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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_006118 | AC131094 | 176879583 | 3 | chr4 | NT_006118 | AC105925 | 176949726 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_006118 | AC105925 | 176949726 | 3 | chr4 | NT_006118 | AC093819 | 177085923 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006118 | AC105925 | 176949726 | 3 |   |   | AC110301 | 176949726 | | 96258 | 0 | 0 | 96258 |
S/G/Y/R/B/O |
NT_006118 | AC093819 | 177085923 | 3 | chr4 | NT_006118 | AC097537 | 177251978 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006118 | AC097537 | 177251978 | 3 | chr4 | NT_006118 | AC110794 | 177388552 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006118 | AC110794 | 177388552 | 3 | chr4 | NT_006118 | AC093605 | 177535393 | 3 | 0 | 1605 | 0 | 1605 |
S/G/Y/R/B/O |
NT_006118 | AC110794 | 177388552 | 3 |   |   | AC023537 | 177388552 | | 29031 | 14630 | 23262 | 66923 |
S/G/Y/R/B/O |
NT_006118 | AC093605 | 177535393 | 3 | chr4 | NT_006118 | AC019163 | 177720823 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006118 | AC093605 | 177535393 | 3 |   |   | AC022988 | 177720823 | | 100080 | 5873 | 40256 | 146209 |
S/G/Y/R/B/O |
NT_006118 | AC093605 | 177535393 | 3 |   |   | AC023537 | 177720823 | | 43849 | 1862 | 12263 | 57974 |
S/G/Y/R/B/O |
NT_006118 | AC093605 | 177535393 | 3 |   |   | AC092950 | 177720823 | | 182797 | 0 | 3663 | 186460 |
S/G/Y/R/B/O |
NT_006118 | AC019163 | 177720823 | 3 | chr4 | NT_006118 | AC096567 | 177936744 | 3 | 0 | 0 | 1668 | 1668 |
S/G/Y/R/B/O |
NT_006118 | AC019163 | 177720823 | 3 |   |   | AC020690 | 177388552 | | 42373 | 0 | 45064 | 87437 |
S/G/Y/R/B/O |
NT_006118 | AC019163 | 177720823 | 3 |   |   | AC092950 | 177388552 | | 11468 | 0 | 0 | 11468 |
S/G/Y/R/B/O |
NT_006118 | AC096567 | 177936744 | 3 | chr4 | NT_006118 | AC093801 | 178061494 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006118 | AC096567 | 177936744 | 3 |   |   | AC020690 | 177720823 | | 63995 | 0 | 43007 | 107002 |
S/G/Y/R/B/O |
NT_006118 | AC093801 | 178061494 | 3 | chr4 | NT_006118 | AC092673 | 178186423 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_006118 | AC092673 | 178186423 | 3 | chr4 | NT_006118 | AC105401 | 178350763 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_006118 | AC092673 | 178186423 | 3 |   |   | AC087107 | 177936744 | | 13629 | 0 | 0 | 13629 |
S/G/Y/R/B/O |
NT_006118 | AC105401 | 178350763 | 3 | chr4 | NT_006118 | AC105756 | 178378827 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006118 | AC105401 | 178350763 | 3 |   |   | AC087107 | 178350763 | | 29894 | 0 | 0 | 29894 |
S/G/Y/R/B/O |
NT_006118 | AC105756 | 178378827 | 3 | chr4 | NT_006118 | AC097518 | 178533221 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006118 | AC105756 | 178378827 | 3 |   |   | AC012129 | 178378827 | | 62039 | 2538 | 1206 | 65783 |
S/G/Y/R/B/O |
NT_006118 | AC105756 | 178378827 | 3 |   |   | AC084687 | 178378827 | | 91642 | 15589 | 3728 | 110959 |
S/G/Y/R/B/O |
NT_006118 | AC105756 | 178378827 | 3 |   |   | AC087107 | 178378827 | | 63230 | 0 | 0 | 63230 |
S/G/Y/R/B/O |
NT_006118 | AC097518 | 178533221 | 3 | chr4 | NT_006118 | AC103541 | 178720544 | 3 | 23941 | 0 | 0 | 23941 |
S/G/Y/R/B/O |
NT_006118 | AC097518 | 178533221 | 3 |   |   | AC013774 | 178350763 | | 95769 | 2914 | 8195 | 106878 |
S/G/Y/R/B/O |
NT_006118 | AC097518 | 178533221 | 3 |   |   | AC024453 | 178350763 | | 45772 | 13796 | 17499 | 77067 |
S/G/Y/R/B/O |
NT_006118 | AC103541 | 178720544 | 3 | chr4 | NT_006118 | AC027627 | 178722538 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_006118 | AC103541 | 178720544 | 3 |   |   | AC013774 | 178378827 | | 11047 | 0 | 0 | 11047 |
S/G/Y/R/B/O |
NT_006118 | AC103541 | 178720544 | 3 |   |   | AC024453 | 178378827 | | 11982 | 8245 | 4457 | 24684 |
S/G/Y/R/B/O |
NT_006118 | AC027627 | 178722538 | 3 | chr4 | NT_006118 | AC078881 | 178912203 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006118 | AC027627 | 178722538 | 3 |   |   | AC024453 | 178533221 | | 29703 | 6748 | 3222 | 39673 |
S/G/Y/R/B/O |
NT_006118 | AC078881 | 178912203 | 3 | chr4 | NT_006118 | AC106880 | 179081271 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006118 | AC078881 | 178912203 | 3 |   |   | AC084698 | 178722538 | | 76698 | 0 | 1553 | 78251 |
S/G/Y/R/B/O |
NT_006118 | AC106880 | 179081271 | 3 | chr4 | NT_006118 | AC103879 | 179146632 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006118 | AC106880 | 179081271 | 3 |   |   | AC084698 | 178912203 | | 37463 | 0 | 20945 | 58408 |
S/G/Y/R/B/O |
NT_006118 | AC103879 | 179146632 | 3 | chr4 | NT_006118 | AC019170 | 179172558 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006118 | AC019170 | 179172558 | 3 | chr4 | NT_006118 | AC109519 | 179355839 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_006118 | AC109519 | 179355839 | 3 | chr4 | NT_006118 | AC021850 | 179361226 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_006118 | AC021850 | 179361226 | 3 | chr4 | NT_006118 | AC021200 | 179566191 | 3 | 0 | 1857 | 0 | 1857 |
S/G/Y/R/B/O |
NT_006118 | AC021850 | 179361226 | 3 |   |   | AC067788 | 179566191 | | 57460 | 3978 | 11011 | 72449 |
S/G/Y/R/B/O |
NT_006118 | AC021200 | 179566191 | 3 | chr4 | NT_006118 | AC107384 | 179719024 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_006118 | AC021200 | 179566191 | 3 |   |   | AC067788 | 179361226 | | 23362 | 1760 | 3820 | 28942 |
S/G/Y/R/B/O |
NT_006118 | AC107384 | 179719024 | 3 | chr4 | NT_006118 | AC095041 | 179721018 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006118 | AC095041 | 179721018 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_006118 | AC095041 | 179721018 | 3 |   |   | AC079294 | 179566191 | | 51988 | 11136 | 2348 | 65472 |
S/G/Y/R/B/O |
NT_006118 | AC095041 | 179721018 | 3 |   |   | AC080103 | 179566191 | | 23457 | 2648 | 0 | 26105 |
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