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Chromosome 9 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_033218 NT_008413 NT_027081 NT_023974 NT_030040 NT_033214 NT_030759 NT_030753
NT_033213 NT_033210 NT_008389 NT_033219 NT_033217 NT_029359 NT_033209 NT_033206
NT_033208 NT_033212 NT_033205 NT_033203 NT_031832 NT_033211 NT_033207 NT_008580
NT_023935 NT_028278 NT_023975 NT_023946 NT_023932 NT_024010 NT_033202 NT_008476
NT_033216 NT_008470 NT_008438 NT_017568 NT_029366 NT_008338 NT_031835 NT_017539
NT_008554 NT_023969 NT_030058 NT_019501 NT_033215 NT_024000 NT_023929 NT_023989


  NT_030040
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_030040AL591543319256601        
S/G/Y/R/B/O NT_030040AL353728319373553        
S/G/Y/R/B/O NT_030040AL160407321030943        
S/G/Y/R/B/O NT_030040AL161444322534473GATA71E08  958.261 AL161444
S/G/Y/R/B/O NT_030040AL451138322792633        
S/G/Y/R/B/O NT_030040AL589825323945363        
S/G/Y/R/B/O NT_030040AL513167324501143        
S/G/Y/R/B/O NT_030040AL353573326520933GATA5E06  958.261 AL353573
S/G/Y/R/B/O NT_030040AL161783326825483        
S/G/Y/R/B/O NT_030040AL353671327922403        
S/G/Y/R/B/O NT_030040AL589642329458253        
S/G/Y/R/B/O NT_030040AL157884330368072        
S/G/Y/R/B/O NT_030040AL353717332117393        
S/G/Y/R/B/O NT_030040AL162590333302723        
S/G/Y/R/B/O NT_030040AL161445334640343AFM155XH4957.30958.801 AL161445
S/G/Y/R/B/O NT_030040AL161445334849933AFMB324XG1957.30958.801 AL161445
S/G/Y/R/B/O NT_030040AL161445335014803AFM136XC5957.30958.261 AL161445
S/G/Y/R/B/O NT_030040AL356472335879423        
S/G/Y/R/B/O NT_030040AL356218336845353        
S/G/Y/R/B/O NT_030040AL139008339494883AFMA060ZG9957.90959.341 AF029308, AL139008
S/G/Y/R/B/O NT_030040AL356489339833483        
S/G/Y/R/B/O NT_030040AL358573341138873        
S/G/Y/R/B/O NT_030040AL139113341877813AFMA345XB1957.90959.341 AL139113
S/G/Y/R/B/O NT_030040AL354989343181653        
S/G/Y/R/B/O NT_030040AL160051344681553        
S/G/Y/R/B/O NT_030040AL353662345249443AFMA283XC9957.90959.341 AL353662
S/G/Y/R/B/O NT_030040AL356494346637853        
S/G/Y/R/B/O NT_030040AL160270347455351        
S/G/Y/R/B/O NT_030040AL450283349426491        
S/G/Y/R/B/O NT_030040AL162231349724663        
S/G/Y/R/B/O NT_030040AL589645351588993        
S/G/Y/R/B/O NT_030040AL355377352052221        
S/G/Y/R/B/O NT_030040AL353795355123723UT5110  951.211AL354669, AL353795, AL354669
S/G/Y/R/B/O NT_030040AL354669355532713        
S/G/Y/R/B/O NT_030040AL160274356239641        
S/G/Y/R/B/O NT_030040AL592145357660663        
S/G/Y/R/B/O NT_030040AL133476357699512        
S/G/Y/R/B/O NT_030040AL357874359217773        
S/G/Y/R/B/O NT_030040AL133410360081053        
S/G/Y/R/B/O NT_030040AL135841362885953AFMA273XA5958.50959.871 AL135841
S/G/Y/R/B/O NT_030040AL138834363031693        
S/G/Y/R/B/O NT_030040AL158830364264823        
S/G/Y/R/B/O NT_030040AL161792366178183        
S/G/Y/R/B/O NT_030040AL354935367212613AFMA183ZA9957.90959.341 AL354935
S/G/Y/R/B/O NT_030040AL354932369547933AFMC003ZA5958.50959.871 AL354932
S/G/Y/R/B/O NT_030040AL442063369723603        
S/G/Y/R/B/O NT_030040AL450267371304583MFD85A  960.591 AL158148, AL450267, AP002388
S/G/Y/R/B/O NT_030040AL161781372565763UT6556  954.121 AL161781, AP002388
S/G/Y/R/B/O NT_030040AL603912373923993        
S/G/Y/R/B/O NT_030040AL512604375501513AFMA044TA5959.90961.381 AL512604


  NT_030040 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_030040AL358118375803623        
S/G/Y/R/B/O NT_030040AL158155376035273        
S/G/Y/R/B/O NT_030040AL158156377938633        
S/G/Y/R/B/O NT_030040AL513165378342162        
S/G/Y/R/B/O NT_030040AL591470380271923        
S/G/Y/R/B/O NT_030040AL138752380858023        
S/G/Y/R/B/O NT_030040AL583849382730733        
S/G/Y/R/B/O NT_030040AL161448383192463        
S/G/Y/R/B/O NT_030040AL445986384821033        
S/G/Y/R/B/O NT_030040AL135785386236033GATA124G05  963.651 AL135785
S/G/Y/R/B/O NT_030040AL390794387651833        
S/G/Y/R/B/O NT_030040AL390726388141743        
S/G/Y/R/B/O NT_030040 - AFMA205ZD9958.40959.870AL158830, AF317635, AL158830
S/G/Y/R/B/O NT_030040 - UT792  963.650  
S/G/Y/R/B/O NT_030040 - UT840  963.650