Home    Genome Browser    BLAT Search    Help
  Chromosome 9 - Genetic Maps - Single Contig
 

Chromosome 9 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_008580
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008580AL353608600886523UT726  964.721 AL353608
S/G/Y/R/B/O NT_008580AL161457601054873        
S/G/Y/R/B/O NT_008580AL353616602409943AFMC013YH5963.40964.721 AL353616
S/G/Y/R/B/O NT_008580AL353616602846793AFMA119VG9963.40964.721 AL353616
S/G/Y/R/B/O NT_008580AL354794603958683        
S/G/Y/R/B/O NT_008580AL356219605591513AFMA070WH1963.40964.721 AL356219
S/G/Y/R/B/O NT_008580AL356219605923823AFMA142YD1963.40964.721 AL356219
S/G/Y/R/B/O NT_008580AL162730606652083        
S/G/Y/R/B/O NT_008580AL590238608345893        
S/G/Y/R/B/O NT_008580AL358113608782263        
S/G/Y/R/B/O NT_008580AL355140611343242AFMA223YC9963.40964.721 AL355140
S/G/Y/R/B/O NT_008580AL353693611890403        
S/G/Y/R/B/O NT_008580AL162421612507413        
S/G/Y/R/B/O NT_008580AL162412614388771D9S15  967.931 AC008248, AL162412
S/G/Y/R/B/O NT_008580AL603625615440503        
S/G/Y/R/B/O NT_008580AL591215616364202AFM280TH5964.50965.791 AC022857, AL591215
S/G/Y/R/B/O NT_008580AL606666617080343        
S/G/Y/R/B/O NT_008580AL392044617360551        
S/G/Y/R/B/O NT_008580AL158153619012613        
S/G/Y/R/B/O NT_008580AL162390619462723        
S/G/Y/R/B/O NT_008580AL442645621285993        
S/G/Y/R/B/O NT_008580AL358786622858913AFM144ZG7965.00966.321 AL358786
S/G/Y/R/B/O NT_008580AL159990624638773AFMA218YF5965.00966.321 AL159990
S/G/Y/R/B/O NT_008580AL356318625448233        
S/G/Y/R/B/O NT_008580AL592438626860623        
S/G/Y/R/B/O NT_008580AL161913627265753        
S/G/Y/R/B/O NT_008580AL160273628996833GATA7D12  966.321 AL160273
S/G/Y/R/B/O NT_008580AL391819630204063        
S/G/Y/R/B/O NT_008580AL392106632983643AFMA284ZF1965.00966.321 AL392106
S/G/Y/R/B/O NT_008580AL161732633327793        
S/G/Y/R/B/O NT_008580AL671309634700702        
S/G/Y/R/B/O NT_008580AL138751635840463        
S/G/Y/R/B/O NT_008580AL583829637798903        
S/G/Y/R/B/O NT_008580AL590311638274633        
S/G/Y/R/B/O NT_008580AL135924640273303AFMB017ZF5965.50966.861 AL135924
S/G/Y/R/B/O NT_008580AL445646641183813        
S/G/Y/R/B/O NT_008580AL596448641824013        
S/G/Y/R/B/O NT_008580AL449323642821073AFMB286XB5966.00967.391 AL449323
S/G/Y/R/B/O NT_008580AL591662643210493GGAA20D07  967.391 AL591662
S/G/Y/R/B/O NT_008580AL591662643297193AFMA054ZE1966.50967.931 AL591662
S/G/Y/R/B/O NT_008580AL590662644770683        
S/G/Y/R/B/O NT_008580AL162416645092393        
S/G/Y/R/B/O NT_008580AL591031645828483        
S/G/Y/R/B/O NT_008580AL359997647177453        
S/G/Y/R/B/O NT_008580AL449083648848483        
S/G/Y/R/B/O NT_008580AL355604650117932        
S/G/Y/R/B/O NT_008580AL451127651928033        
S/G/Y/R/B/O NT_008580AL512594653016613        
S/G/Y/R/B/O NT_008580AL627324654658533        
S/G/Y/R/B/O NT_008580AL513124654935402        


  NT_008580 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_008580AL512644656643063        
S/G/Y/R/B/O NT_008580AL603652658394163UT6023  967.931 AL603652
S/G/Y/R/B/O NT_008580AL357872659200913GATA28C02  967.931 AL357872
S/G/Y/R/B/O NT_008580AL355152659529043        
S/G/Y/R/B/O NT_008580AL355674660690553        
S/G/Y/R/B/O NT_008580AL137018662438293        
S/G/Y/R/B/O NT_008580AL158833664008973        
S/G/Y/R/B/O NT_008580AL354795664096672        
S/G/Y/R/B/O NT_008580AL390874666048573        
S/G/Y/R/B/O NT_008580AL158825666135623        
S/G/Y/R/B/O NT_008580AL133548667408613        
S/G/Y/R/B/O NT_008580AL353756668941533        
S/G/Y/R/B/O NT_008580AL158073670445783AFM224ZH10968.80970.331 AL158073
S/G/Y/R/B/O NT_008580AL158073671829643AFM331YH5968.80970.331 AC010828, AL158073
S/G/Y/R/B/O NT_008580AL353780672226413        
S/G/Y/R/B/O NT_008580AL160280673088793        
S/G/Y/R/B/O NT_008580AL157883674159103        
S/G/Y/R/B/O NT_008580AL359253676034163AFM287XD1966.00967.931 AL359253
S/G/Y/R/B/O NT_008580AL353607677783963        
S/G/Y/R/B/O NT_008580AL589653679797163AFMA288XH5971.60973.031 AL589653
S/G/Y/R/B/O NT_008580AL391868680208653        
S/G/Y/R/B/O NT_008580AL590664681210023        
S/G/Y/R/B/O NT_008580AL161626681872193        
S/G/Y/R/B/O NT_008580AL359314683690773        
S/G/Y/R/B/O NT_008580AL390239685187723AFMB073XC1971.60973.031 AL390239
S/G/Y/R/B/O NT_008580AL390239685774523AFMC007XG9971.60973.031 AL390239
S/G/Y/R/B/O NT_008580AL353637686264661        
S/G/Y/R/B/O NT_008580AL161789687858353GATA89A11  975.881 AL161789
S/G/Y/R/B/O NT_008580AL353710688360853        
S/G/Y/R/B/O NT_008580AL359204690184143AFM144YE9975.80976.671 AL359204
S/G/Y/R/B/O NT_008580AL158159690443093        
S/G/Y/R/B/O NT_008580AL353794692112153        
S/G/Y/R/B/O NT_008580AL359849692795713        
S/G/Y/R/B/O NT_008580AL355535692997823        
S/G/Y/R/B/O NT_008580AL160268695219953GATA89C08  977.561 AC012196, AL160268
S/G/Y/R/B/O NT_008580AL160278695761623        
S/G/Y/R/B/O NT_008580 - UT739  967.930AL671309, AC073124, AL671309
S/G/Y/R/B/O NT_008580 - UT458  967.934AL162731, AL391987, AL591926, AL627230, AC011967, AL162731, AL391987, AL591889, AL591926, AL627230