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Chromosome 9 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_008476
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008476AC074086818887211        
S/G/Y/R/B/O NT_008476AL583841818912213        
S/G/Y/R/B/O NT_008476AL391219820840203        
S/G/Y/R/B/O NT_008476AL354751822269203        
S/G/Y/R/B/O NT_008476AL136097823291483        
S/G/Y/R/B/O NT_008476AL137848825225363        
S/G/Y/R/B/O NT_008476AL157827826728773        
S/G/Y/R/B/O NT_008476AL137074828113853        
S/G/Y/R/B/O NT_008476AL136981828943243        
S/G/Y/R/B/O NT_008476AL389924830765043        
S/G/Y/R/B/O NT_008476AL451065831469063        
S/G/Y/R/B/O NT_008476AL390760833085953        
S/G/Y/R/B/O NT_008476AL354991834386623        
S/G/Y/R/B/O NT_008476AL583839834753783AFMA244WD99100.409100.742AC022082, AC022082, AL583839
S/G/Y/R/B/O NT_008476AL353629836662753AFM238VA79101.209100.891 AL353629
S/G/Y/R/B/O NT_008476AL359181838755853AFM212YB49101.009101.271 AL359181
S/G/Y/R/B/O NT_008476AL359181839065213AFM289WH19101.109100.871 AL359181
S/G/Y/R/B/O NT_008476AL442224839445843        
S/G/Y/R/B/O NT_008476AL357073840455411        
S/G/Y/R/B/O NT_008476AL360020841452082        
S/G/Y/R/B/O NT_008476AL158152843039183        
S/G/Y/R/B/O NT_008476AL669815844164353        
S/G/Y/R/B/O NT_008476AL691447844584941        
S/G/Y/R/B/O NT_008476AC083821844772661        
S/G/Y/R/B/O NT_008476AC087784844855211        
S/G/Y/R/B/O NT_008476AL358232845869383        
S/G/Y/R/B/O NT_008476AL161728847012783        
S/G/Y/R/B/O NT_008476AL157936848698073        
S/G/Y/R/B/O NT_008476AC015671849923661        
S/G/Y/R/B/O NT_008476AL353768850300593        
S/G/Y/R/B/O NT_008476AL354893851961213        
S/G/Y/R/B/O NT_008476AL157384853001013        
S/G/Y/R/B/O NT_008476AL446023854581443        
S/G/Y/R/B/O NT_008476AL161729856413682AFMA338YD99101.809103.421AC053475, AC053475, AL161729
S/G/Y/R/B/O NT_008476AC053475856877061        
S/G/Y/R/B/O NT_008476AC027096856923341        
S/G/Y/R/B/O NT_008476AL392185857053503        
S/G/Y/R/B/O NT_008476AL355536857750323        
S/G/Y/R/B/O NT_008476AL354861858330663AFM347ZF59103.309103.421 AC011845, AL354861
S/G/Y/R/B/O NT_008476AL354861859255333AFMA298WE59103.309103.421 AC011845, AL354861
S/G/Y/R/B/O NT_008476AL161454859582273        
S/G/Y/R/B/O NT_008476AL159167861007633        
S/G/Y/R/B/O NT_008476AL449403861736661        
S/G/Y/R/B/O NT_008476AL138754863455823        
S/G/Y/R/B/O NT_008476AL160269864069563AFMA137YB99104.409104.481 AL160269
S/G/Y/R/B/O NT_008476AL133477865173113        
S/G/Y/R/B/O NT_008476AL353578866563293        
S/G/Y/R/B/O NT_008476AL589843867910943        
S/G/Y/R/B/O NT_008476AL451122869317213        
S/G/Y/R/B/O NT_008476AL161629869999883AFMB014YE5  995.651 AC015889, AL161629


  NT_008476 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008476AL161629869999883AFMB014YE5994.30  1 AC015889, AL161629
S/G/Y/R/B/O NT_008476AL353649871300813AFMA212WG9  996.461 AC009900, AL353649
S/G/Y/R/B/O NT_008476AL353649871300813AFMA212WG9994.30  1 AC009900, AL353649
S/G/Y/R/B/O NT_008476AL389888871944913GATA11A07  996.461 AL389888
S/G/Y/R/B/O NT_008476AL161632873958053        
S/G/Y/R/B/O NT_008476AL354853873991043        
S/G/Y/R/B/O NT_008476AL353619875754263        
S/G/Y/R/B/O NT_008476AL446024877167253        
S/G/Y/R/B/O NT_008476AL354862877681282        
S/G/Y/R/B/O NT_008476AL162585879200813        
S/G/Y/R/B/O NT_008476AL355607879621223        
S/G/Y/R/B/O NT_008476AL158071881030512AFMA210ZE5995.90997.532AC021580, AC021580, AL158071
S/G/Y/R/B/O NT_008476AL158071881540352AFMB316YF1996.30998.061 AL158071
S/G/Y/R/B/O NT_008476AL513353882530533        
S/G/Y/R/B/O NT_008476AL353645883562783        
S/G/Y/R/B/O NT_008476AL353764883857412        
S/G/Y/R/B/O NT_008476AL159999885716203UT6185  9104.481 AL159999, AL359391
S/G/Y/R/B/O NT_008476AL159999885786163UT2372  9104.481 AL159999, AL359391
S/G/Y/R/B/O NT_008476AL159999886522953AFMA337ZH1999.20999.401 AL359391
S/G/Y/R/B/O NT_008476AL591214886772213AFMA121XD5999.10999.401 AL359391, AL591214
S/G/Y/R/B/O NT_008476AL591214886820083AFMB312XF9999.20999.401 AL359391
S/G/Y/R/B/O NT_008476AC016177887195571        
S/G/Y/R/B/O NT_008476 - D9S151  9100.740AL451065, AL451065
S/G/Y/R/B/O NT_008476 - UT8063  9101.270AL442224, AL442224
S/G/Y/R/B/O NT_008476 - UT1531  9103.421AC092627, AC092627