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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_006216 | AC019173 | 69490856 | 3 | chr4 | NT_006216 | AC093720 | 69671973 | 3 | 65903 | 0 | 0 | 65903 |
S/G/Y/R/B/O |
NT_006216 | AC019173 | 69490856 | 3 |   |   | AC108490 | 69671973 | | 53361 | 0 | 0 | 53361 |
S/G/Y/R/B/O |
NT_006216 | AC093720 | 69671973 | 3 | chr4 | NT_006216 | AC021146 | 69710977 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC021146 | 69710977 | 3 | chr4 | NT_006216 | AC107401 | 69926976 | 3 | 0 | 0 | 1809 | 1809 |
S/G/Y/R/B/O |
NT_006216 | AC107401 | 69926976 | 3 | chr4 | NT_006216 | AC111000 | 70029055 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC111000 | 70029055 | 3 | chr4 | NT_006216 | AC114797 | 70118660 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_006216 | AC114797 | 70118660 | 3 | chr4 | NT_006216 | AC114786 | 70159987 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC114786 | 70159987 | 3 | chr4 | NT_006216 | AC108078 | 70306964 | 3 | 20006 | 1995 | 0 | 22001 |
S/G/Y/R/B/O |
NT_006216 | AC108078 | 70306964 | 3 | chr4 | NT_006216 | AC093829 | 70408307 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC093829 | 70408307 | 3 | chr4 | NT_006216 | AC125239 | 70575790 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC093829 | 70408307 | 3 |   |   | AC012582 | 70159987 | | 18559 | 17614 | 26470 | 62643 |
S/G/Y/R/B/O |
NT_006216 | AC125239 | 70575790 | 3 | chr4 | NT_006216 | AC108941 | 70696818 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC108941 | 70696818 | 3 | chr4 | NT_006216 | AC063956 | 70874091 | 3 | 0 | 1992 | 0 | 1992 |
S/G/Y/R/B/O |
NT_006216 | AC108941 | 70696818 | 3 |   |   | AC024676 | 70696818 | | 70569 | 2012 | 0 | 72581 |
S/G/Y/R/B/O |
NT_006216 | AC108941 | 70696818 | 3 |   |   | AC074273 | 70874091 | | 102323 | 0 | 42394 | 144717 |
S/G/Y/R/B/O |
NT_006216 | AC063956 | 70874091 | 3 | chr4 | NT_006216 | AC104811 | 71013665 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC063956 | 70874091 | 3 |   |   | AC069037 | 70575790 | | 33331 | 10348 | 0 | 43679 |
S/G/Y/R/B/O |
NT_006216 | AC104811 | 71013665 | 3 | chr4 | NT_006216 | AC105347 | 71108152 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC104811 | 71013665 | 3 |   |   | AC060228 | 70696818 | | 57503 | 7325 | 0 | 64828 |
S/G/Y/R/B/O |
NT_006216 | AC104811 | 71013665 | 3 |   |   | AC069037 | 70696818 | | 67400 | 4070 | 5267 | 76737 |
S/G/Y/R/B/O |
NT_006216 | AC105347 | 71108152 | 3 | chr4 | NT_006216 | AC106884 | 71175722 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC105347 | 71108152 | 3 |   |   | AC022672 | 71108152 | | 41973 | 8954 | 0 | 50927 |
S/G/Y/R/B/O |
NT_006216 | AC105347 | 71108152 | 3 |   |   | AC060228 | 71108152 | | 40133 | 0 | 19074 | 59207 |
S/G/Y/R/B/O |
NT_006216 | AC105347 | 71108152 | 3 |   |   | AC069037 | 71108152 | | 15010 | 4509 | 4294 | 23813 |
S/G/Y/R/B/O |
NT_006216 | AC105347 | 71108152 | 3 |   |   | AC113616 | 71175722 | | 55588 | 0 | 0 | 55588 |
S/G/Y/R/B/O |
NT_006216 | AC106884 | 71175722 | 3 | chr4 | NT_006216 | AC108518 | 71377146 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_006216 | AC106884 | 71175722 | 3 |   |   | AC022672 | 71175722 | | 124050 | 4465 | 0 | 128515 |
S/G/Y/R/B/O |
NT_006216 | AC106884 | 71175722 | 3 |   |   | AC060228 | 71175722 | | 16186 | 2176 | 0 | 18362 |
S/G/Y/R/B/O |
NT_006216 | AC106884 | 71175722 | 3 |   |   | AC113616 | 71377146 | | 124539 | 0 | 0 | 124539 |
S/G/Y/R/B/O |
NT_006216 | AC108518 | 71377146 | 3 | chr4 | NT_006216 | AC125230 | 71495758 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC108518 | 71377146 | 3 |   |   | AC134874 | 8830707 | | 59139 | 0 | 0 | 59139 |
S/G/Y/R/B/O |
NT_006216 | AC125230 | 71495758 | 3 | chr4 | NT_006216 | AC134919 | 71517205 | 1 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC134919 | 71517205 | 1 | chr4 | NT_006216 | AC021216 | 71650146 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC134919 | 71517205 | 1 | chr16 | NT_035386 | AC002040 | 23142182 | 3 | 29540 | 7735 | 11256 | 48531 |
S/G/Y/R/B/O |
NT_006216 | AC134919 | 71517205 | 1 | chr16 | NT_035386 | AC099482 | 23270947 | 3 | 18281 | 9359 | 32050 | 59690 |
S/G/Y/R/B/O |
NT_006216 | AC134919 | 71517205 | 1 | chr16 | NT_035386 | AC127459 | 23070506 | 3 | 16457 | 7737 | 9774 | 33968 |
S/G/Y/R/B/O |
NT_006216 | AC134919 | 71517205 | 1 |   |   | AC134874 | 23070506 | | 88813 | 2878 | 0 | 91691 |
S/G/Y/R/B/O |
NT_006216 | AC021216 | 71650146 | 3 | chr4 | NT_006216 | AC009570 | 71735048 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_006216 | AC009570 | 71735048 | 3 | chr4 | NT_006216 | AC021989 | 71913644 | 3 | 13107 | 0 | 0 | 13107 |
S/G/Y/R/B/O |
NT_006216 | AC009570 | 71735048 | 3 |   |   | AL365200 | 71913644 | | 77897 | 2371 | 13310 | 93578 |
S/G/Y/R/B/O |
NT_006216 | AC021989 | 71913644 | 3 | chr4 | NT_006216 | AC108014 | 72054944 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC108014 | 72054944 | 3 | chr4 | NT_006216 | AC093851 | 72089754 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC108014 | 72054944 | 3 |   |   | AC125280 | 72089754 | | 36810 | 0 | 0 | 36810 |
S/G/Y/R/B/O |
NT_006216 | AC093851 | 72089754 | 3 | chr4 | NT_006216 | AC096713 | 72288722 | 3 | 0 | 1992 | 0 | 1992 |
S/G/Y/R/B/O |
NT_006216 | AC093851 | 72089754 | 3 |   |   | AC019005 | 72089754 | | 56035 | 1820 | 7198 | 65053 |
S/G/Y/R/B/O |
NT_006216 | AC093851 | 72089754 | 3 |   |   | AC023765 | 72089754 | | 23708 | 0 | 54375 | 78083 |
S/G/Y/R/B/O |
NT_006216 | AC096713 | 72288722 | 3 | chr4 | NT_006216 | AC110783 | 72426828 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC096713 | 72288722 | 3 |   |   | AC019005 | 72054944 | | 86697 | 0 | 9149 | 95846 |
S/G/Y/R/B/O |
NT_006216 | AC110783 | 72426828 | 3 | chr4 | NT_006216 | AC079230 | 72448309 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC079230 | 72448309 | 3 | chr4 | NT_006216 | AC112226 | 72609854 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC079230 | 72448309 | 3 |   |   | AC110006 | 72288722 | | 87266 | 0 | 0 | 87266 |
S/G/Y/R/B/O |
NT_006216 | AC112226 | 72609854 | 3 | chr4 | NT_006216 | AC019089 | 72625353 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC019089 | 72625353 | 3 | chr4 | NT_006216 | AC024722 | 72800514 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_006216 | AC019089 | 72625353 | 3 |   |   | AC073514 | 72800514 | | 19280 | 7134 | 10232 | 36646 |
S/G/Y/R/B/O |
NT_006216 | AC024722 | 72800514 | 3 | chr4 | NT_006216 | AC068721 | 72916444 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC024722 | 72800514 | 3 |   |   | AC073514 | 72625353 | | 67580 | 2494 | 4232 | 74306 |
S/G/Y/R/B/O |
NT_006216 | AC024722 | 72800514 | 3 |   |   | AP002823 | 72625353 | | 21074 | 0 | 0 | 21074 |
S/G/Y/R/B/O |
NT_006216 | AC068721 | 72916444 | 3 | chr4 | NT_006216 | AC106898 | 73091726 | 3 | 29580 | 0 | 0 | 29580 |
S/G/Y/R/B/O |
NT_006216 | AC106898 | 73091726 | 3 | chr4 | NT_006216 | AC106051 | 73233589 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_006216 | AC106051 | 73233589 | 3 | chr4 | NT_006216 | AC095056 | 73344273 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC095056 | 73344273 | 3 | chr4 | NT_006216 | AC093790 | 73519266 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC093790 | 73519266 | 3 | chr4 | NT_006216 | AC104814 | 73669625 | 3 | 75911 | 0 | 0 | 75911 |
S/G/Y/R/B/O |
NT_006216 | AC093790 | 73519266 | 3 |   |   | AC068203 | 73233589 | | 42008 | 0 | 6626 | 48634 |
S/G/Y/R/B/O |
NT_006216 | AC104814 | 73669625 | 3 | chr4 | NT_006216 | AC110082 | 73775379 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC104814 | 73669625 | 3 |   |   | AC022863 | 73669625 | | 37139 | 0 | 0 | 37139 |
S/G/Y/R/B/O |
NT_006216 | AC104814 | 73669625 | 3 |   |   | AC068203 | 73669625 | | 79734 | 2714 | 8448 | 90896 |
S/G/Y/R/B/O |
NT_006216 | AC110082 | 73775379 | 3 | chr4 | NT_006216 | AC096728 | 73845761 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_006216 | AC096728 | 73845761 | 3 | chr4 | NT_006216 | AC093839 | 73926457 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_006216 | AC093839 | 73926457 | 3 | chr4 | NT_006216 | AC095053 | 74086979 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC095053 | 74086979 | 3 | chr4 | NT_006216 | AC105757 | 74197102 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC105757 | 74197102 | 3 | chr4 | NT_006216 | AC053527 | 74210251 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_006216 | AC053527 | 74210251 | 3 | chr4 | NT_006216 | AC108157 | 74441501 | 3 | 0 | 1990 | 0 | 1990 |
S/G/Y/R/B/O |
NT_006216 | AC053527 | 74210251 | 3 |   |   | AP002857 | 74441501 | | 18259 | 0 | 0 | 18259 |
S/G/Y/R/B/O |
NT_006216 | AC053527 | 74210251 | 3 |   |   | AP002911 | 74441501 | | 17123 | 0 | 0 | 17123 |
S/G/Y/R/B/O |
NT_006216 | AC108157 | 74441501 | 3 | chr4 | NT_006216 | AC110752 | 74606502 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_006216 | AC108157 | 74441501 | 3 |   |   | AC008076 | 74441501 | | 81110 | 2991 | 43131 | 127232 |
S/G/Y/R/B/O |
NT_006216 | AC108157 | 74441501 | 3 |   |   | AP002825 | 74606502 | | 57655 | 0 | 0 | 57655 |
S/G/Y/R/B/O |
NT_006216 | AC108157 | 74441501 | 3 |   |   | AP002911 | 74606502 | | 76388 | 0 | 9937 | 86325 |
S/G/Y/R/B/O |
NT_006216 | AC110752 | 74606502 | 3 | chr4 | NT_006216 | AC074250 | 74613844 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_006216 | AC074250 | 74613844 | 3 | chr4 | NT_006216 | AC112518 | 74811176 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_006216 | AC074250 | 74613844 | 3 |   |   | AL136327 | 74811176 | | 20925 | 0 | 38636 | 59561 |
S/G/Y/R/B/O |
NT_006216 | AC112518 | 74811176 | 3 | chr4 | NT_006216 | AC108029 | 74887585 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006216 | AC108029 | 74887585 | 3 | chr4 | NT_006216 | AC092438 | 74955717 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_006216 | AC092438 | 74955717 | 3 | chr4 | NT_006216 | AC097709 | 75021400 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC092438 | 74955717 | 3 |   |   | AC010784 | 74955717 | | 46237 | 0 | 0 | 46237 |
S/G/Y/R/B/O |
NT_006216 | AC092438 | 74955717 | 3 |   |   | AC046188 | 74955717 | | 28998 | 4316 | 0 | 33314 |
S/G/Y/R/B/O |
NT_006216 | AC092438 | 74955717 | 3 |   |   | AL133124 | 74887585 | | 48310 | 0 | 0 | 48310 |
S/G/Y/R/B/O |
NT_006216 | AC097709 | 75021400 | 3 | chr4 | NT_006216 | AC093677 | 75180141 | 3 | 0 | 451 | 0 | 451 |
S/G/Y/R/B/O |
NT_006216 | AC097709 | 75021400 | 3 |   |   | AC010784 | 74887585 | | 59389 | 0 | 23022 | 82411 |
S/G/Y/R/B/O |
NT_006216 | AC097709 | 75021400 | 3 |   |   | AC046188 | 74887585 | | 82242 | 0 | 0 | 82242 |
S/G/Y/R/B/O |
NT_006216 | AC097709 | 75021400 | 3 |   |   | AP001194 | 75180141 | | 19894 | 2345 | 0 | 22239 |
S/G/Y/R/B/O |
NT_006216 | AC093677 | 75180141 | 3 | chr4 | NT_006216 | AC097470 | 75327869 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC093677 | 75180141 | 3 |   |   | AC013573 | 75180141 | | 70274 | 0 | 7592 | 77866 |
S/G/Y/R/B/O |
NT_006216 | AC093677 | 75180141 | 3 |   |   | AP001194 | 75021400 | | 47250 | 2920 | 20345 | 70515 |
S/G/Y/R/B/O |
NT_006216 | AC097470 | 75327869 | 3 | chr4 | NT_006216 | AC021180 | 75436571 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006216 | AC097470 | 75327869 | 3 |   |   | AP001194 | 75180141 | | 20162 | 1254 | 3268 | 24684 |
S/G/Y/R/B/O |
NT_006216 | AC021180 | 75436571 | 3 | chr4 | NT_006216 | AC096858 | 75608511 | 3 | 0 | 1964 | 0 | 1964 |
S/G/Y/R/B/O |
NT_006216 | AC096858 | 75608511 | 3 | chr4 | NT_006216 | AC122131 | 75623827 | 3 | 0 | 1984 | 0 | 1984 |
S/G/Y/R/B/O |
NT_006216 | AC122131 | 75623827 | 3 |   |   |   |   |   |   |   |   |   |
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