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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_022853 | AC027271 | 52640536 | 3 | chr4 | NT_022853 | AC104784 | 52818521 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022853 | AC027271 | 52640536 | 3 |   |   | AC068526 | 14330907 | | 18009 | 1753 | 1409 | 21171 |
S/G/Y/R/B/O |
NT_022853 | AC104784 | 52818521 | 3 | chr4 | NT_022853 | AC093858 | 52858583 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_022853 | AC104784 | 52818521 | 3 |   |   | AC068526 | 14330907 | | 12098 | 0 | 2172 | 14270 |
S/G/Y/R/B/O |
NT_022853 | AC093858 | 52858583 | 3 | chr4 | NT_022853 | AC107402 | 53007696 | 3 | 0 | 1991 | 0 | 1991 |
S/G/Y/R/B/O |
NT_022853 | AC093858 | 52858583 | 3 |   |   | AC068526 | 52858583 | | 32538 | 19071 | 3534 | 55143 |
S/G/Y/R/B/O |
NT_022853 | AC107402 | 53007696 | 3 | chr4 | NT_022853 | AC093880 | 53010604 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_022853 | AC093880 | 53010604 | 3 | chr4 | NT_022853 | AC026669 | 53178570 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022853 | AC026669 | 53178570 | 3 | chr4 | NT_022853 | AC097522 | 53201430 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC097522 | 53201430 | 3 | chr4 | NT_022853 | AC026448 | 53407313 | 3 | 0 | 0 | 973 | 973 |
S/G/Y/R/B/O |
NT_022853 | AC097522 | 53201430 | 3 |   |   | AC012538 | 53201430 | | 13965 | 0 | 0 | 13965 |
S/G/Y/R/B/O |
NT_022853 | AC026448 | 53407313 | 3 | chr4 | NT_022853 | AC104066 | 53510777 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022853 | AC026448 | 53407313 | 3 |   |   | AC012538 | 53178570 | | 81007 | 0 | 4709 | 85716 |
S/G/Y/R/B/O |
NT_022853 | AC104066 | 53510777 | 3 | chr4 | NT_022853 | AC112252 | 53637251 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_022853 | AC112252 | 53637251 | 3 | chr4 | NT_022853 | AC023154 | 53639401 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC023154 | 53639401 | 3 | chr4 | NT_022853 | AC023107 | 53824405 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC023107 | 53824405 | 3 | chr4 | NT_022853 | AC108153 | 53923822 | 3 | 0 | 0 | 1707 | 1707 |
S/G/Y/R/B/O |
NT_022853 | AC108153 | 53923822 | 3 | chr4 | NT_022853 | AC079995 | 53967514 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC079995 | 53967514 | 3 | chr4 | NT_022853 | AC098821 | 54155228 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC098821 | 54155228 | 3 | chr4 | NT_022853 | AC058822 | 54234073 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC058822 | 54234073 | 3 | chr4 | NT_022853 | AC095040 | 54402285 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC058822 | 54234073 | 3 |   |   | AC048370 | 53967514 | | 23076 | 0 | 12099 | 35175 |
S/G/Y/R/B/O |
NT_022853 | AC095040 | 54402285 | 3 | chr4 | NT_022853 | AC124017 | 54490456 | 1 | 39207 | 0 | 0 | 39207 |
S/G/Y/R/B/O |
NT_022853 | AC095040 | 54402285 | 3 |   |   | AC021985 | 54155228 | | 18164 | 0 | 0 | 18164 |
S/G/Y/R/B/O |
NT_022853 | AC095040 | 54402285 | 3 |   |   | AC048370 | 54155228 | | 76842 | 2615 | 5797 | 85254 |
S/G/Y/R/B/O |
NT_022853 | AC124017 | 54490456 | 1 | chr4 | NT_022853 | AC105384 | 54613620 | 3 | 34031 | 0 | 0 | 34031 |
S/G/Y/R/B/O |
NT_022853 | AC124017 | 54490456 | 1 |   |   | AC021985 | 54490456 | | 18253 | 1583 | 0 | 19836 |
S/G/Y/R/B/O |
NT_022853 | AC124017 | 54490456 | 1 |   |   | AC048370 | 54490456 | | 70415 | 8412 | 7088 | 85915 |
S/G/Y/R/B/O |
NT_022853 | AC105384 | 54613620 | 3 | chr4 | NT_022853 | AC110792 | 54768944 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022853 | AC105384 | 54613620 | 3 |   |   | AC069068 | 54613620 | | 21078 | 2122 | 2385 | 25585 |
S/G/Y/R/B/O |
NT_022853 | AC110792 | 54768944 | 3 | chr4 | NT_022853 | AC110298 | 54937146 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC110792 | 54768944 | 3 |   |   | AC069068 | 54959138 | | 57945 | 5733 | 40409 | 104087 |
S/G/Y/R/B/O |
NT_022853 | AC110298 | 54937146 | 3 | chr4 | NT_022853 | AC026580 | 54959138 | 1 | 17436 | 6384 | 0 | 23820 |
S/G/Y/R/B/O |
NT_022853 | AC110298 | 54937146 | 3 |   |   | AC009614 | 54937146 | | 23250 | 719 | 0 | 23969 |
S/G/Y/R/B/O |
NT_022853 | AC026580 | 54959138 | 1 | chr4 | NT_022853 | AC098587 | 55088924 | 3 | 3011 | 0 | 0 | 3011 |
S/G/Y/R/B/O |
NT_022853 | AC026580 | 54959138 | 1 |   |   | AC009614 | 54768944 | | 14476 | 7216 | 54033 | 75725 |
S/G/Y/R/B/O |
NT_022853 | AC098587 | 55088924 | 3 | chr4 | NT_022853 | AC098868 | 55221088 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC098587 | 55088924 | 3 |   |   | AC016089 | 54768944 | | 43930 | 1542 | 0 | 45472 |
S/G/Y/R/B/O |
NT_022853 | AC098868 | 55221088 | 3 | chr4 | NT_022853 | AC006552 | 55344060 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC098868 | 55221088 | 3 |   |   | AC016089 | 55344060 | | 81697 | 0 | 310 | 82007 |
S/G/Y/R/B/O |
NT_022853 | AC006552 | 55344060 | 3 | chr4 | NT_022853 | AC092545 | 55527453 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_022853 | AC006552 | 55344060 | 3 |   |   | AC006553 | 55088924 | | 70649 | 0 | 0 | 70649 |
S/G/Y/R/B/O |
NT_022853 | AC006552 | 55344060 | 3 |   |   | AC079069 | 55088924 | | 141642 | 4423 | 6430 | 152495 |
S/G/Y/R/B/O |
NT_022853 | AC092545 | 55527453 | 3 | chr4 | NT_022853 | AC097494 | 55622091 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC092545 | 55527453 | 3 |   |   | AC006553 | 55344060 | | 35777 | 0 | 4608 | 40385 |
S/G/Y/R/B/O |
NT_022853 | AC092545 | 55527453 | 3 |   |   | AC084839 | 55344060 | | 57022 | 2458 | 1403 | 60883 |
S/G/Y/R/B/O |
NT_022853 | AC097494 | 55622091 | 3 | chr4 | NT_022853 | AC125242 | 55764226 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_022853 | AC097494 | 55622091 | 3 |   |   | AC084839 | 55622091 | | 55613 | 0 | 0 | 55613 |
S/G/Y/R/B/O |
NT_022853 | AC125242 | 55764226 | 3 | chr4 | NT_022853 | AC111194 | 55777032 | 3 | 0 | 0 | 1860 | 1860 |
S/G/Y/R/B/O |
NT_022853 | AC111194 | 55777032 | 3 | chr4 | NT_022853 | AC021220 | 55911483 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC021220 | 55911483 | 3 | chr4 | NT_022853 | AC108209 | 56083277 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC108209 | 56083277 | 3 | chr4 | NT_022853 | AC064824 | 56125012 | 3 | 0 | 1908 | 0 | 1908 |
S/G/Y/R/B/O |
NT_022853 | AC064824 | 56125012 | 3 | chr4 | NT_022853 | AC069200 | 56197066 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_022853 | AC069200 | 56197066 | 3 | chr4 | NT_022853 | AC110372 | 56343990 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022853 | AC110372 | 56343990 | 3 | chr4 | NT_022853 | AC024243 | 56345984 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022853 | AC024243 | 56345984 | 3 | chr4 | NT_022853 | AC113152 | 56507845 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022853 | AC113152 | 56507845 | 3 | chr4 | NT_022853 | AC110611 | 56615504 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC113152 | 56507845 | 3 |   |   | AC084842 | 56125012 | | 48786 | 4314 | 5110 | 58210 |
S/G/Y/R/B/O |
NT_022853 | AC113152 | 56507845 | 3 |   |   | AC112714 | 56615504 | | 11945 | 19578 | 21541 | 53064 |
S/G/Y/R/B/O |
NT_022853 | AC110611 | 56615504 | 3 | chr4 | NT_022853 | AC118280 | 56808659 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC110611 | 56615504 | 3 |   |   | AC079006 | 56615504 | | 72546 | 1505 | 2569 | 76620 |
S/G/Y/R/B/O |
NT_022853 | AC110611 | 56615504 | 3 |   |   | AC084842 | 56615504 | | 12512 | 0 | 0 | 12512 |
S/G/Y/R/B/O |
NT_022853 | AC110611 | 56615504 | 3 |   |   | AC112714 | 56615504 | | 35076 | 10777 | 15289 | 61142 |
S/G/Y/R/B/O |
NT_022853 | AC118280 | 56808659 | 3 | chr4 | NT_022853 | AC092627 | 56827873 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC118280 | 56808659 | 3 |   |   | AC079006 | 56808659 | | 19871 | 407 | 0 | 20278 |
S/G/Y/R/B/O |
NT_022853 | AC092627 | 56827873 | 3 | chr4 | NT_022853 | AC022267 | 56928772 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC092627 | 56827873 | 3 |   |   | AC079006 | 56928772 | | 33224 | 2694 | 7487 | 43405 |
S/G/Y/R/B/O |
NT_022853 | AC022267 | 56928772 | 3 | chr4 | NT_022853 | AC068620 | 57126244 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_022853 | AC068620 | 57126244 | 3 | chr4 | NT_022853 | AC114766 | 57271778 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC068620 | 57126244 | 3 |   |   | AC068478 | 56928772 | | 44524 | 432 | 1310 | 46266 |
S/G/Y/R/B/O |
NT_022853 | AC114766 | 57271778 | 3 | chr4 | NT_022853 | AC108215 | 57347658 | 3 | 0 | 0 | 1798 | 1798 |
S/G/Y/R/B/O |
NT_022853 | AC114766 | 57271778 | 3 |   |   | AC068478 | 57271778 | | 62378 | 4123 | 9428 | 75929 |
S/G/Y/R/B/O |
NT_022853 | AC108215 | 57347658 | 3 | chr4 | NT_022853 | AC022483 | 57512253 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC022483 | 57512253 | 3 | chr4 | NT_022853 | AC055850 | 57715993 | 1 | 28212 | 11540 | 9447 | 49199 |
S/G/Y/R/B/O |
NT_022853 | AC055850 | 57715993 | 1 | chr4 | NT_022853 | AC069307 | 57748618 | 3 | 31196 | 13492 | 4090 | 48778 |
S/G/Y/R/B/O |
NT_022853 | AC055850 | 57715993 | 1 |   |   | AC068261 | 57512253 | | 32795 | 10368 | 8217 | 51380 |
S/G/Y/R/B/O |
NT_022853 | AC069307 | 57748618 | 3 | chr4 | NT_022853 | AC111197 | 57952092 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC069307 | 57748618 | 3 |   |   | AC068261 | 57715993 | | 133714 | 20361 | 8954 | 163029 |
S/G/Y/R/B/O |
NT_022853 | AC111197 | 57952092 | 3 | chr4 | NT_022853 | AC105390 | 58008167 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_022853 | AC105390 | 58008167 | 3 | chr4 | NT_022853 | AC006222 | 58051725 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC006222 | 58051725 | 3 | chr4 | NT_022853 | AC073196 | 58215368 | 3 | 0 | 0 | 1597 | 1597 |
S/G/Y/R/B/O |
NT_022853 | AC073196 | 58215368 | 3 | chr4 | NT_022853 | AC013724 | 58282293 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_022853 | AC013724 | 58282293 | 3 | chr4 | NT_022853 | AC107396 | 58446814 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_022853 | AC107396 | 58446814 | 3 | chr4 | NT_022853 | AC093725 | 58489536 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022853 | AC093725 | 58489536 | 3 | chr4 | NT_022853 | AC104804 | 58651332 | 3 | 0 | 1989 | 0 | 1989 |
S/G/Y/R/B/O |
NT_022853 | AC093725 | 58489536 | 3 |   |   | AC036195 | 58282293 | | 38601 | 5179 | 1419 | 45199 |
S/G/Y/R/B/O |
NT_022853 | AC104804 | 58651332 | 3 | chr4 | NT_022853 | AC104790 | 58693276 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC104804 | 58651332 | 3 |   |   | AC036195 | 58651332 | | 33520 | 0 | 0 | 33520 |
S/G/Y/R/B/O |
NT_022853 | AC104790 | 58693276 | 3 | chr4 | NT_022853 | AC106867 | 58814865 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC104790 | 58693276 | 3 |   |   | AC022553 | 58693276 | | 115794 | 0 | 0 | 115794 |
S/G/Y/R/B/O |
NT_022853 | AC104790 | 58693276 | 3 |   |   | AC036195 | 58693276 | | 29435 | 1923 | 12855 | 44213 |
S/G/Y/R/B/O |
NT_022853 | AC106867 | 58814865 | 3 | chr4 | NT_022853 | AC096725 | 58922392 | 3 | 0 | 0 | 1587 | 1587 |
S/G/Y/R/B/O |
NT_022853 | AC106867 | 58814865 | 3 |   |   | AC021306 | 58814865 | | 73319 | 0 | 0 | 73319 |
S/G/Y/R/B/O |
NT_022853 | AC106867 | 58814865 | 3 |   |   | AC022553 | 58814865 | | 44748 | 0 | 0 | 44748 |
S/G/Y/R/B/O |
NT_022853 | AC106867 | 58814865 | 3 |   |   | AC027782 | 58814865 | | 65326 | 3611 | 9653 | 78590 |
S/G/Y/R/B/O |
NT_022853 | AC096725 | 58922392 | 3 | chr4 | NT_022853 | AC097710 | 59103019 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC096725 | 58922392 | 3 |   |   | AC011627 | 58693276 | | 73294 | 2572 | 17373 | 93239 |
S/G/Y/R/B/O |
NT_022853 | AC096725 | 58922392 | 3 |   |   | AC021306 | 58693276 | | 59486 | 1601 | 0 | 61087 |
S/G/Y/R/B/O |
NT_022853 | AC096725 | 58922392 | 3 |   |   | AC027782 | 58693276 | | 22113 | 1691 | 9361 | 33165 |
S/G/Y/R/B/O |
NT_022853 | AC097710 | 59103019 | 3 | chr4 | NT_022853 | AC019133 | 59257867 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022853 | AC097710 | 59103019 | 3 |   |   | AC011627 | 58814865 | | 16285 | 0 | 13253 | 29538 |
S/G/Y/R/B/O |
NT_022853 | AC097710 | 59103019 | 3 |   |   | AC069196 | 59257867 | | 12798 | 3891 | 9346 | 26035 |
S/G/Y/R/B/O |
NT_022853 | AC019133 | 59257867 | 3 | chr4 | NT_022853 | AC098675 | 59441423 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022853 | AC098675 | 59441423 | 3 | chr4 | NT_022853 | AC017091 | 59531338 | 3 | 0 | 0 | 1820 | 1820 |
S/G/Y/R/B/O |
NT_022853 | AC017091 | 59531338 | 3 |   |   |   |   |   |   |   |   |   |
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