|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_006258 | AC093748 | 151486481 | 1 | chr4 | NT_006258 | AC092612 | 151597679 | 3 | 18971 | 0 | 46654 | 65625 |
S/G/Y/R/B/O |
NT_006258 | AC092612 | 151597679 | 3 | chr4 | NT_006258 | AC097373 | 151743385 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC097373 | 151743385 | 3 | chr4 | NT_006258 | AC110813 | 151886965 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC110813 | 151886965 | 3 | chr4 | NT_006258 | AC092544 | 152002132 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006258 | AC092544 | 152002132 | 3 | chr4 | NT_006258 | AC104796 | 152159395 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_006258 | AC092544 | 152002132 | 3 |   |   | AC018778 | 151743385 | | 131157 | 10171 | 0 | 141328 |
S/G/Y/R/B/O |
NT_006258 | AC092544 | 152002132 | 3 |   |   | AL391543 | 152159395 | | 50335 | 0 | 10751 | 61086 |
S/G/Y/R/B/O |
NT_006258 | AC104796 | 152159395 | 3 | chr4 | NT_006258 | AC079794 | 152326501 | 1 | 47040 | 0 | 0 | 47040 |
S/G/Y/R/B/O |
NT_006258 | AC104796 | 152159395 | 3 |   |   | AC009793 | 152159395 | | 40870 | 7617 | 15719 | 64206 |
S/G/Y/R/B/O |
NT_006258 | AC104796 | 152159395 | 3 |   |   | AC011122 | 152159395 | | 44164 | 5154 | 22424 | 71742 |
S/G/Y/R/B/O |
NT_006258 | AC079794 | 152326501 | 1 | chr4 | NT_006258 | AC095055 | 152373014 | 3 | 10000 | 0 | 67540 | 77540 |
S/G/Y/R/B/O |
NT_006258 | AC079794 | 152326501 | 1 |   |   | AC009793 | 152002132 | | 19888 | 3576 | 12218 | 35682 |
S/G/Y/R/B/O |
NT_006258 | AC079794 | 152326501 | 1 |   |   | AC011122 | 152002132 | | 15263 | 2643 | 24062 | 41968 |
S/G/Y/R/B/O |
NT_006258 | AC095055 | 152373014 | 3 | chr4 | NT_006258 | AC104819 | 152556492 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_006258 | AC095055 | 152373014 | 3 |   |   | AC026556 | 152159395 | | 23349 | 0 | 578 | 23927 |
S/G/Y/R/B/O |
NT_006258 | AC104819 | 152556492 | 3 | chr4 | NT_006258 | AC079795 | 152683695 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC104819 | 152556492 | 3 |   |   | AC026556 | 152556492 | | 40873 | 10993 | 12622 | 64488 |
S/G/Y/R/B/O |
NT_006258 | AC104819 | 152556492 | 3 |   |   | AC084420 | 152683695 | | 97566 | 0 | 867 | 98433 |
S/G/Y/R/B/O |
NT_006258 | AC079795 | 152683695 | 3 | chr4 | NT_006258 | AC097455 | 152791880 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC079795 | 152683695 | 3 |   |   | AC084420 | 152373014 | | 30675 | 0 | 12267 | 42942 |
S/G/Y/R/B/O |
NT_006258 | AC097455 | 152791880 | 3 | chr4 | NT_006258 | AC092611 | 152937207 | 3 | 0 | 1223 | 0 | 1223 |
S/G/Y/R/B/O |
NT_006258 | AC092611 | 152937207 | 3 | chr4 | NT_006258 | AC126279 | 153077178 | 1 | 105902 | 0 | 0 | 105902 |
S/G/Y/R/B/O |
NT_006258 | AC092611 | 152937207 | 3 |   |   | AC044853 | 152937207 | | 22556 | 31837 | 14965 | 69358 |
S/G/Y/R/B/O |
NT_006258 | AC126279 | 153077178 | 1 | chr4 | NT_006258 | AC107074 | 153097366 | 3 | 36879 | 0 | 0 | 36879 |
S/G/Y/R/B/O |
NT_006258 | AC126279 | 153077178 | 1 | chr4 | NT_006258 | AC112242 | 153134299 | 3 | 48478 | 0 | 0 | 48478 |
S/G/Y/R/B/O |
NT_006258 | AC126279 | 153077178 | 1 |   |   | AC023581 | 153077178 | | 21212 | 0 | 0 | 21212 |
S/G/Y/R/B/O |
NT_006258 | AC126279 | 153077178 | 1 |   |   | AC044853 | 153077178 | | 54066 | 50865 | 22792 | 127723 |
S/G/Y/R/B/O |
NT_006258 | AC107074 | 153097366 | 3 | chr4 | NT_006258 | AC112242 | 153134299 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC112242 | 153134299 | 3 | chr4 | NT_006258 | AC097375 | 153218818 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC112242 | 153134299 | 3 | chr4 | NT_006258 | AC126279 | 153077178 | 1 | 48478 | 0 | 0 | 48478 |
S/G/Y/R/B/O |
NT_006258 | AC112242 | 153134299 | 3 |   |   | AC023581 | 153077178 | | 45971 | 0 | 0 | 45971 |
S/G/Y/R/B/O |
NT_006258 | AC112242 | 153134299 | 3 |   |   | AC044853 | 153077178 | | 16615 | 11624 | 2394 | 30633 |
S/G/Y/R/B/O |
NT_006258 | AC097375 | 153218818 | 3 | chr4 | NT_006258 | AC079340 | 153400564 | 3 | 0 | 0 | 1741 | 1741 |
S/G/Y/R/B/O |
NT_006258 | AC097375 | 153218818 | 3 |   |   | AC023581 | 153077178 | | 75708 | 0 | 0 | 75708 |
S/G/Y/R/B/O |
NT_006258 | AC079340 | 153400564 | 3 | chr4 | NT_006258 | AC080078 | 153585400 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC080078 | 153585400 | 3 | chr4 | NT_006258 | AC023424 | 153733967 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC080078 | 153585400 | 3 |   |   | AC067826 | 153733967 | | 88371 | 0 | 0 | 88371 |
S/G/Y/R/B/O |
NT_006258 | AC023424 | 153733967 | 3 | chr4 | NT_006258 | AC106882 | 153932114 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_006258 | AC023424 | 153733967 | 3 |   |   | AC067826 | 153400564 | | 93636 | 0 | 0 | 93636 |
S/G/Y/R/B/O |
NT_006258 | AC106882 | 153932114 | 3 | chr4 | NT_006258 | AC113155 | 154106806 | 3 | 0 | 0 | 1689 | 1689 |
S/G/Y/R/B/O |
NT_006258 | AC113155 | 154106806 | 3 | chr4 | NT_006258 | AC099339 | 154125772 | 3 | 0 | 0 | 1685 | 1685 |
S/G/Y/R/B/O |
NT_006258 | AC099339 | 154125772 | 3 | chr4 | NT_006258 | AC093599 | 154246955 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC093599 | 154246955 | 3 | chr4 | NT_006258 | AC124013 | 154432892 | 3 | 0 | 1989 | 0 | 1989 |
S/G/Y/R/B/O |
NT_006258 | AC093599 | 154246955 | 3 |   |   | AC067780 | 154106806 | | 142187 | 6626 | 34053 | 182866 |
S/G/Y/R/B/O |
NT_006258 | AC124013 | 154432892 | 3 | chr4 | NT_006258 | AC114791 | 154457258 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC124013 | 154432892 | 3 |   |   | AC067780 | 154432892 | | 13045 | 2373 | 915 | 16333 |
S/G/Y/R/B/O |
NT_006258 | AC124013 | 154432892 | 3 |   |   | AC067780 | 154432892 | | 13045 | 2373 | 915 | 16333 |
S/G/Y/R/B/O |
NT_006258 | AC114791 | 154457258 | 3 | chr4 | NT_006258 | AC013477 | 154570526 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC013477 | 154570526 | 3 | chr4 | NT_006258 | AC116648 | 154750618 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC013477 | 154570526 | 3 |   |   | AC011842 | 154432892 | | 20889 | 6595 | 0 | 27484 |
S/G/Y/R/B/O |
NT_006258 | AC116648 | 154750618 | 3 | chr4 | NT_006258 | AC106865 | 154879063 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC116648 | 154750618 | 3 |   |   | AC011842 | 154750618 | | 86159 | 7955 | 12015 | 106129 |
S/G/Y/R/B/O |
NT_006258 | AC106865 | 154879063 | 3 | chr4 | NT_006258 | AC020703 | 155029181 | 3 | 0 | 1597 | 0 | 1597 |
S/G/Y/R/B/O |
NT_006258 | AC106865 | 154879063 | 3 |   |   | AC013303 | 154879063 | | 152266 | 0 | 0 | 152266 |
S/G/Y/R/B/O |
NT_006258 | AC106865 | 154879063 | 3 |   |   | AC104773 | 155029181 | | 95569 | 0 | 0 | 95569 |
S/G/Y/R/B/O |
NT_006258 | AC020703 | 155029181 | 3 | chr4 | NT_006258 | AC108160 | 155228673 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC108160 | 155228673 | 3 | chr4 | NT_006258 | AC104657 | 155266666 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006258 | AC104657 | 155266666 | 3 | chr4 | NT_006258 | AC079298 | 155391191 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC079298 | 155391191 | 3 | chr4 | NT_006258 | AC110608 | 155590013 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006258 | AC110608 | 155590013 | 3 | chr4 | NT_006258 | AC110775 | 155596473 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006258 | AC110775 | 155596473 | 3 | chr4 | NT_006258 | AC110753 | 155804773 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC110753 | 155804773 | 3 | chr4 | NT_006258 | AC107385 | 155835989 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_006258 | AC107385 | 155835989 | 3 | chr4 | NT_006258 | AC092616 | 155990431 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC092616 | 155990431 | 3 | chr4 | NT_006258 | AC009567 | 156034897 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC009567 | 156034897 | 3 | chr4 | NT_006258 | AC114739 | 156197720 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006258 | AC114739 | 156197720 | 3 |   |   |   |   |   |   |   |   |   |
| |
|
|
|