Chromosome 4 - Clone Overlaps

Chromosome 4 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_006111	NT_037622	NT_022865	NT_037623	NT_006081	NT_029956	NT_037624	NT_006051
NT_006307	NT_037625	NT_037626	NT_006342	NT_029958	NT_016407	NT_034693	NT_006344
NT_006316	NT_006189	NT_022794	NT_022751	NT_016297	NT_037627	NT_022782	NT_006238
NT_022853	NT_022778	NT_006216	NT_022760	NT_037628	NT_006109	NT_006204	NT_006397
NT_006383	NT_034703	NT_006365	NT_016354	NT_037629	NT_022846	NT_022819	NT_034706
NT_037630	NT_006127	NT_016606	NT_006258	NT_006171	NT_022776	NT_006198	NT_006257
NT_006118	NT_022792	NT_022800	NT_037631

NT_034703

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_034703	AC107381	107313746	3	chr4	NT_034703	AC114734	107436790	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034703	AC107381	107313746	3			AP001957	107436790		24326	0	0	24326
S/G/Y/R/B/O	NT_034703	AC114734	107436790	3	chr4	NT_034703	AC125469	107513483	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034703	AC125469	107513483	3	chr4	NT_034703	AC093680	107526189	3	0	0	0	0
S/G/Y/R/B/O	NT_034703	AC125469	107513483	3			AC020749	107513483		14704	0	0	14704
S/G/Y/R/B/O	NT_034703	AC125469	107513483	3			AC087108	107513483		14700	0	0	14700
S/G/Y/R/B/O	NT_034703	AC093680	107526189	3	chr4	NT_034703	AC092458	107674588	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034703	AC093680	107526189	3			AC004046	107436790		18862	0	0	18862
S/G/Y/R/B/O	NT_034703	AC093680	107526189	3			AC073229	107436790		32591	0	24160	56751
S/G/Y/R/B/O	NT_034703	AC092458	107674588	3	chr4	NT_034703	AC105400	107799207	3	0	1994	0	1994
S/G/Y/R/B/O	NT_034703	AC092458	107674588	3			AC004046	107674588		49597	0	0	49597
S/G/Y/R/B/O	NT_034703	AC092458	107674588	3			AC069206	107674588		27266	1437	12667	41370
S/G/Y/R/B/O	NT_034703	AC092458	107674588	3			AC073229	107674588		32941	1811	0	34752
S/G/Y/R/B/O	NT_034703	AC092458	107674588	3			AC117948	107799207		42340	0	0	42340
S/G/Y/R/B/O	NT_034703	AC105400	107799207	3	chr4	NT_034703	AC092445	107887669	3	0	0	0	0
S/G/Y/R/B/O	NT_034703	AC105400	107799207	3			AC009552	107799207		16395	2023	12148	30566
S/G/Y/R/B/O	NT_034703	AC105400	107799207	3			AC016029	107799207		31218	0	6281	37499
S/G/Y/R/B/O	NT_034703	AC105400	107799207	3			AC069206	107799207		23603	2613	31961	58177
S/G/Y/R/B/O	NT_034703	AC092445	107887669	3	chr4	NT_034703	AC104829	108059494	3	0	1998	0	1998
S/G/Y/R/B/O	NT_034703	AC092445	107887669	3			AC009552	107674588		22607	24170	45654	92431
S/G/Y/R/B/O	NT_034703	AC092445	107887669	3			AC016029	107674588		53970	0	10648	64618
S/G/Y/R/B/O	NT_034703	AC092445	107887669	3			AP002740	108059494		65365	0	0	65365
S/G/Y/R/B/O	NT_034703	AC104829	108059494	3	chr4	NT_034703	AC004058	108123486	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034703	AC104829	108059494	3			AC068842	108123486		31262	6291	7903	45456
S/G/Y/R/B/O	NT_034703	AC004058	108123486	3	chr4	NT_034703	AC003099	108159886	3	0	0	104	104
S/G/Y/R/B/O	NT_034703	AC004058	108123486	3			AC068842	108159886		21352	1393	0	22745
S/G/Y/R/B/O	NT_034703	AC004058	108123486	3			AP001821	108059494		20083	0	0	20083
S/G/Y/R/B/O	NT_034703	AC003099	108159886	3	chr4	NT_034703	AC106863	108254911	3	0	1994	0	1994
S/G/Y/R/B/O	NT_034703	AC003099	108159886	3			AC068842	108123486		33950	0	0	33950
S/G/Y/R/B/O	NT_034703	AC003099	108159886	3			AC079110	108123486		19407	0	0	19407
S/G/Y/R/B/O	NT_034703	AC003099	108159886	3			AP001821	108254911		88353	0	0	88353
S/G/Y/R/B/O	NT_034703	AC003099	108159886	3			AP001863	108254911		41800	0	0	41800
S/G/Y/R/B/O	NT_034703	AC106863	108254911	3	chr4	NT_034703	AP001819	108256911	3	0	0	0	0
S/G/Y/R/B/O	NT_034703	AP001819	108256911	3	chr4	NT_034703	AC104663	108416692	3	0	1997	0	1997
S/G/Y/R/B/O	NT_034703	AP001819	108256911	3			AC004048	108159886		100276	0	0	100276
S/G/Y/R/B/O	NT_034703	AP001819	108256911	3			AC079110	108159886		23269	0	47801	71070
S/G/Y/R/B/O	NT_034703	AC104663	108416692	3	chr4	NT_034703	AC003100	108552317	3	0	0	1623	1623
S/G/Y/R/B/O	NT_034703	AC104663	108416692	3			AC026921	108552317		38235	3506	7244	48985
S/G/Y/R/B/O	NT_034703	AC104663	108416692	3			AP001958	108256911		44964	1270	28369	74603
S/G/Y/R/B/O	NT_034703	AC003100	108552317	3	chr4	NT_034703	AC004055	108640728	3	0	0	0	0
S/G/Y/R/B/O	NT_034703	AC003100	108552317	3			AP001958	108416692		86664	0	0	86664
S/G/Y/R/B/O	NT_034703	AC004055	108640728	3	chr4	NT_034703	AC098586	108750563	3	0	0	1745	1745
S/G/Y/R/B/O	NT_034703	AC004055	108640728	3			AC026921	108416692		41326	0	0	41326
S/G/Y/R/B/O	NT_034703	AC004055	108640728	3			AP001958	108750563		30486	0	0	30486
S/G/Y/R/B/O	NT_034703	AC098586	108750563	3	chr4	NT_034703	AC106861	108898735	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034703	AC098586	108750563	3			AC060815	108640728		99264	1791	12825	113880
S/G/Y/R/B/O	NT_034703	AC098586	108750563	3			AC084810	108640728		49530	24052	10382	83964
S/G/Y/R/B/O	NT_034703	AC098586	108750563	3			AC084840	108640728		59646	0	2659	62305
S/G/Y/R/B/O	NT_034703	AC106861	108898735	3	chr4	NT_034703	AC004045	108901521	3	0	1930	0	1930
S/G/Y/R/B/O	NT_034703	AC004045	108901521	3	chr4	NT_034703	AC108170	109005872	3	0	0	0	0
S/G/Y/R/B/O	NT_034703	AC004045	108901521	3			AC084810	108750563		26418	1669	10638	38725
S/G/Y/R/B/O	NT_034703	AC108170	109005872	3	chr4	NT_034703	AC096564	109030792	3	0	0	1633	1633
S/G/Y/R/B/O	NT_034703	AC096564	109030792	3	chr4	NT_034703	AC114733	109192109	3	0	1995	0	1995
S/G/Y/R/B/O	NT_034703	AC096564	109030792	3			AC000016	109030792		16713	0	18843	35556
S/G/Y/R/B/O	NT_034703	AC114733	109192109	3	chr4	NT_034703	AC118062	109241192	3	0	1993	0	1993
S/G/Y/R/B/O	NT_034703	AC114733	109192109	3			AC000016	109192109		41668	0	3891	45559
S/G/Y/R/B/O	NT_034703	AC114733	109192109	3			AC021524	109192109		11944	660	0	12604
S/G/Y/R/B/O	NT_034703	AC118062	109241192	3	chr4	NT_034703	AC123576	109346801	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034703	AC118062	109241192	3			AC000016	109241192		79024	0	0	79024
S/G/Y/R/B/O	NT_034703	AC118062	109241192	3			AC004059	109241192		65093	0	0	65093
S/G/Y/R/B/O	NT_034703	AC118062	109241192	3			AC021524	109241192		81715	10143	1281	93139
S/G/Y/R/B/O	NT_034703	AC118062	109241192	3			AP002077	109346801		105056	0	0	105056
S/G/Y/R/B/O	NT_034703	AC123576	109346801	3	chr4	NT_034703	AC092539	109362507	3	0	1971	0	1971
S/G/Y/R/B/O	NT_034703	AC123576	109346801	3			AC021524	109346801		17520	0	0	17520
S/G/Y/R/B/O	NT_034703	AC092539	109362507	3	chr4	NT_034703	AC097067	109385531	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034703	AC092539	109362507	3			AC021524	109241192		17220	7299	0	24519
S/G/Y/R/B/O	NT_034703	AC092539	109362507	3			AP002077	109346801		26202	0	0	26202
S/G/Y/R/B/O	NT_034703	AC097067	109385531	3	chr4	NT_034703	AC005510	109522031	3	0	1996	0	1996
S/G/Y/R/B/O	NT_034703	AC097067	109385531	3			AC026319	109522031		62795	0	48673	111468
S/G/Y/R/B/O	NT_034703	AC097067	109385531	3			AC026988	109522031		122459	4572	2591	129622
S/G/Y/R/B/O	NT_034703	AC097067	109385531	3			AP002077	109362507		28393	0	0	28393
S/G/Y/R/B/O	NT_034703	AC005510	109522031	3	chr4	NT_034703	AC093646	109688499	3	0	1998	0	1998
S/G/Y/R/B/O	NT_034703	AC005510	109522031	3			AC018945	109362507		32830	0	3456	36286
S/G/Y/R/B/O	NT_034703	AC005510	109522031	3			AC026319	109362507		19922	0	26753	46675
S/G/Y/R/B/O	NT_034703	AC005510	109522031	3			AC026988	109362507		49395	0	0	49395
S/G/Y/R/B/O	NT_034703	AC093646	109688499	3	chr4	NT_034703	AC084209	109720980	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034703	AC093646	109688499	3			AC018945	109522031		22649	2510	0	25159
S/G/Y/R/B/O	NT_034703	AC084209	109720980	3	chr4	NT_034703	AC107071	109870960	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034703	AC084209	109720980	3			AC018945	109720980		10141	6888	1245	18274
S/G/Y/R/B/O	NT_034703	AC107071	109870960	3	chr4	NT_034703	AC097473	109979754	3	0	1094	0	1094
S/G/Y/R/B/O	NT_034703	AC107071	109870960	3			AP002079	109979754		53634	0	0	53634
S/G/Y/R/B/O	NT_034703	AC097473	109979754	3	chr4	NT_034703	AC073427	110129232	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034703	AC073427	110129232	3	chr4	NT_034703	AC095066	110284380	3	2000	0	0	2000
S/G/Y/R/B/O	NT_034703	AC073427	110129232	3			AC009571	109870960		89702	4503	17793	111998
S/G/Y/R/B/O	NT_034703	AC073427	110129232	3			AP002081	109979754		20681	0	0	20681
S/G/Y/R/B/O	NT_034703	AC095066	110284380	3	chr4	NT_034703	AC004701	110380114	3	0	1997	0	1997
S/G/Y/R/B/O	NT_034703	AC095066	110284380	3			AC009571	110380114		44314	0	0	44314
S/G/Y/R/B/O	NT_034703	AC095066	110284380	3			AC079099	110129232		58316	8040	9084	75440
S/G/Y/R/B/O	NT_034703	AC095066	110284380	3			AP002081	110129232		72761	1926	1235	75922
S/G/Y/R/B/O	NT_034703	AC004701	110380114	3	chr4	NT_034703	AC004051	110521953	3	15569	0	0	15569
S/G/Y/R/B/O	NT_034703	AC004701	110380114	3			AC079099	110521953		43330	2362	0	45692
S/G/Y/R/B/O	NT_034703	AC004701	110380114	3			AP002021	110284380		61647	0	6630	68277
S/G/Y/R/B/O	NT_034703	AC004701	110380114	3			AP002081	110284380		22837	0	0	22837
S/G/Y/R/B/O	NT_034703	AC004051	110521953	3
S/G/Y/R/B/O	NT_034703	AC004051	110521953	3			AP002021	110380114		20277	1647	0	21924