	NT_004754	AL589734	119414462	3										11 confirm
S/G/Y/R/B/O	NT_004754	AL359752	119480244	3										21 confirm
S/G/Y/R/B/O	NT_004754	AL359752	119505170	3	AQ580447	1	chr1	NT_004434	AL592307	143015644	3	AQ628773	1	RP11-79A8
S/G/Y/R/B/O	NT_004754	AL359752	119559822	3	AQ016959	1	chr1	NT_004434	AL592307	142954252	3	AQ016962	1	CTD-2308H19
S/G/Y/R/B/O	NT_004754	AL359752	119571230	3	AQ023110	-1	chr1	NT_004434	AL359758	142900895	3	AQ067968	1	CTD-2182D13
S/G/Y/R/B/O	NT_004754	AL359752	119584587	3	AQ429638	1	chr1	NT_004434	AL592307	142930622	3	AQ429640	1	CTD-2574B15
S/G/Y/R/B/O	NT_004754	AL512503	119618099	3										17 confirm
S/G/Y/R/B/O	NT_004754	AL512503	119631577	3	AQ349105	1	chr1	NT_004434	AL049715	142903693	3	AQ349107	1	RP11-125P23
S/G/Y/R/B/O	NT_004754	AL512503	119636952	3	AQ489886	1	chr1	NT_004434	AL592307	142918653	3	AQ489887	1	RP11-247L5
S/G/Y/R/B/O	NT_004754	AL512503	119647000	3	AQ780586	1	chr1	NT_004434	AL359758	142846464	3	AQ781192	1	CTD-3138A9
S/G/Y/R/B/O	NT_004754	AL512503	119649298	3	AQ148348	1	chr1	NT_004434	AL359758	142892451	3	AQ140847	1	CTD-3123E12
S/G/Y/R/B/O	NT_004754	AL512503	119666095	3	AQ023110	1	chr1	NT_004434	AL359758	142900895	3	AQ067968	1	CTD-2182D13
S/G/Y/R/B/O	NT_004754	AL512503	119679113	3	AQ029010	-1	chr1	NT_004434	AL160282	143182049	3	AQ029013	-1	RP11-37N10
S/G/Y/R/B/O	NT_004754	AL512503	119679147	3	AQ098664	-1	chr1	NT_077932	BX248398	142254567	2	AQ098311	-1	CTD-3044I19
S/G/Y/R/B/O	NT_004754	AL512503	119679147	3	AQ098664	-1	chr1	NT_077936	AL022240	145562911	3	AQ098311	1	CTD-3044I19
S/G/Y/R/B/O	NT_004754	AL512503	119679529	3	AQ605893	1	chr1	NT_004434	AL359758	142825473	3	AQ811027	1	RP11-958G12
S/G/Y/R/B/O	NT_004754	AL512503	119679543	3	AQ547195	1	chr1	NT_004434	AL359758	142868139	3	AQ547190	1	RP11-415J5
S/G/Y/R/B/O	NT_004754	AL512503	119683511	3	AQ476124	-1	chr1	NT_077931	BX284650	142075142	2	AQ476125	1	CTD-2580J19
S/G/Y/R/B/O	NT_004754	AL512503	119683511	3	AQ476124	-1	chr1	NT_034401	AL954711	145811140	3	AQ476125	-1	CTD-2580J19
S/G/Y/R/B/O	NT_004754	AL512503	119685388	3	AQ005795	-1	chr1	NT_004434	AL592307	143102648	3	AQ000751	-1	CTD-2281I22
S/G/Y/R/B/O	NT_004754	AL512503	119686164	3	AQ775480	1	chr1	NT_004434	AL138791	142793002	3	AQ764896	1	CTD-3136K8
S/G/Y/R/B/O	NT_004754	AL512503	119699131	3	AQ286665	-1	chr1	NT_077931	BX284650	142092180	2	AQ286664	1	RP11-76B11
S/G/Y/R/B/O	NT_004754	AL512503	119701382	3	AQ059460	1	chr1	NT_004434	AL359758	142895419	3	AQ059461	1	CTD-2348L2
S/G/Y/R/B/O	NT_004754	AL512503	119711249	3	AQ386366	1	chr1	NT_004434	AL359758	142825468	3	AQ386368	1	RP11-153K1
S/G/Y/R/B/O	NT_004754	AL512503	119711255	3	AQ491250	1	chr1	NT_004434	AL138791	142805576	3	AQ491265	1	RP11-246A6
S/G/Y/R/B/O	NT_004754	AL512503	119713769	3	AQ015245	1	chr1	NT_004434	AL359758	142858857	3	AQ026632	1	CTD-2314O11
S/G/Y/R/B/O	NT_004754	AL512503	119725111	3	AQ528745	-1	chr1	NT_077932	BX248398	142266071	2	AZ516126	-1	RP11-350C3
S/G/Y/R/B/O	NT_004754	AL512503	119725111	3	AQ528745	-1	chr1	NT_077936	AL022240	145551013	3	AZ516126	1	RP11-350C3
S/G/Y/R/B/O	NT_004754	AL596222	119725711	3										11 confirm
S/G/Y/R/B/O	NT_004754	AL596222	119726049	3	AQ544746	1	chr1	NT_004434	AL049715	142909768	3	AQ544745	1	CTD-2611G7
S/G/Y/R/B/O	NT_004754	AL596222	119735640	3	AQ230040	1	chr1	NT_004434	AL138791	142796383	3	AQ230260	1	CTD-2025E3
S/G/Y/R/B/O	NT_004754	AL596222	119738122	3	AQ534213	-1	chr1	NT_004434	AL138796	142564763	3	AQ534215	-1	RP11-380A19
S/G/Y/R/B/O	NT_004754	AL596222	119738122	3	AQ534213	-1	chr1	NT_004434	AL592307	143100514	3	AQ534215	-1	RP11-380A19
S/G/Y/R/B/O	NT_004754	AL596222	119738122	3	AQ534213	-1	chr1	NT_034400	AL139152	143814818	3	AQ534215	-1	RP11-380A19
S/G/Y/R/B/O	NT_004754	AL596222	119738640	3	AQ402677	1	chr1	NT_004434	AL590452	142696381	3	AQ433105	1	RP11-639G24
S/G/Y/R/B/O	NT_004754	AL596222	119738742	3	AQ533277	1	chr1	NT_004434	AL138791	142798769	3	AQ533279	1	RP11-379B2
S/G/Y/R/B/O	NT_004754	AL596222	119739982	3	AQ286305	-1	chr1	NT_004434	AL592307	143100407	3	AQ321513	-1	RP11-92O14
S/G/Y/R/B/O	NT_004754	AL596222	119740059	3	AQ513625	-1	chr1	NT_004434	AL355505	143122556	3	AQ494207	-1	RP11-720G2
S/G/Y/R/B/O	NT_004754	AL596222	119740182	3	AQ312933	-1	chr1	NT_004434	AL592307	143120450	3	B47683	-1	RP11-1G4
S/G/Y/R/B/O	NT_004754	AL596222	119740495	3	AQ422109	1	chr1	NT_004434	AL138791	142798765	3	AQ422110	1	RP11-206J6
S/G/Y/R/B/O	NT_004754	AL596222	119740501	3	AQ130960	1	chr1	NT_004434	AL359758	142818197	3	AQ095236	1	CTD-3027C3

NT_004754 (cont)

Links	Contig1	Acc1	Start1	Phs	BAC End Acc1	Or1	Chr2	Contig2	Acc2	Start2	Phs	BAC End Acc2	Or2	Clone
S/G/Y/R/B/O	NT_004754	AL596222	119740539	3	AQ191448	1	chr1	NT_004434	AL359758	142892451	3	AQ204747	1	CTD-3233I1
S/G/Y/R/B/O	NT_004754	AL596222	119741910	3	AQ582841	-1	chr1	NT_077936	AL022240	145585292	3	AQ582840	1	RP11-433L4
S/G/Y/R/B/O	NT_004754	AL596222	119753101	3	AQ264335	1	chr1	NT_004434	AL590452	142754056	3	AQ264336	1	CTD-2506M10
S/G/Y/R/B/O	NT_004754	AL596222	119755354	3	AQ457610	1	chr1	NT_004434	AL590452	142736943	3	AQ407580	1	RP11-673P7
S/G/Y/R/B/O	NT_004754	AL596222	119757440	3	AQ087462	1	chr1	NT_004434	AL590452	142695315	3	AQ117652	1	CTD-2188L21
S/G/Y/R/B/O	NT_004754	AL596222	119765024	3	AQ542544	1	chr1	NT_077933	AL592284	142416512	3	AQ542547	-1	RP11-344N23
S/G/Y/R/B/O	NT_004754	AL596222	119765032	3	AQ770961	1	chr1	NT_004434	AL590452	142761065	3	AQ666006	1	RP11-927F14
S/G/Y/R/B/O	NT_004754	AL596222	119775749	3	AQ101245	1	chr1	NT_004434	AL590452	142764694	3	AQ107623	1	CTD-3111E9
S/G/Y/R/B/O	NT_004754	AL596222	119777365	3	AQ427683	-1	chr1	NT_077932	BX248398	142258387	2	AQ427685	-1	CTD-2575E3
S/G/Y/R/B/O	NT_004754	AL596222	119777365	3	AQ427683	-1	chr1	NT_077936	AL022240	145558740	3	AQ427685	1	CTD-2575E3
S/G/Y/R/B/O	NT_004754	AL596222	119777365	3	AQ427683	-1	chr1	NT_034401	AL954711	145777990	3	AQ427685	-1	CTD-2575E3
S/G/Y/R/B/O	NT_004754	AL596222	119777365	3	AQ626375	-1	chr1	NT_077936	AL022240	145585296	3	AQ626371	1	CTD-2655I9
S/G/Y/R/B/O	NT_004754	AL596222	119777365	3	AQ626375	-1	chr1	NT_034401	AL954711	145750878	3	AQ626371	-1	CTD-2655I9
S/G/Y/R/B/O	NT_004754	AL596222	119777581	3	AQ583253	-1	chr1	NT_004434	AL592307	143120442	3	AQ583257	-1	RP11-458D21
S/G/Y/R/B/O	NT_004754	AL596222	119783470	3	AQ544745	-1	chr1	NT_004434	AL592307	142969340	3	AQ544746	-1	CTD-2611G7
S/G/Y/R/B/O	NT_004754	AL596222	119784827	3	AQ026781	1	chr1	NT_004434	AL359758	142820250	3	AQ026775	1	CTD-2324I13
S/G/Y/R/B/O	NT_004754	AL596222	119800697	3	AQ427309	-1	chr1	NT_077932	BX248398	142191508	2	AQ427295	-1	CTD-2566M4
S/G/Y/R/B/O	NT_004754	AL596222	119800697	3	AQ427309	-1	chr1	NT_077933	AL592284	142370725	3	AQ427295	1	CTD-2566M4
S/G/Y/R/B/O	NT_004754	AL596222	119800697	3	AQ427309	-1	chr1	NT_034401	AL954711	145757119	3	AQ427295	-1	CTD-2566M4
S/G/Y/R/B/O	NT_004754	AL596222	119800697	3	AQ427309	-1	chr1	NT_032962	AL358813	146370984	3	AQ427295	-1	CTD-2566M4
S/G/Y/R/B/O	NT_004754	AL596222	119801084	3	AQ204747	-1	chr1	NT_004434	AL592307	142954666	3	AQ191448	-1	CTD-3233I1
S/G/Y/R/B/O	NT_004754	AL596222	119801532	3	AQ138875	1	chr1	NT_004434	AL359758	142846464	3	AQ121145	1	CTD-3075M24
S/G/Y/R/B/O	NT_004754	AL596222	119805065	3	AQ180943	-1	chr1	NT_004434	AL049715	142918236	3	AQ190242	-1	CTD-3221E14
S/G/Y/R/B/O	NT_004754	AL596222	119812195	3	AQ532215	1	chr1	NT_004434	AL590452	142706991	3	AQ532218	1	RP11-351G6
S/G/Y/R/B/O	NT_004754	AL596222	119812200	3	AQ713711	1	chr1	NT_004434	AL590452	142706996	3	AQ572742	1	RP11-975P23
S/G/Y/R/B/O	NT_004754	AL596222	119824874	3	AQ547190	-1	chr1	NT_004434	AL592307	143015223	3	AQ547195	-1	RP11-415J5
S/G/Y/R/B/O	NT_004754	AL596222	119830013	3	AQ347227	-1	chr1	NT_004434	AL592307	143014467	3	AQ347224	-1	RP11-114O18
S/G/Y/R/B/O	NT_004754	BX322346	119830767	3										3 confirm
S/G/Y/R/B/O	NT_004754	BX322346	119839435	3	AQ192673	-1	chr1	NT_004434	AL592307	142959614	3	AQ192744	-1	CTD-2251B14
S/G/Y/R/B/O	NT_004754	BX322346	119839824	3	AQ746527	1	chr1	NT_004434	AL590452	142731864	3	AQ745873	1	CTD-2273M15
S/G/Y/R/B/O	NT_004754	BX322346	119841264	3	AQ505075	-1	chr1	NT_077932	BX248398	142258662	2	AQ505073	-1	RP11-282M6
S/G/Y/R/B/O	NT_004754	BX322346	119841264	3	AQ505075	-1	chr1	NT_077936	AL022240	145558741	3	AQ505073	1	RP11-282M6
S/G/Y/R/B/O	NT_004754	BX322346	119841826	3	AQ889266	1	chr1	NT_004434	AL138791	142792996	3	AQ785551	1	CTD-3077C20
S/G/Y/R/B/O	NT_004754	BX322346	119842906	3	AQ121145	-1	chr1	NT_004434	AL359758	142892019	3	AQ138875	-1	CTD-3075M24
S/G/Y/R/B/O	NT_004754	BX322346	119843291	3	AQ420313	1	chr1	NT_004434	AL590452	142685889	3	AQ420327	1	RP11-184K1
S/G/Y/R/B/O	NT_004754	BX322346	119843297	3	AQ420267	1	chr1	NT_004434	AL590452	142685889	3	AQ420270	1	RP11-184I13
S/G/Y/R/B/O	NT_004754	BX322346	119843303	3	B72867	1	chr1	NT_077936	AL691471	145508334	3	B72866	-1	RP11-10I13