Chromosome 1 - BAC End Pairs

Chromosome 1 - BAC End Pairs - Single Contig

Description of this page

Main Reports Page

Main Assembly Page

Main BAC End Pairs Page

Whole Chromosome

Single Contigs

Line color code:

White: lists number of confirming clone bridges for this accession
Blue: clone bridges two adjacent contigs
Green: clone bridges close contigs
Pink: multiple clones bridge distant regions on same chromosome
Red: multiple clones bridge regions on different chromosomes

NT_077402	NT_077911	NT_077912	NT_034471	NT_077913	NT_077914	NT_077915	NT_077916
NT_004350	NT_004321	NT_004547	NT_077917	NT_077918	NT_077919	NT_028054	NT_021937
NT_077382	NT_004873	NT_077920	NT_030584	NT_077921	NT_004610	NT_004391	NT_077383
NT_077922	NT_077384	NT_037485	NT_077385	NT_004538	NT_077923	NT_004511	NT_077386
NT_004852	NT_032977	NT_004464	NT_077924	NT_034383	NT_077925	NT_077926	NT_004483
NT_037488	NT_004902	NT_026943	NT_004686	NT_077927	NT_021979	NT_034389	NT_077928
NT_028050	NT_030567	NT_029860	NT_077929	NT_019273	NT_004754	NT_077387	NT_022052
NT_022071	NT_077930	NT_077931	NT_077932	NT_077933	NT_004434	NT_077934	NT_034398
NT_034400	NT_077935	NT_077936	NT_034401	NT_034403	NT_032962	NT_004668	NT_004487
NT_004671	NT_034410	NT_077389	NT_021877	NT_077937	NT_021953	NT_077938	NT_077939
NT_077940	NT_004525	NT_004559	NT_031728	NT_021973	NT_004433	NT_030561	NT_004836
NT_004536	NT_077941	NT_031730	NT_077390	NT_077942	NT_032968

NT_034401

Links	Contig1	Acc1	Start1	Phs	BAC End Acc1	Or1	Chr2	Contig2	Acc2	Start2	Phs	BAC End Acc2	Or2	Clone
S/G/Y/R/B/O	NT_034401	AL954711	145662469	3										8 confirm
S/G/Y/R/B/O	NT_034401	AL954711	145811140	3	AQ476125	-1	chr1	NT_004754	AL512503	119683511	3	AQ476124	-1	CTD-2580J19
S/G/Y/R/B/O	NT_034401	AL954711	145777990	3	AQ427685	-1	chr1	NT_004754	AL596222	119777365	3	AQ427683	-1	CTD-2575E3
S/G/Y/R/B/O	NT_034401	AL954711	145750878	3	AQ626371	-1	chr1	NT_004754	AL596222	119777365	3	AQ626375	-1	CTD-2655I9
S/G/Y/R/B/O	NT_034401	AL954711	145757119	3	AQ427295	-1	chr1	NT_004754	AL596222	119800697	3	AQ427309	-1	CTD-2566M4
S/G/Y/R/B/O	NT_034401	AL954711	145759428	3	AQ086620	1	chr1	NT_077931	BX284650	142017053	2	AQ086527	1	CTD-2169D16
S/G/Y/R/B/O	NT_034401	AL954711	145796634	3	AQ095023	1	chr1	NT_077931	BX284650	142054137	2	AQ207838	1	CTD-3028K24
S/G/Y/R/B/O	NT_034401	AL954711	145696390	3	AQ018818	1	chr1	NT_077931	BX284650	142076987	2	AQ018821	1	CTD-2310E14
S/G/Y/R/B/O	NT_034401	AL954711	145796634	3	AQ095023	1	chr1	NT_077932	BX248398	142185752	2	AQ207838	-1	CTD-3028K24
S/G/Y/R/B/O	NT_034401	AL954711	145723204	3	AZ515726	1	chr1	NT_077932	BX248398	142191629	2	AQ476260	-1	CTD-2591G21
S/G/Y/R/B/O	NT_034401	AL954711	145709484	3	AQ371875	1	chr1	NT_077932	BX248398	142247576	2	AQ371873	-1	RP11-157G19
S/G/Y/R/B/O	NT_034401	AL954711	145785585	3	AQ070196	-1	chr1	NT_077932	BX248398	142247815	2	AQ070510	-1	CTD-3040G16
S/G/Y/R/B/O	NT_034401	AL954711	145723204	3	AZ515726	1	chr1	NT_077933	AL592284	142370726	3	AQ476260	1	CTD-2591G21
S/G/Y/R/B/O	NT_034401	AL954711	145811035	3	AQ322387	-1	chr1	NT_077933	AL592284	142398624	3	AQ322388	1	RP11-92F19
S/G/Y/R/B/O	NT_034401	AL954711	145761028	3	AQ429340	-1	chr1	NT_077933	AL592284	142460952	3	AQ429336	1	CTD-2576B15
S/G/Y/R/B/O	NT_034401	AL954711	145767162	3	AQ371873	-1	chr1	NT_077933	AL592284	142465678	3	AQ371875	1	RP11-157G19
S/G/Y/R/B/O	NT_034401	AL954711	145765038	3	AQ283821	-1	chr1	NT_077933	AL592284	142469081	3	AQ283820	1	RP11-89F3
S/G/Y/R/B/O	NT_034401	AL954711	145757240	3	AQ476260	-1	chr1	NT_077933	AL592284	142479379	3	AZ515726	1	CTD-2591G21
S/G/Y/R/B/O	NT_034401	AL954711	145785328	3	B85485	-1	chr1	NT_077933	AL592284	142479392	3	B85484	1	RP11-18E7
S/G/Y/R/B/O	NT_034401	AL954711	145778404	3	AQ715695	-1	chr1	NT_077933	AL592284	142479395	3	AQ715526	1	RP11-1005P5
S/G/Y/R/B/O	NT_034401	AL954711	145757095	3	AQ395397	-1	chr1	NT_004434	AL138796	142544805	3	AQ395395	1	CTD-2546M6
S/G/Y/R/B/O	NT_034401	AL954711	145704866	3	AQ106152	1	chr1	NT_004434	AL138796	142653523	3	AQ102791	-1	CTD-3055G10
S/G/Y/R/B/O	NT_034401	AL954711	145662606	3	AQ379565	1	chr1	NT_004434	AL138796	142658070	3	AQ379561	-1	RP11-135I21
S/G/Y/R/B/O	NT_034401	AL954711	145670859	3	AQ815341	1	chr1	NT_004434	AL138796	142660590	3	AQ809768	-1	RP11-590E9
S/G/Y/R/B/O	NT_034401	AL954711	145662478	3	AQ756495	1	chr1	NT_004434	AL590452	142685344	3	AQ599754	-1	RP11-930H23
S/G/Y/R/B/O	NT_034401	AL954711	145678293	3	AQ543565	1	chr1	NT_004434	AL590452	142695890	3	AQ543562	-1	RP11-345G13
S/G/Y/R/B/O	NT_034401	AL954711	145737953	3	AQ244591	1	chr1	NT_004434	AL590452	142706557	3	B69334	-1	CTD-2053N17
S/G/Y/R/B/O	NT_034401	AL954711	145725755	3	AQ041366	-1	chr1	NT_004434	AL590452	142726223	3	AQ055610	-1	CTD-2338F14
S/G/Y/R/B/O	NT_034401	AL954711	145712833	3	AQ598422	1	chr1	NT_004434	AL590452	142734800	3	AQ563308	-1	RP11-910L5
S/G/Y/R/B/O	NT_034401	AL954711	145681168	3	AQ090559	-1	chr1	NT_004434	AL590452	142753609	3	AQ090316	-1	CTD-3007P21
S/G/Y/R/B/O	NT_034401	AL954711	145679597	3	AQ357830	-1	chr1	NT_004434	AL138791	142798251	3	AQ310983	-1	CTD-2529I9
S/G/Y/R/B/O	NT_034401	AL954711	145751033	3	AQ095233	-1	chr1	NT_004434	AL138791	142808135	3	AQ130958	1	CTD-3027A21
S/G/Y/R/B/O	NT_034401	AL954711	145757119	3	AQ427295	-1	chr1	NT_004434	AL359758	142892951	3	AQ427309	1	CTD-2566M4
S/G/Y/R/B/O	NT_034401	AL954711	145777990	3	AQ427685	-1	chr1	NT_004434	AL049715	142916534	3	AQ427683	1	CTD-2575E3
S/G/Y/R/B/O	NT_034401	AL954711	145811140	3	AQ476125	-1	chr1	NT_004434	AL592307	143011611	3	AQ476124	1	CTD-2580J19
S/G/Y/R/B/O	NT_034401	AL954711	145751036	3	AQ474237	-1	chr1	NT_034398	AL356004	143561124	3	AQ474240	-1	CTD-2595M3
S/G/Y/R/B/O	NT_034401	AL954711	145737829	3	AQ231433	1	chr1	NT_034398	AL356004	143572778	3	AQ234507	1	CTD-2052H18
S/G/Y/R/B/O	NT_034401	AL954711	145730780	3	AQ056621	1	chr1	NT_034400	AL139152	143837762	3	AQ056619	-1	CTD-2340B16
S/G/Y/R/B/O	NT_034401	AL954711	145723198	3	AQ346354	1	chr1	NT_034400	AL596177	143938888	3	AQ311867	-1	RP11-101G13
S/G/Y/R/B/O	NT_034401	AL954711	145794031	3	AQ417754	-1	chr1	NT_077935	AL451043	145244041	3	AQ417757	-1	RP11-197O22
S/G/Y/R/B/O	NT_034401	AL954711	145765460	3	AQ281372	1	chr1	NT_077936	AL592207	145392150	3	AQ281375	1	RP11-91G11
S/G/Y/R/B/O	NT_034401	AL954711	145806447	3	B79990	1	chr1	NT_077936	AL592207	145416115	3	B79991	1	CTD-2042C20
S/G/Y/R/B/O	NT_034401	AL954711	145806459	3	AQ676587	1	chr1	NT_077936	AL592207	145416122	3	AQ681709	1	CTD-2142C20
S/G/Y/R/B/O	NT_034401	AL954711	145759428	3	AQ086620	1	chr1	NT_077936	AL592207	145467259	3	AQ086527	1	CTD-2169D16
S/G/Y/R/B/O	NT_034401	AL954711	145709484	3	AQ371875	1	chr1	NT_077936	AL022240	145569626	3	AQ371873	1	RP11-157G19
S/G/Y/R/B/O	NT_034401	AL954711	145785585	3	AQ070196	-1	chr1	NT_077936	AL022240	145569703	3	AQ070510	1	CTD-3040G16
S/G/Y/R/B/O	NT_034401	AL954711	145723204	3	AZ515726	1	chr1	NT_032962	AL358813	146371105	3	AQ476260	-1	CTD-2591G21
S/G/Y/R/B/O	NT_034401	AL954711	145778435	3	AQ375281	-1	chr1	NT_034403	AL356957	146214170	3	AQ375279	-1	RP11-145F12
S/G/Y/R/B/O	NT_034401	AL954711	145796634	3	AQ095023	1	chr1	NT_032962	AL358813	146365228	3	AQ207838	-1	CTD-3028K24
S/G/Y/R/B/O	NT_034401	AL954711	145796634	3	AQ095023	1	chr1	NT_077933	AL592284	142376626	3	AQ207838	1	CTD-3028K24

NT_034401 (cont)

Links	Contig1	Acc1	Start1	Phs	BAC End Acc1	Or1	Chr2	Contig2	Acc2	Start2	Phs	BAC End Acc2	Or2	Clone
S/G/Y/R/B/O	NT_034401	AL954711	145785328	3	B85485	-1	chr1	NT_034398	AL049742	143673800	3	B85484	-1	RP11-18E7
S/G/Y/R/B/O	NT_034401	AL954711	145796634	3	AQ095023	1	chr1	NT_077936	AL691471	145504338	3	AQ207838	1	CTD-3028K24
S/G/Y/R/B/O	NT_034401	AL954711	145799037	3	AQ008336	1	chr1	NT_034403	AL356957	146275187	3	AQ008347	-1	CTD-2280E12
S/G/Y/R/B/O	NT_034401	AL954711	145799037	3	AQ008336	1	chr1	NT_032962	AL358813	146446429	3	AQ008347	-1	CTD-2280E12
S/G/Y/R/B/O	NT_034401	AL954711	145663427	3	AQ265274	1	chr16	NT_010498	AC138625	70870411	3	AQ265276	1	CTD-2508I19
S/G/Y/R/B/O	NT_034401	AL954711	145663401	3	AQ260709	1	chr16	NT_010498	AC138625	70870487	3	AQ260712	1	CTD-2508I20
S/G/Y/R/B/O	NT_034401	AL954711	145832525	3	AQ379525	1	chr2	NT_034508	AC018696	91257735	3	AQ379529	-1	RP11-135I9
S/G/Y/R/B/O	NT_034401	AL954711	145788564	3	AQ535301	1	chr2	NT_034508	AC116050	91260153	3	AQ535304	1	RP11-317J20
S/G/Y/R/B/O	NT_034401	AL954711	145765429	3	AQ237618	1	chr2	NT_034508	AC116050	91296409	3	AQ196056	1	RP11-66D16
S/G/Y/R/B/O	NT_034401	AL954711	145735850	3	AQ003121	1	chr2	NT_034508	AC027612	91329137	3	AQ004693	1	CTD-2144F5
S/G/Y/R/B/O	NT_034401	AL954711	145712836	3	AQ195909	1	chr2	NT_034508	AC027612	91360470	3	AQ195911	1	RP11-58E1
S/G/Y/R/B/O	NT_034401	AL954711	145760808	3	AQ012644	1	chr2	NT_034508	AC027612	91367213	3	AQ012646	1	CTD-2299K3
S/G/Y/R/B/O	NT_034401	AL954711	145760806	3	AQ005330	1	chr2	NT_034508	AC027612	91381387	3	AQ005329	1	CTD-2280B16
S/G/Y/R/B/O	NT_034401	AL592492	145835258	3										4 confirm
S/G/Y/R/B/O	NT_034401	AL592492	145865931	3	AQ012646	-1	chr1	NT_077932	BX248398	142241234	2	AQ012644	1	CTD-2299K3
S/G/Y/R/B/O	NT_034401	AL592492	145865931	3	AQ012646	-1	chr1	NT_077936	AL022240	145576190	3	AQ012644	-1	CTD-2299K3
S/G/Y/R/B/O	NT_034401	AL592492	145840823	3	AQ144813	1	chr1	NT_077389	AL358175	202939311	3	AQ145062	-1	CTD-3092E12
S/G/Y/R/B/O	NT_034401	AL592492	145847791	3	AQ145062	-1	chr1	NT_077389	AL358175	202932927	3	AQ144813	1	CTD-3092E12
S/G/Y/R/B/O	NT_034401	AL592492	145857221	3	AQ338514	-1	chr1	NT_034403	AL356957	146146596	3	AQ338435	-1	CTD-3118F9
S/G/Y/R/B/O	NT_034401	AL592492	145872144	3	AQ406320	-1	chr1	NT_034403	AL732363	146094144	3	AQ409125	-1	RP11-635O18
S/G/Y/R/B/O	NT_034401	AL592492	145855285	3	AQ735659	1	chr2	NT_034508	AC018696	91256046	3	AQ755028	1	CTD-2259M11
S/G/Y/R/B/O	NT_034401	AL592492	145866395	3	AQ239899	1	chr2	NT_034508	AC116050	91259231	3	AQ239897	1	CTD-2386M17
S/G/Y/R/B/O	NT_034401	AL592492	145835548	3	AQ475670	1	chr2	NT_034508	AC116050	91259323	3	AQ475671	1	CTD-2580F3
S/G/Y/R/B/O	NT_034401	AL592492	145866395	3	B58242	1	chr2	NT_034508	AC116050	91267944	3	AQ222670	1	CTD-2012E12
S/G/Y/R/B/O	NT_034401	AL592492	145852231	3	AQ770180	1	chr2	NT_034508	AC116050	91268425	3	AQ738274	1	CTD-2260F1
S/G/Y/R/B/O	NT_034401	AL592492	145848204	3	AQ189303	1	chr2	NT_034508	AC027612	91336292	3	AQ189247	1	CTD-3205N21
S/G/Y/R/B/O	NT_034401	AL592492	145835257	3	AQ890882	1	chr2	NT_034508	AC027612	91351917	3	AQ769699	1	CTD-3160E24
S/G/Y/R/B/O	NT_034401	AL592492	145877545	3	AQ738269	1	chr21	NT_029490	AL078471	9928651	3	AQ770175	1	CTD-2260D15
S/G/Y/R/B/O	NT_034401	AL592492	145871276	3	AQ602529	1	chr21	NT_029490	AL078471	9949936	3	AQ602349	1	CTD-2114G2
S/G/Y/R/B/O	NT_034401	AL592492	145835257	3	AQ890882	1	chr21	NT_029490	AF254983	10033263	3	AQ769699	1	CTD-3160E24
S/G/Y/R/B/O	NT_034401	AL592492	145850851	3	AQ108879	-1	chr21	NT_029490	AF254983	10076520	3	AQ108876	-1	CTD-2372I13
S/G/Y/R/B/O	NT_034401	AL592492	145870594	3	AQ785144	-1	chr21	NT_029490	AF254983	10085363	3	AQ806442	-1	CTD-3159C1
S/G/Y/R/B/O	NT_034401	AL592492	145873479	3	AQ275908	-1	chr21	NT_029490	AF254983	10114762	3	AQ275912	-1	CTD-2517K11
S/G/Y/R/B/O	NT_034401	AL513526	145881636	3										4 confirm
S/G/Y/R/B/O	NT_034401	AL513526	145925209	3	AQ343529	-1	chr1	NT_077932	BX248398	142248213	2	AQ343532	1	RP11-121A12
S/G/Y/R/B/O	NT_034401	AL513526	145884159	3	AQ345687	-1	chr1	NT_077933	AL592284	142398029	3	AQ345685	-1	RP11-114A20
S/G/Y/R/B/O	NT_034401	AL513526	145903897	3	AQ004693	-1	chr1	NT_004434	AL592307	143034056	3	AQ003121	1	CTD-2144F5
S/G/Y/R/B/O	NT_034401	AL513526	145925209	3	AQ343529	-1	chr1	NT_077936	AL022240	145568846	3	AQ343532	-1	RP11-121A12
S/G/Y/R/B/O	NT_034401	AL513526	145894552	3	AQ269169	-1	chr1	NT_034403	AL356957	146101716	3	AQ269166	-1	RP11-76O17
S/G/Y/R/B/O	NT_034401	AL513526	145894859	3	AQ350208	-1	chr1	NT_034403	AL732363	146093985	3	AQ385465	-1	RP11-133D23
S/G/Y/R/B/O	NT_034401	AL513526	145936765	3	B81705	-1	chr1	NT_034403	AL732363	146054423	3	B85298	-1	RP11-14N7
S/G/Y/R/B/O	NT_034401	AL513526	145921012	3	AQ076874	1	chr2	NT_032994	AC113612	90034921	3	AQ076877	-1	CTD-2367M11
S/G/Y/R/B/O	NT_034401	AL513526	145925832	3	AQ464284	1	chr2	NT_034508	AC018696	91111202	3	AQ434253	1	RP11-677C7
S/G/Y/R/B/O	NT_034401	AL513526	145915751	3	AQ550304	1	chr2	NT_034508	AC018696	91156505	3	AQ550301	1	RP11-432E20
S/G/Y/R/B/O	NT_034401	AL513526	145915685	3	AQ265810	1	chr2	NT_034508	AC018696	91160678	3	AQ265811	1	CTD-2510G12
S/G/Y/R/B/O	NT_034401	AL513526	145925762	3	AQ264185	1	chr2	NT_034508	AC018696	91160703	3	AQ264188	1	CTD-2509A14
S/G/Y/R/B/O	NT_034401	AL513526	145884923	3	AQ669143	1	chr2	NT_034508	AC018696	91180570	3	AQ771878	1	RP11-973F5
S/G/Y/R/B/O	NT_034401	AL513526	145912525	3	AQ373363	1	chr2	NT_034508	AC018696	91180573	3	AQ373361	1	RP11-158J7
S/G/Y/R/B/O	NT_034401	AL513526	145884895	3	AQ412160	1	chr2	NT_034508	AC018696	91180581	3	AQ412163	1	RP11-192D15
S/G/Y/R/B/O	NT_034401	AL513526	145882326	3	AQ540443	1	chr2	NT_034508	AC018696	91180849	3	AQ540442	1	RP11-341H2

NT_034401 (cont)

Links	Contig1	Acc1	Start1	Phs	BAC End Acc1	Or1	Chr2	Contig2	Acc2	Start2	Phs	BAC End Acc2	Or2	Clone
S/G/Y/R/B/O	NT_034401	AL513526	145914932	3	AQ122602	1	chr2	NT_034508	AC027612	91318055	3	AQ106938	1	CTD-3086A8
S/G/Y/R/B/O	NT_034401	AL513526	145915255	3	AQ106938	-1	chr2	NT_034508	AC027612	91318169	3	AQ122602	-1	CTD-3086A8
S/G/Y/R/B/O	NT_034401	AL513526	145882387	3	AQ090864	1	chr2	NT_034508	AC027612	91334404	3	AQ214206	1	CTD-3011I15
S/G/Y/R/B/O	NT_034401	AL513526	145889175	3	AQ383232	1	chr2	NT_034508	AC027612	91336290	3	AQ383228	1	RP11-138K9
S/G/Y/R/B/O	NT_034401	AL513526	145898680	3	AQ214206	-1	chr2	NT_034508	AC027612	91350854	3	AQ090864	-1	CTD-3011I15
S/G/Y/R/B/O	NT_034401	AL513526	145901492	3	AQ020838	-1	chr2	NT_034508	AC027612	91420912	3	AQ020839	-1	CTD-2302N21
S/G/Y/R/B/O	NT_034401	AL513526	145932132	3	AQ234534	-1	chr2	NT_034508	AC027612	91442767	3	AQ231458	-1	CTD-2052N8
S/G/Y/R/B/O	NT_034401	AL513526	145933047	3	AQ416934	-1	chr2	NT_034508	AC027612	91457299	3	AQ416932	-1	RP11-165D20
S/G/Y/R/B/O	NT_034401	AL513526	145898879	3	AQ071419	-1	chr2	NT_034508	AC127391	91482254	3	AQ067599	-1	CTD-2238H14
S/G/Y/R/B/O	NT_034401	AL513526	145898879	3	AQ071419	-1	chr2	NT_034508	AC128677	91682105	3	AQ067599	1	CTD-2238H14
S/G/Y/R/B/O	NT_034401	AL513526	145933047	3	AQ416934	-1	chr2	NT_034508	AC128677	91706798	3	AQ416932	1	RP11-165D20
S/G/Y/R/B/O	NT_034401	AL663102	145937234	3										2 confirm
S/G/Y/R/B/O	NT_034401	AL663102	145943194	3	AQ371905	-1	chr1	NT_077932	BX248398	142266803	2	AQ371907	1	RP11-157I11
S/G/Y/R/B/O	NT_034401	AL663102	145943194	3	AQ371905	-1	chr1	NT_077936	AL022240	145550475	3	AQ371907	-1	RP11-157I11
S/G/Y/R/B/O	NT_034401	AL663102	145937485	3	AQ521717	-1	chr1	NT_077936	AL022240	145575736	3	AQ831456	-1	RP11-815G8
S/G/Y/R/B/O	NT_034401	AL663102	145937231	3	AQ118692	1	chr2	NT_034508	AC116050	91281094	3	AQ164798	1	CTD-3015L13