Home    Genome Browser    BLAT Search    Help
  Chromosome 9 - Genetic Maps - Single Contig
 

Chromosome 9 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_023935
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023935AC024486698414611        
S/G/Y/R/B/O NT_023935AL354700698490983        
S/G/Y/R/B/O NT_023935AL353705698992193        
S/G/Y/R/B/O NT_023935AL353594700635913        
S/G/Y/R/B/O NT_023935AL592448701585823        
S/G/Y/R/B/O NT_023935AL445684701605763        
S/G/Y/R/B/O NT_023935AL592221702986673        
S/G/Y/R/B/O NT_023935AL592047704514943        
S/G/Y/R/B/O NT_023935AL354675707381543AFM025YB2977.70979.061 AL354675
S/G/Y/R/B/O NT_023935AL359642707810483        
S/G/Y/R/B/O NT_023935AL512634709016613        
S/G/Y/R/B/O NT_023935AL160166710257253AFMA121WH9978.40980.311 AL160166
S/G/Y/R/B/O NT_023935AL450243711324303        
S/G/Y/R/B/O NT_023935AL358975711979383        
S/G/Y/R/B/O NT_023935AL445252713941753        
S/G/Y/R/B/O NT_023935AL353813714138523        
S/G/Y/R/B/O NT_023935AL161912716068883AFM303XA9978.40979.771 AC023067, AL161912
S/G/Y/R/B/O NT_023935AL161912716959703AFMB321YF9979.30980.311 AC023067, AL161912
S/G/Y/R/B/O NT_023935AL161782717073423        
S/G/Y/R/B/O NT_023935AL160168717827412        
S/G/Y/R/B/O NT_023935AL161780719319433        
S/G/Y/R/B/O NT_023935AL354937721251203GATA21F05  980.311 AL354937
S/G/Y/R/B/O NT_023935AL390788721475723        
S/G/Y/R/B/O NT_023935AL160267722825403        
S/G/Y/R/B/O NT_023935AL353707724388553        
S/G/Y/R/B/O NT_023935AL138749725993383UT808  980.311 AL138749
S/G/Y/R/B/O NT_023935AL354682727961503UT5494  980.311 AL354682
S/G/Y/R/B/O NT_023935AL354682727961843GATA63A07  980.311 AL354682
S/G/Y/R/B/O NT_023935AL353666728589593        
S/G/Y/R/B/O NT_023935AL445672729207573        
S/G/Y/R/B/O NT_023935AL162397730317883        
S/G/Y/R/B/O NT_023935AL161727731517513        
S/G/Y/R/B/O NT_023935AL353682733098603        
S/G/Y/R/B/O NT_023935AL365190734737783UT5024  980.311 AC023268, AL355380
S/G/Y/R/B/O NT_023935AL591368734875593        
S/G/Y/R/B/O NT_023935AL158154735631462UT917  981.381 AL158154, AL355380
S/G/Y/R/B/O NT_023935AL158154735726032UT1416  981.921 AL158154, AL355380
S/G/Y/R/B/O NT_023935AL355985737222103        
S/G/Y/R/B/O NT_023935AL158047737851793        
S/G/Y/R/B/O NT_023935AL357032740326373GATA3D04  981.921 AL357032
S/G/Y/R/B/O NT_023935AL162726740982462        
S/G/Y/R/B/O NT_023935AL356490742920703        
S/G/Y/R/B/O NT_023935AL353774744007193ATA38G03  981.921 AL353774
S/G/Y/R/B/O NT_023935AL353774744354643AFMA137WF9978.40980.311 AL353774
S/G/Y/R/B/O NT_023935AL133391745943423AFM218XH10982.30981.921 AL133391
S/G/Y/R/B/O NT_023935AL359202746196583        
S/G/Y/R/B/O NT_023935AL499602747349303        
S/G/Y/R/B/O NT_023935AL671136749257513AFM157XB12982.40983.411AL137847, AL137847, AL671136
S/G/Y/R/B/O NT_023935AL137847749267703        
S/G/Y/R/B/O NT_023935AL161786751081982GATA22H04  984.901 AC012232, AL161786


  NT_023935 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_023935AL161786752018482GATA152H04  984.901 AC012232, AL161786
S/G/Y/R/B/O NT_023935AL353641752118183        
S/G/Y/R/B/O NT_023935AL450026752473953AFM015YA5983.90984.901 AL450026
S/G/Y/R/B/O NT_023935AL354920753274593        
S/G/Y/R/B/O NT_023935AL662787754961633        
S/G/Y/R/B/O NT_023935AL354733755822873AFMA058YH9983.90985.691 AL354733
S/G/Y/R/B/O NT_023935AC012279757453471        
S/G/Y/R/B/O NT_023935AL390838757713983        
S/G/Y/R/B/O NT_023935AL356134759651073        
S/G/Y/R/B/O NT_023935AL353787760528103        
S/G/Y/R/B/O NT_023935AL157886761344493        
S/G/Y/R/B/O NT_023935AL354692762894043        
S/G/Y/R/B/O NT_023935AL390777763978483        
S/G/Y/R/B/O NT_023935AL596132765787553        
S/G/Y/R/B/O NT_023935AL445532767009113        
S/G/Y/R/B/O NT_023935AL354897768705403        
S/G/Y/R/B/O NT_023935AL159991769985323        
S/G/Y/R/B/O NT_023935AL583827770538993AFMA155TE1986.60988.921 AL583827
S/G/Y/R/B/O NT_023935AL451132772334393GATA81C04  988.921 AL451132
S/G/Y/R/B/O NT_023935AL451131772678913        
S/G/Y/R/B/O NT_023935AL157882773956941AFMC028XH5986.60987.291 AL157882
S/G/Y/R/B/O NT_023935AL157882775102011UT7655  987.291 AL157882
S/G/Y/R/B/O NT_023935AL353743776790983UT1228  988.161 AL353743
S/G/Y/R/B/O NT_023935AL161453777044813        
S/G/Y/R/B/O NT_023935AL161447777374163        
S/G/Y/R/B/O NT_023935AL450106778955313        
S/G/Y/R/B/O NT_023935AL137849779427523        
S/G/Y/R/B/O NT_023935AL353678780724363        
S/G/Y/R/B/O NT_023935AL158828781738363UT2103  988.921 AL158828
S/G/Y/R/B/O NT_023935AL353613783551463        
S/G/Y/R/B/O NT_023935AL159996784653463AFMA311YC1986.60990.401 AL159996
S/G/Y/R/B/O NT_023935AL158149786412013        
S/G/Y/R/B/O NT_023935AL513318787631882AFM343TD9988.20990.401 AL513318
S/G/Y/R/B/O NT_023935AL158205788925933        
S/G/Y/R/B/O NT_023935AL136367789587643        
S/G/Y/R/B/O NT_023935AL353752790335952        
S/G/Y/R/B/O NT_023935AL161787792095163        
S/G/Y/R/B/O NT_023935AL591852793273273        
S/G/Y/R/B/O NT_023935AL160279794324693AFM183XH10990.60991.871 AL160279