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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_006051 | AC105415 | 4211334 | 3 | chr4 | NT_006051 | AC110814 | 4397182 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006051 | AC105415 | 4211334 | 3 | chr4 | NT_037624 | AC011744 | 4011738 | 3 | 149803 | 0 | 0 | 149803 |
S/G/Y/R/B/O |
NT_006051 | AC105415 | 4211334 | 3 |   |   | AC015709 | 4011738 | | 109117 | 12503 | 20995 | 142615 |
S/G/Y/R/B/O |
NT_006051 | AC105415 | 4211334 | 3 |   |   | AF276255 | 4397182 | | 128232 | 0 | 3211 | 131443 |
S/G/Y/R/B/O |
NT_006051 | AC110814 | 4397182 | 3 | chr4 | NT_006051 | AC013725 | 4532905 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006051 | AC013725 | 4532905 | 3 | chr4 | NT_006051 | AC109359 | 4694953 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006051 | AC013725 | 4532905 | 3 |   |   | AC025073 | 4211334 | | 13367 | 2089 | 4635 | 20091 |
S/G/Y/R/B/O |
NT_006051 | AC013725 | 4532905 | 3 |   |   | AC041016 | 4211334 | | 12319 | 1057 | 1436 | 14812 |
S/G/Y/R/B/O |
NT_006051 | AC013725 | 4532905 | 3 |   |   | AC114775 | 4397182 | | 53928 | 0 | 0 | 53928 |
S/G/Y/R/B/O |
NT_006051 | AC109359 | 4694953 | 3 | chr4 | NT_006051 | AC092437 | 4827850 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006051 | AC109359 | 4694953 | 3 |   |   | AC025073 | 4532905 | | 109941 | 5124 | 12296 | 127361 |
S/G/Y/R/B/O |
NT_006051 | AC109359 | 4694953 | 3 |   |   | AC041016 | 4532905 | | 98312 | 4131 | 18714 | 121157 |
S/G/Y/R/B/O |
NT_006051 | AC109359 | 4694953 | 3 |   |   | AC114754 | 4827850 | | 74732 | 0 | 14332 | 89064 |
S/G/Y/R/B/O |
NT_006051 | AC092437 | 4827850 | 3 | chr4 | NT_006051 | AC108139 | 5031433 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_006051 | AC092437 | 4827850 | 3 |   |   | AC025073 | 4827850 | | 10551 | 3669 | 0 | 14220 |
S/G/Y/R/B/O |
NT_006051 | AC092437 | 4827850 | 3 |   |   | AC041016 | 4827850 | | 12486 | 0 | 0 | 12486 |
S/G/Y/R/B/O |
NT_006051 | AC092437 | 4827850 | 3 |   |   | AC114754 | 4694953 | | 89850 | 0 | 0 | 89850 |
S/G/Y/R/B/O |
NT_006051 | AC108139 | 5031433 | 3 | chr4 | NT_006051 | AC096740 | 5091356 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006051 | AC096740 | 5091356 | 3 | chr4 | NT_006051 | AC107395 | 5286215 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_006051 | AC107395 | 5286215 | 3 | chr4 | NT_006051 | AC092665 | 5298679 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006051 | AC092665 | 5298679 | 3 | chr4 | NT_006051 | AC004664 | 5435183 | 3 | 0 | 1975 | 0 | 1975 |
S/G/Y/R/B/O |
NT_006051 | AC004664 | 5435183 | 3 | chr4 | NT_006051 | AC114738 | 5605280 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006051 | AC004664 | 5435183 | 3 |   |   | AC004661 | 5435183 | | 79128 | 4081 | 6263 | 89472 |
S/G/Y/R/B/O |
NT_006051 | AC114738 | 5605280 | 3 | chr4 | NT_006051 | AC116613 | 5719017 | 1 | 38217 | 0 | 0 | 38217 |
S/G/Y/R/B/O |
NT_006051 | AC114738 | 5605280 | 3 |   |   | AC008130 | 5298679 | | 68459 | 1774 | 18122 | 88355 |
S/G/Y/R/B/O |
NT_006051 | AC114738 | 5605280 | 3 |   |   | AC008130 | 5298679 | | 68459 | 1774 | 18122 | 88355 |
S/G/Y/R/B/O |
NT_006051 | AC116613 | 5719017 | 1 | chr4 | NT_006051 | AC092442 | 5759829 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006051 | AC116613 | 5719017 | 1 | chr4 | NT_006051 | AC005141 | 6058819 | 1 | 18986 | 0 | 0 | 18986 |
S/G/Y/R/B/O |
NT_006051 | AC116613 | 5719017 | 1 | chr4 | NT_006051 | AC105915 | 5855108 | 3 | 97404 | 1957 | 0 | 99361 |
S/G/Y/R/B/O |
NT_006051 | AC116613 | 5719017 | 1 |   |   | AC004795 | 5719017 | | 12407 | 2677 | 0 | 15084 |
S/G/Y/R/B/O |
NT_006051 | AC116613 | 5719017 | 1 |   |   | AC005289 | 6058819 | | 38415 | 1957 | 36548 | 76920 |
S/G/Y/R/B/O |
NT_006051 | AC116613 | 5719017 | 1 |   |   | AC008130 | 6058819 | | 44750 | 0 | 41076 | 85826 |
S/G/Y/R/B/O |
NT_006051 | AC116613 | 5719017 | 1 |   |   | AC022529 | 6058819 | | 20946 | 8071 | 43896 | 72913 |
S/G/Y/R/B/O |
NT_006051 | AC092442 | 5759829 | 1 | chr4 | NT_006051 | AC109593 | 5845882 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_006051 | AC092442 | 5759829 | 1 | chr4 | NT_006051 | AC004670 | 6136543 | 1 | 71149 | 3966 | 39503 | 114618 |
S/G/Y/R/B/O |
NT_006051 | AC092442 | 5759829 | 1 | chr4 | NT_006051 | AC005141 | 6058819 | 1 | 61219 | 6018 | 1183 | 68420 |
S/G/Y/R/B/O |
NT_006051 | AC092442 | 5759829 | 1 |   |   | AC004618 | 5605280 | | 61230 | 2454 | 25813 | 89497 |
S/G/Y/R/B/O |
NT_006051 | AC092442 | 5759829 | 1 |   |   | AC004624 | 5605280 | | 68445 | 0 | 87637 | 156082 |
S/G/Y/R/B/O |
NT_006051 | AC109593 | 5845882 | 3 | chr4 | NT_006051 | AC105915 | 5855108 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_006051 | AC109593 | 5845882 | 3 | chr4 | NT_006051 | AC005141 | 6058819 | 1 | 11201 | 0 | 0 | 11201 |
S/G/Y/R/B/O |
NT_006051 | AC109593 | 5845882 | 3 |   |   | AC004624 | 5845882 | | 11206 | 0 | 0 | 11206 |
S/G/Y/R/B/O |
NT_006051 | AC105915 | 5855108 | 3 | chr4 | NT_006051 | AC005141 | 6058819 | 1 | 77976 | 1934 | 0 | 79910 |
S/G/Y/R/B/O |
NT_006051 | AC105915 | 5855108 | 3 | chr4 | NT_006051 | AC116613 | 5719017 | 1 | 97404 | 1957 | 0 | 99361 |
S/G/Y/R/B/O |
NT_006051 | AC105915 | 5855108 | 3 |   |   | AC004795 | 5855108 | | 21280 | 4905 | 1392 | 27577 |
S/G/Y/R/B/O |
NT_006051 | AC105915 | 5855108 | 3 |   |   | AC005289 | 6058819 | | 102172 | 0 | 36655 | 138827 |
S/G/Y/R/B/O |
NT_006051 | AC105915 | 5855108 | 3 |   |   | AC022529 | 6058819 | | 31652 | 8836 | 34955 | 75443 |
S/G/Y/R/B/O |
NT_006051 | AC005141 | 6058819 | 1 | chr4 | NT_006051 | AC004670 | 6136543 | 1 | 27803 | 4670 | 1857 | 34330 |
S/G/Y/R/B/O |
NT_006051 | AC005141 | 6058819 | 1 | chr4 | NT_006051 | AC092442 | 5759829 | 1 | 61219 | 6018 | 1183 | 68420 |
S/G/Y/R/B/O |
NT_006051 | AC005141 | 6058819 | 1 | chr4 | NT_006051 | AC109593 | 5845882 | 3 | 11201 | 0 | 0 | 11201 |
S/G/Y/R/B/O |
NT_006051 | AC005141 | 6058819 | 1 | chr4 | NT_006051 | AC116613 | 5719017 | 1 | 18986 | 0 | 0 | 18986 |
S/G/Y/R/B/O |
NT_006051 | AC005141 | 6058819 | 1 |   |   | AC004624 | 5719017 | | 76978 | 6017 | 1183 | 84178 |
S/G/Y/R/B/O |
NT_006051 | AC005141 | 6058819 | 1 |   |   | AC004795 | 6136543 | | 11865 | 4905 | 1392 | 18162 |
S/G/Y/R/B/O |
NT_006051 | AC005141 | 6058819 | 1 |   |   | AC005289 | 6136543 | | 60515 | 3822 | 0 | 64337 |
S/G/Y/R/B/O |
NT_006051 | AC005141 | 6058819 | 1 |   |   | AC022529 | 6136543 | | 23147 | 5360 | 15132 | 43639 |
S/G/Y/R/B/O |
NT_006051 | AC004670 | 6136543 | 1 | chr4 | NT_006051 | AC113615 | 6170332 | 1 | 40748 | 3063 | 0 | 43811 |
S/G/Y/R/B/O |
NT_006051 | AC004670 | 6136543 | 1 | chr4 | NT_006051 | AC092442 | 5759829 | 1 | 71149 | 3966 | 39503 | 114618 |
S/G/Y/R/B/O |
NT_006051 | AC004670 | 6136543 | 1 |   |   | AC004618 | 5719017 | | 84683 | 5244 | 31833 | 121760 |
S/G/Y/R/B/O |
NT_006051 | AC004670 | 6136543 | 1 |   |   | AC004624 | 5719017 | | 73507 | 3966 | 32348 | 109821 |
S/G/Y/R/B/O |
NT_006051 | AC113615 | 6170332 | 1 | chr4 | NT_006051 | AC116317 | 6279154 | 1 | 58707 | 0 | 626 | 59333 |
S/G/Y/R/B/O |
NT_006051 | AC113615 | 6170332 | 1 |   |   | AC004618 | 6170332 | | 48555 | 0 | 8559 | 57114 |
S/G/Y/R/B/O |
NT_006051 | AC113615 | 6170332 | 1 |   |   | AC004689 | 6136543 | | 26242 | 0 | 0 | 26242 |
S/G/Y/R/B/O |
NT_006051 | AC116317 | 6279154 | 1 | chr4 | NT_006051 | AC004599 | 6450843 | 1 | 45698 | 0 | 73615 | 119313 |
S/G/Y/R/B/O |
NT_006051 | AC116317 | 6279154 | 1 |   |   | AC004689 | 6450843 | | 91748 | 0 | 16690 | 108438 |
S/G/Y/R/B/O |
NT_006051 | AC004599 | 6450843 | 1 | chr4 | NT_006051 | AC122939 | 6520363 | 3 | 14211 | 0 | 0 | 14211 |
S/G/Y/R/B/O |
NT_006051 | AC004599 | 6450843 | 1 | chr4 | NT_006051 | AC114815 | 6534574 | 1 | 54918 | 1263 | 0 | 56181 |
S/G/Y/R/B/O |
NT_006051 | AC004599 | 6450843 | 1 |   |   | AC004689 | 6520363 | | 45750 | 0 | 93019 | 138769 |
S/G/Y/R/B/O |
NT_006051 | AC004599 | 6450843 | 1 |   |   | AC125286 | 6520363 | | 14211 | 0 | 0 | 14211 |
S/G/Y/R/B/O |
NT_006051 | AC122939 | 6520363 | 3 | chr4 | NT_006051 | AC114815 | 6534574 | 1 | 0 | 1987 | 0 | 1987 |
S/G/Y/R/B/O |
NT_006051 | AC122939 | 6520363 | 3 |   |   | AC125286 | 6279154 | | 14211 | 0 | 0 | 14211 |
S/G/Y/R/B/O |
NT_006051 | AC114815 | 6534574 | 1 | chr4 | NT_006051 | AC093323 | 6655428 | 3 | 105465 | 885 | 0 | 106350 |
S/G/Y/R/B/O |
NT_006051 | AC114815 | 6534574 | 1 | chr4 | NT_006051 | AC004599 | 6450843 | 1 | 54918 | 1263 | 0 | 56181 |
S/G/Y/R/B/O |
NT_006051 | AC114815 | 6534574 | 1 |   |   | AC004480 | 6279154 | | 105760 | 885 | 0 | 106645 |
S/G/Y/R/B/O |
NT_006051 | AC114815 | 6534574 | 1 |   |   | AC114805 | 6655428 | | 121624 | 0 | 26297 | 147921 |
S/G/Y/R/B/O |
NT_006051 | AC093323 | 6655428 | 3 | chr4 | NT_006051 | AC134920 | 6851104 | 1 | 47894 | 0 | 12653 | 60547 |
S/G/Y/R/B/O |
NT_006051 | AC093323 | 6655428 | 3 |   |   | AC004480 | 6520363 | | 22913 | 0 | 166924 | 189837 |
S/G/Y/R/B/O |
NT_006051 | AC093323 | 6655428 | 3 |   |   | AC114805 | 6520363 | | 105255 | 774 | 28818 | 134847 |
S/G/Y/R/B/O |
NT_006051 | AC134920 | 6851104 | 1 | chr4 | NT_006051 | AC106045 | 6852385 | 3 | 0 | 0 | 102501 | 102501 |
S/G/Y/R/B/O |
NT_006051 | AC134920 | 6851104 | 1 |   |   | AC004480 | 6851104 | | 47894 | 0 | 16928 | 64822 |
S/G/Y/R/B/O |
NT_006051 | AC134920 | 6851104 | 1 |   |   | AC004604 | 6851104 | | 64234 | 1833 | 25882 | 91949 |
S/G/Y/R/B/O |
NT_006051 | AC134920 | 6851104 | 1 |   |   | AC114805 | 6852385 | | 12031 | 408 | 772 | 13211 |
S/G/Y/R/B/O |
NT_006051 | AC106045 | 6852385 | 3 | chr4 | NT_006051 | AC092463 | 7035388 | 1 | 54162 | 0 | 0 | 54162 |
S/G/Y/R/B/O |
NT_006051 | AC106045 | 6852385 | 3 |   |   | AC004555 | 6852385 | | 24864 | 0 | 28620 | 53484 |
S/G/Y/R/B/O |
NT_006051 | AC106045 | 6852385 | 3 |   |   | AC004604 | 6852385 | | 96364 | 6365 | 54787 | 157516 |
S/G/Y/R/B/O |
NT_006051 | AC106045 | 6852385 | 3 |   |   | AC093508 | 7035388 | | 62326 | 0 | 0 | 62326 |
S/G/Y/R/B/O |
NT_006051 | AC092463 | 7035388 | 1 | chr4 | NT_006051 | AC097382 | 7109638 | 3 | 70464 | 0 | 0 | 70464 |
S/G/Y/R/B/O |
NT_006051 | AC092463 | 7035388 | 1 |   |   | AC004524 | 6851104 | | 55740 | 4843 | 9508 | 70091 |
S/G/Y/R/B/O |
NT_006051 | AC092463 | 7035388 | 1 |   |   | AC004555 | 6851104 | | 29381 | 0 | 97357 | 126738 |
S/G/Y/R/B/O |
NT_006051 | AC092463 | 7035388 | 1 |   |   | AC004604 | 6851104 | | 28035 | 5198 | 8894 | 42127 |
S/G/Y/R/B/O |
NT_006051 | AC092463 | 7035388 | 1 |   |   | AC093508 | 6851104 | | 22563 | 0 | 19957 | 42520 |
S/G/Y/R/B/O |
NT_006051 | AC097382 | 7109638 | 3 | chr4 | NT_006051 | AC112710 | 7320153 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006051 | AC097382 | 7109638 | 3 |   |   | AC004394 | 6852385 | | 46935 | 4814 | 14509 | 66258 |
S/G/Y/R/B/O |
NT_006051 | AC097382 | 7109638 | 3 |   |   | AC004524 | 6852385 | | 25945 | 0 | 6440 | 32385 |
S/G/Y/R/B/O |
NT_006051 | AC097382 | 7109638 | 3 |   |   | AC004579 | 6852385 | | 30898 | 3165 | 22861 | 56924 |
S/G/Y/R/B/O |
NT_006051 | AC097382 | 7109638 | 3 |   |   | AC004580 | 6852385 | | 66369 | 0 | 929 | 67298 |
S/G/Y/R/B/O |
NT_006051 | AC112710 | 7320153 | 3 | chr4 | NT_006051 | AC080003 | 7392674 | 3 | 0 | 542 | 0 | 542 |
S/G/Y/R/B/O |
NT_006051 | AC112710 | 7320153 | 3 |   |   | AC004579 | 7320153 | | 37981 | 0 | 8662 | 46643 |
S/G/Y/R/B/O |
NT_006051 | AC112710 | 7320153 | 3 |   |   | AC004580 | 7320153 | | 55845 | 0 | 0 | 55845 |
S/G/Y/R/B/O |
NT_006051 | AC112710 | 7320153 | 3 |   |   | AC026590 | 6450843 | | 54240 | 4972 | 5239 | 64451 |
S/G/Y/R/B/O |
NT_006051 | AC080003 | 7392674 | 3 | chr4 | NT_006051 | AC116316 | 7580067 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006051 | AC080003 | 7392674 | 3 |   |   | AC004578 | 7109638 | | 74571 | 0 | 6231 | 80802 |
S/G/Y/R/B/O |
NT_006051 | AC080003 | 7392674 | 3 |   |   | AC006235 | 7109638 | | 134272 | 0 | 0 | 134272 |
S/G/Y/R/B/O |
NT_006051 | AC080003 | 7392674 | 3 |   |   | AC026590 | 7109638 | | 101906 | 0 | 15006 | 116912 |
S/G/Y/R/B/O |
NT_006051 | AC080003 | 7392674 | 3 |   |   | AC113156 | 7320153 | | 51701 | 4229 | 27913 | 83843 |
S/G/Y/R/B/O |
NT_006051 | AC116316 | 7580067 | 3 | chr4 | NT_006051 | AC004169 | 7708431 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006051 | AC116316 | 7580067 | 3 |   |   | AC004578 | 7708431 | | 83048 | 0 | 0 | 83048 |
S/G/Y/R/B/O |
NT_006051 | AC116316 | 7580067 | 3 |   |   | AC004630 | 7708431 | | 99898 | 5679 | 8550 | 114127 |
S/G/Y/R/B/O |
NT_006051 | AC116316 | 7580067 | 3 |   |   | AC113156 | 7392674 | | 76126 | 3722 | 8964 | 88812 |
S/G/Y/R/B/O |
NT_006051 | AC004169 | 7708431 | 3 | chr4 | NT_006051 | AC112254 | 7896236 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_006051 | AC004169 | 7708431 | 3 |   |   | AC004479 | 7392674 | | 45969 | 15217 | 13325 | 74511 |
S/G/Y/R/B/O |
NT_006051 | AC004169 | 7708431 | 3 |   |   | AC004630 | 7392674 | | 24282 | 4140 | 0 | 28422 |
S/G/Y/R/B/O |
NT_006051 | AC112254 | 7896236 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_006051 | AC112254 | 7896236 | 3 |   |   | AC004479 | 7708431 | | 40636 | 0 | 0 | 40636 |
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