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Chromosome 9 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_017568
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_017568AC0023201040768441        
S/G/Y/R/B/O NT_017568AL4491051041870961UT8065  9122.231 AL449105
S/G/Y/R/B/O NT_017568AL4493051043175243AFM211WC99120.409120.041 AL449305
S/G/Y/R/B/O NT_017568AL1370661043863783        
S/G/Y/R/B/O NT_017568AL3594551045223493AFM297WB19120.409120.041 AL359455
S/G/Y/R/B/O NT_017568AL1627271047103143AFMA131YC19121.109120.771 AC022644, AL162727
S/G/Y/R/B/O NT_017568AL1577021047159583        
S/G/Y/R/B/O NT_017568AL1623931048768483        
S/G/Y/R/B/O NT_017568AL1378501050610503        
S/G/Y/R/B/O NT_017568AL4455431051867643AFMB025YE19122.609122.231 AC011161, AL445543
S/G/Y/R/B/O NT_017568AL3567961053759193GATA4D10  9123.331 AC024555
S/G/Y/R/B/O NT_017568AL1388951054525923        
S/G/Y/R/B/O NT_017568AL1602751055828843        
S/G/Y/R/B/O NT_017568AL3902401058057343AFMB357ZA99124.409123.331 AL390240, AL645562
S/G/Y/R/B/O NT_017568AL3902401058183463GATA123E07  9123.871 AL390240, AL645562
S/G/Y/R/B/O NT_017568AL1334121058643693        
S/G/Y/R/B/O NT_017568AL1624251060776233HXB  9123.331 AL162425
S/G/Y/R/B/O NT_017568AL1624251061518913MFD94  9123.331 AL162425
S/G/Y/R/B/O NT_017568AL1624251061932653AFM042XH49124.309124.331 AL353589
S/G/Y/R/B/O NT_017568AL3556011062542413AFMA113YB59124.209123.331 AL353589, AL355601
S/G/Y/R/B/O NT_017568AL3556011062566293GATA27B07  9123.871 AL353589, AL355601
S/G/Y/R/B/O NT_017568AB0208691063402363        
S/G/Y/R/B/O NT_017568AB0208701064382383        
S/G/Y/R/B/O NT_017568AB0208711065382383        
S/G/Y/R/B/O NT_017568AB0208721066382383        
S/G/Y/R/B/O NT_017568AB0208731067539513GGAA16D02  9123.871 AB020873, AL691420
S/G/Y/R/B/O NT_017568AB0208731067846853AFM234YC59124.409123.871 AB020873
S/G/Y/R/B/O NT_017568AB0208741068382383        
S/G/Y/R/B/O NT_017568AB0208751069382383        
S/G/Y/R/B/O NT_017568AB0208761070382383        
S/G/Y/R/B/O NT_017568AB0208771072259043UT913  9125.631 AB020877
S/G/Y/R/B/O NT_017568AB0208781072382383        
S/G/Y/R/B/O NT_017568AL3531411073487633        
S/G/Y/R/B/O NT_017568AL1370241073920413AFM164YA119125.609124.751 AL137024
S/G/Y/R/B/O NT_017568AL6699631075236693        
S/G/Y/R/B/O NT_017568AL1332821075248823        
S/G/Y/R/B/O NT_017568AL1332841076654083AFM028YE59125.609125.631 AL133284
S/G/Y/R/B/O NT_017568AL1578291078778273UT6090  9125.181 AC015464, AL157829
S/G/Y/R/B/O NT_017568AL1578291079480253AFMA239XC59126.409125.631 AL157829
S/G/Y/R/B/O NT_017568AL3920851079712493        
S/G/Y/R/B/O NT_017568AL3549811081309851        
S/G/Y/R/B/O NT_017568AL3556081082396033        
S/G/Y/R/B/O NT_017568AL3587921083875313FB26C4  9126.411 AL358792
S/G/Y/R/B/O NT_017568AL4456441085412743AFMA304XB99128.009126.411 AL356386, AL445644
S/G/Y/R/B/O NT_017568AL1616301085746873        
S/G/Y/R/B/O NT_017568AL1602721088067511AFMC027XH19128.009127.981 AL160272
S/G/Y/R/B/O NT_017568AL3547541089185413        
S/G/Y/R/B/O NT_017568AL4456631090340733        
S/G/Y/R/B/O NT_017568AL1588311092261993        
S/G/Y/R/B/O NT_017568AL3651951094155203GATA64G07  9127.981 AL365195


  NT_017568 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_017568AL4454401094738193        
S/G/Y/R/B/O NT_017568AL3555921097364463GATA116F11  9127.981 AL355592
S/G/Y/R/B/O NT_017568AL5897031098081023        
S/G/Y/R/B/O NT_017568AL1577801099062102AFM286YC59129.209127.981 AL157780
S/G/Y/R/B/O NT_017568AL5126021100129133        
S/G/Y/R/B/O NT_017568AL4453101100567303AFMB333YB99130.409129.741 AL445310
S/G/Y/R/B/O NT_017568AL3537731102200933        
S/G/Y/R/B/O NT_017568AL1388941104491513AFM193YG59130.409129.741 AL138894
S/G/Y/R/B/O NT_017568AL3536301104641273        
S/G/Y/R/B/O NT_017568AC0062881105455933        
S/G/Y/R/B/O NT_017568AL4456831107657113        
S/G/Y/R/B/O NT_017568AL3549311108933763        
S/G/Y/R/B/O NT_017568AL4419891110181913        
S/G/Y/R/B/O NT_017568AL3555891112461913AFM185XE39130.409130.521 AC006952, AL355589
S/G/Y/R/B/O NT_017568AL5925491113121973GATA65D11  9130.521 AC006952, AL592549
S/G/Y/R/B/O NT_017568AL3537361113912713        
S/G/Y/R/B/O NT_017568AL3918701115381433        
S/G/Y/R/B/O NT_017568AL5906421115825153        
S/G/Y/R/B/O NT_017568AL1388361116787163MFD77  9132.091AC015881, AC015881, AL138836, AL353761
S/G/Y/R/B/O NT_017568AL1388361117699543AFMB335XH19132.909132.091 AL138836
S/G/Y/R/B/O NT_017568AL1619111118401453        
S/G/Y/R/B/O NT_017568AC0158811119493211        
S/G/Y/R/B/O NT_017568 - AFM347ZF99130.409129.740 AC006239