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Chromosome 9 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_029366
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029366AC0064301120643983AFMB022XB59132.909132.091 AC006430, AL354792
S/G/Y/R/B/O NT_029366AL1370681122071573        
S/G/Y/R/B/O NT_029366AL5131221123540863        
S/G/Y/R/B/O NT_029366AL1617841124629163        
S/G/Y/R/B/O NT_029366AL3596441125389753UT1231  9132.091 AC011969, AL359644
S/G/Y/R/B/O NT_029366AL3579361126507853        
S/G/Y/R/B/O NT_029366AL3652741128057223AFMA139XB99132.909132.091AL450285, AL353609, AL365274, AL450285
S/G/Y/R/B/O NT_029366AL4502851129262551        
S/G/Y/R/B/O NT_029366AL5962441129346123        
S/G/Y/R/B/O NT_029366AL4455871129780813        
S/G/Y/R/B/O NT_029366AL4426341131815773GATA154A06  9132.091 AL442634
S/G/Y/R/B/O NT_029366AL1624231132050863        
S/G/Y/R/B/O NT_029366AL1624241133574483AFMA061XD99132.909132.091 AL162424
S/G/Y/R/B/O NT_029366AL3596361135143293        
S/G/Y/R/B/O NT_029366AL1622541137081653        
S/G/Y/R/B/O NT_029366AC0063131138175793        
S/G/Y/R/B/O NT_029366AL3595121139256793        
S/G/Y/R/B/O NT_029366AC0070661139825633        
S/G/Y/R/B/O NT_029366AL3589461141713793        
S/G/Y/R/B/O NT_029366AL3653381141830393        
S/G/Y/R/B/O NT_029366AL3655041143312693        
S/G/Y/R/B/O NT_029366AL4454891144857813        
S/G/Y/R/B/O NT_029366AL1617901146596503        
S/G/Y/R/B/O NT_029366AC0107411147785461        
S/G/Y/R/B/O NT_029366AL3907741147977761        
S/G/Y/R/B/O NT_029366AL1582081149835993        
S/G/Y/R/B/O NT_029366AC0064501149919433        
S/G/Y/R/B/O NT_029366AL1580521151830601AFM308VB19136.209136.471 AL158052
S/G/Y/R/B/O NT_029366AL1580521152432771UT914  9135.851 AL158052
S/G/Y/R/B/O NT_029366AL4452841153400153        
S/G/Y/R/B/O NT_029366AL1627241153537753AFMA081WA99136.209135.851 AL162724
S/G/Y/R/B/O NT_029366AL1378461155705883UT7968  9135.851 AL137846
S/G/Y/R/B/O NT_029366AL3549791156616303AFMB312XA59136.209136.471AL669818, AL161456, AL354979, AL669818
S/G/Y/R/B/O NT_029366AL6698181157092872        
S/G/Y/R/B/O NT_029366AL1580751157739963        
S/G/Y/R/B/O NT_029366AL3549281158768633        
S/G/Y/R/B/O NT_029366AL4511251160533023        
S/G/Y/R/B/O NT_029366AL4459301162624823AFMB029XG19136.709136.471 AC009195, AL445930
S/G/Y/R/B/O NT_029366AL4459301162628693AFMA152ZG19136.709136.471 AC009195, AL445930
S/G/Y/R/B/O NT_029366AL3547101163496233        
S/G/Y/R/B/O NT_029366AL6272231164793311        
S/G/Y/R/B/O NT_029366AC0261551165449921        
S/G/Y/R/B/O NT_029366AL3596321165649553        
S/G/Y/R/B/O NT_029366AL1625841166603523        
S/G/Y/R/B/O NT_029366AL3580741168185303        
S/G/Y/R/B/O NT_029366AL6273031169256113        
S/G/Y/R/B/O NT_029366AL4451861171049541AFM225YH29136.709136.471AL589923, AL162387, AL445186, AL589923
S/G/Y/R/B/O NT_029366AL4451861171471961AFMB034YC19136.709136.471AL589923, AL162387, AL445186, AL589923
S/G/Y/R/B/O NT_029366AL5899231171479272        
S/G/Y/R/B/O NT_029366AL4456641172486143        


  NT_029366 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_029366AL1623911174096163        
S/G/Y/R/B/O NT_029366AC0064431175450353AFMA212XG99136.709136.471 AC006443
S/G/Y/R/B/O NT_029366AL3563091176426723        
S/G/Y/R/B/O NT_029366AL1619081177021813AFMB017WB59137.609137.351 AL161908
S/G/Y/R/B/O NT_029366AL1617311177911433        
S/G/Y/R/B/O NT_029366AL3549441179734951        
S/G/Y/R/B/O NT_029366AL1361081179956891        
S/G/Y/R/B/O NT_029366AL3600041180050473        
S/G/Y/R/B/O NT_029366AL3921051181852583        
S/G/Y/R/B/O NT_029366AL1361411182191353        
S/G/Y/R/B/O NT_029366AL1582071183469183        
S/G/Y/R/B/O NT_029366AL5922191185148813        
S/G/Y/R/B/O NT_029366AL5903691186560633AFMB045YH19143.209143.061 AL590369
S/G/Y/R/B/O NT_029366AL3910561187080513AFM077XA99142.709142.511 AC007779, AL391056
S/G/Y/R/B/O NT_029366AL3910561187713133AFMA205ZF19142.709142.511 AC007779
S/G/Y/R/B/O NT_029366AL3538031188700653UT1892  9142.511 AC073075, AL353803
S/G/Y/R/B/O NT_029366AL1617851189894013        
S/G/Y/R/B/O NT_029366AL1581511191267463UT6068  9141.691 AL158151
S/G/Y/R/B/O NT_029366AL5922111192233092        
S/G/Y/R/B/O NT_029366AL1601691193634583        
S/G/Y/R/B/O NT_029366AL3568621194874833        
S/G/Y/R/B/O NT_029366AL3576231196309643        
S/G/Y/R/B/O NT_029366AL4502631196683843        
S/G/Y/R/B/O NT_029366AL4452221199187453AFMB006XB59136.209136.471 AL445222
S/G/Y/R/B/O NT_029366AL4452221199546723ATA3H11  9136.471 AL445222
S/G/Y/R/B/O NT_029366AL3901161200493263        
S/G/Y/R/B/O NT_029366AL1624261201746893ATC2B11  9136.471AC007430, AC007430, AL162426
S/G/Y/R/B/O NT_029366AC0074301202297661        
S/G/Y/R/B/O NT_029366AL1625861202480002        
S/G/Y/R/B/O NT_029366AL1579351203067082        
S/G/Y/R/B/O NT_029366AL3602681204709093        
S/G/Y/R/B/O NT_029366AL5907081207195062AFMB032YB99141.109140.861 AC006312, AL590708
S/G/Y/R/B/O NT_029366AL5907221207727923        
S/G/Y/R/B/O NT_029366AL3590911207828453        
S/G/Y/R/B/O NT_029366AL4452871209652883        
S/G/Y/R/B/O NT_029366AL3564811210014043        
S/G/Y/R/B/O NT_029366AL3596781211750703        
S/G/Y/R/B/O NT_029366AL4419921212452113AFMA131YG99141.109140.861 AL441992, AL672142
S/G/Y/R/B/O NT_029366 - AFM206ZA99141.109140.860AL136108, AL136108, AL672142
S/G/Y/R/B/O NT_029366 - DBH  9142.510