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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_037627 | AC079921 | 39128856 | 1 | chr4 | NT_037627 | AC093855 | 39316914 | 3 | 23067 | 0 | 0 | 23067 |
S/G/Y/R/B/O |
NT_037627 | AC079921 | 39128856 | 1 |   |   | AC010925 | 39128856 | | 79091 | 0 | 49542 | 128633 |
S/G/Y/R/B/O |
NT_037627 | AC079921 | 39128856 | 1 |   |   | AC024388 | 39128856 | | 23583 | 4664 | 1194 | 29441 |
S/G/Y/R/B/O |
NT_037627 | AC093855 | 39316914 | 3 | chr4 | NT_037627 | AC023135 | 39505330 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037627 | AC093855 | 39316914 | 3 |   |   | AC010925 | 38945022 | | 32217 | 0 | 8696 | 40913 |
S/G/Y/R/B/O |
NT_037627 | AC023135 | 39505330 | 3 | chr4 | NT_037627 | AC021148 | 39612215 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037627 | AC023135 | 39505330 | 3 |   |   | AC069481 | 39612215 | | 13143 | 0 | 343 | 13486 |
S/G/Y/R/B/O |
NT_037627 | AC021148 | 39612215 | 3 | chr4 | NT_037627 | AC105427 | 39734317 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037627 | AC021148 | 39612215 | 3 |   |   | AC069481 | 39505330 | | 40722 | 9347 | 6862 | 56931 |
S/G/Y/R/B/O |
NT_037627 | AC105427 | 39734317 | 3 | chr4 | NT_037627 | AC108471 | 39789257 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037627 | AC105427 | 39734317 | 3 |   |   | AC069481 | 39612215 | | 23112 | 1479 | 1156 | 25747 |
S/G/Y/R/B/O |
NT_037627 | AC108471 | 39789257 | 3 | chr4 | NT_037627 | AC105287 | 39928699 | 1 | 85914 | 0 | 1070 | 86984 |
S/G/Y/R/B/O |
NT_037627 | AC108471 | 39789257 | 3 | chr4 | NT_037627 | AC023006 | 39981607 | 1 | 28307 | 4743 | 6363 | 39413 |
S/G/Y/R/B/O |
NT_037627 | AC108471 | 39789257 | 3 |   |   | AC027207 | 39981607 | | 30618 | 2315 | 12424 | 45357 |
S/G/Y/R/B/O |
NT_037627 | AC105287 | 39928699 | 1 | chr4 | NT_037627 | AC023006 | 39981607 | 1 | 80633 | 9748 | 17860 | 108241 |
S/G/Y/R/B/O |
NT_037627 | AC105287 | 39928699 | 1 |   |   | AC022862 | 39734317 | | 43930 | 6969 | 4102 | 55001 |
S/G/Y/R/B/O |
NT_037627 | AC105287 | 39928699 | 1 |   |   | AC027207 | 39981607 | | 53547 | 16230 | 47221 | 116998 |
S/G/Y/R/B/O |
NT_037627 | AC023006 | 39981607 | 1 | chr4 | NT_037627 | AC113150 | 40063133 | 3 | 13125 | 8615 | 6910 | 28650 |
S/G/Y/R/B/O |
NT_037627 | AC023006 | 39981607 | 1 | chr4 | NT_037627 | AC108471 | 39789257 | 3 | 28307 | 4743 | 6363 | 39413 |
S/G/Y/R/B/O |
NT_037627 | AC023006 | 39981607 | 1 |   |   | AC022862 | 40063133 | | 45956 | 20219 | 11679 | 77854 |
S/G/Y/R/B/O |
NT_037627 | AC023006 | 39981607 | 1 |   |   | AC027207 | 40063133 | | 46846 | 8559 | 37147 | 92552 |
S/G/Y/R/B/O |
NT_037627 | AC113150 | 40063133 | 3 | chr4 | NT_037627 | AC098591 | 40161989 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037627 | AC113150 | 40063133 | 3 |   |   | AC022862 | 40063133 | | 40220 | 13938 | 18527 | 72685 |
S/G/Y/R/B/O |
NT_037627 | AC113150 | 40063133 | 3 |   |   | AC068352 | 39981607 | | 46326 | 0 | 9236 | 55562 |
S/G/Y/R/B/O |
NT_037627 | AC113150 | 40063133 | 3 |   |   | AC090081 | 39981607 | | 13383 | 7628 | 0 | 21011 |
S/G/Y/R/B/O |
NT_037627 | AC098591 | 40161989 | 3 | chr4 | NT_037627 | AC095057 | 40339730 | 1 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037627 | AC098591 | 40161989 | 3 | chr4 | NT_037627 | AC046162 | 40526757 | 1 | 45144 | 21521 | 2089 | 68754 |
S/G/Y/R/B/O |
NT_037627 | AC098591 | 40161989 | 3 |   |   | AC068352 | 40526757 | | 14994 | 13785 | 4749 | 33528 |
S/G/Y/R/B/O |
NT_037627 | AC098591 | 40161989 | 3 |   |   | AC090081 | 40526757 | | 25757 | 23349 | 40973 | 90079 |
S/G/Y/R/B/O |
NT_037627 | AC095057 | 40339730 | 1 | chr4 | NT_037627 | AC046162 | 40526757 | 1 | 40784 | 1828 | 3458 | 46070 |
S/G/Y/R/B/O |
NT_037627 | AC095057 | 40339730 | 1 |   |   | AC068340 | 38200981 | | 102631 | 9140 | 33061 | 144832 |
S/G/Y/R/B/O |
NT_037627 | AC046162 | 40526757 | 1 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_037627 | AC046162 | 40526757 | 1 | chr4 | NT_037627 | AC098591 | 40161989 | 3 | 45144 | 21521 | 2089 | 68754 |
S/G/Y/R/B/O |
NT_037627 | AC046162 | 40526757 | 1 |   |   | AC068340 | 36620435 | | 26843 | 1648 | 8898 | 37389 |
S/G/Y/R/B/O |
NT_037627 | AC046162 | 40526757 | 1 |   |   | AC090081 | 36620435 | | 13499 | 23386 | 15408 | 52293 |
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