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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_022760 | AC116645 | 75709847 | 3 | chr4 | NT_022760 | AC123887 | 75865608 | 3 | 0 | 0 | 2000 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC123887 | 75865608 | 3 | chr4 | NT_022760 | AC098825 | 75880880 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC098825 | 75880880 | 3 | chr4 | NT_022760 | AC110760 | 76054638 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC110760 | 76054638 | 3 | chr4 | NT_022760 | AC093870 | 76224270 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_022760 | AC093870 | 76224270 | 3 | chr4 | NT_022760 | AC027570 | 76415920 | 1 | 23944 | 5323 | 4597 | 33864 |
S/G/Y/R/B/O |
NT_022760 | AC027570 | 76415920 | 1 | chr4 | NT_022760 | AC025244 | 76430373 | 3 | 39747 | 1746 | 0 | 41493 |
S/G/Y/R/B/O |
NT_022760 | AC025244 | 76430373 | 3 | chr4 | NT_022760 | AC096759 | 76509899 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_022760 | AC096759 | 76509899 | 3 | chr4 | NT_022760 | AC108939 | 76704262 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022760 | AC108939 | 76704262 | 3 | chr4 | NT_022760 | AC104828 | 76706256 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022760 | AC104828 | 76706256 | 3 | chr4 | NT_022760 | AC110615 | 76885744 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_022760 | AC104828 | 76706256 | 3 |   |   | AC016124 | 76430373 | | 69718 | 8867 | 4555 | 83140 |
S/G/Y/R/B/O |
NT_022760 | AC104828 | 76706256 | 3 |   |   | AC053517 | 76430373 | | 62066 | 2989 | 22164 | 87219 |
S/G/Y/R/B/O |
NT_022760 | AC104828 | 76706256 | 3 |   |   | AC055774 | 76430373 | | 104784 | 21484 | 17508 | 143776 |
S/G/Y/R/B/O |
NT_022760 | AC104828 | 76706256 | 3 |   |   | AP002858 | 76885744 | | 16626 | 0 | 0 | 16626 |
S/G/Y/R/B/O |
NT_022760 | AC110615 | 76885744 | 3 | chr4 | NT_022760 | AC115628 | 77078845 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC110615 | 76885744 | 3 |   |   | AC053517 | 76885744 | | 30650 | 2425 | 18636 | 51711 |
S/G/Y/R/B/O |
NT_022760 | AC110615 | 76885744 | 3 |   |   | AP002858 | 77078845 | | 12080 | 0 | 97215 | 109295 |
S/G/Y/R/B/O |
NT_022760 | AC115628 | 77078845 | 3 | chr4 | NT_022760 | AC112719 | 77087574 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_022760 | AC112719 | 77087574 | 3 | chr4 | NT_022760 | AC110795 | 77250857 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC110795 | 77250857 | 3 | chr4 | NT_022760 | AC034139 | 77326153 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_022760 | AC110795 | 77250857 | 3 |   |   | AC015499 | 77078845 | | 42975 | 4866 | 19382 | 67223 |
S/G/Y/R/B/O |
NT_022760 | AC110795 | 77250857 | 3 |   |   | AC110802 | 77326153 | | 60917 | 0 | 0 | 60917 |
S/G/Y/R/B/O |
NT_022760 | AC110795 | 77250857 | 3 |   |   | AP002875 | 77087574 | | 37719 | 0 | 0 | 37719 |
S/G/Y/R/B/O |
NT_022760 | AC034139 | 77326153 | 3 | chr4 | NT_022760 | AC096743 | 77500563 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022760 | AC034139 | 77326153 | 3 |   |   | AC015499 | 77087574 | | 75945 | 0 | 0 | 75945 |
S/G/Y/R/B/O |
NT_022760 | AC096743 | 77500563 | 3 | chr4 | NT_022760 | AC112249 | 77602328 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC112249 | 77602328 | 3 | chr4 | NT_022760 | AC121158 | 77746879 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC112249 | 77602328 | 3 |   |   | AP002859 | 77746879 | | 93176 | 0 | 9942 | 103118 |
S/G/Y/R/B/O |
NT_022760 | AC121158 | 77746879 | 3 | chr4 | NT_022760 | AC107051 | 77755723 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_022760 | AC121158 | 77746879 | 3 |   |   | AP002859 | 77602328 | | 10832 | 0 | 0 | 10832 |
S/G/Y/R/B/O |
NT_022760 | AC107051 | 77755723 | 3 | chr4 | NT_022760 | AC107072 | 77810750 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_022760 | AC107051 | 77755723 | 3 |   |   | AC025141 | 77602328 | | 57051 | 0 | 0 | 57051 |
S/G/Y/R/B/O |
NT_022760 | AC107072 | 77810750 | 3 | chr4 | NT_022760 | AC104687 | 77961574 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_022760 | AC107072 | 77810750 | 3 |   |   | AC025141 | 77746879 | | 87373 | 0 | 0 | 87373 |
S/G/Y/R/B/O |
NT_022760 | AC107072 | 77810750 | 3 |   |   | AP002876 | 77755723 | | 52585 | 0 | 0 | 52585 |
S/G/Y/R/B/O |
NT_022760 | AC104687 | 77961574 | 3 | chr4 | NT_022760 | AC111196 | 78136236 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC104687 | 77961574 | 3 |   |   | AC079051 | 77755723 | | 115137 | 0 | 0 | 115137 |
S/G/Y/R/B/O |
NT_022760 | AC104687 | 77961574 | 3 |   |   | AP002874 | 78136236 | | 79713 | 0 | 1732 | 81445 |
S/G/Y/R/B/O |
NT_022760 | AC111196 | 78136236 | 3 | chr4 | NT_022760 | AC104771 | 78169427 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC111196 | 78136236 | 3 |   |   | AC079051 | 78136236 | | 35174 | 0 | 0 | 35174 |
S/G/Y/R/B/O |
NT_022760 | AC111196 | 78136236 | 3 |   |   | AP002874 | 78169427 | | 35162 | 0 | 0 | 35162 |
S/G/Y/R/B/O |
NT_022760 | AC104771 | 78169427 | 3 | chr4 | NT_022760 | AC112716 | 78314013 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC104771 | 78169427 | 3 |   |   | AC022548 | 78169427 | | 145577 | 0 | 0 | 145577 |
S/G/Y/R/B/O |
NT_022760 | AC112716 | 78314013 | 3 | chr4 | NT_022760 | AC008638 | 78389439 | 3 | 133823 | 0 | 0 | 133823 |
S/G/Y/R/B/O |
NT_022760 | AC008638 | 78389439 | 3 | chr4 | NT_022760 | AC108144 | 78470362 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC108144 | 78470362 | 3 | chr4 | NT_022760 | AC092674 | 78483263 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_022760 | AC092674 | 78483263 | 3 | chr4 | NT_022760 | AC093758 | 78668543 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022760 | AC092674 | 78483263 | 3 |   |   | AC015679 | 78483263 | | 39721 | 1874 | 2645 | 44240 |
S/G/Y/R/B/O |
NT_022760 | AC093758 | 78668543 | 3 | chr4 | NT_022760 | AC104701 | 78795171 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC093758 | 78668543 | 3 |   |   | AC015679 | 78470362 | | 21704 | 2478 | 698 | 24880 |
S/G/Y/R/B/O |
NT_022760 | AC093758 | 78668543 | 3 |   |   | AC026627 | 78470362 | | 29750 | 0 | 0 | 29750 |
S/G/Y/R/B/O |
NT_022760 | AC104701 | 78795171 | 3 | chr4 | NT_022760 | AC112225 | 78943718 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_022760 | AC104701 | 78795171 | 3 |   |   | AC026627 | 78795171 | | 134522 | 6227 | 0 | 140749 |
S/G/Y/R/B/O |
NT_022760 | AC104701 | 78795171 | 3 |   |   | AC124863 | 78943718 | | 10043 | 0 | 116441 | 126484 |
S/G/Y/R/B/O |
NT_022760 | AC112225 | 78943718 | 3 | chr4 | NT_022760 | AC114801 | 79054679 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022760 | AC112225 | 78943718 | 3 |   |   | AC026931 | 78943718 | | 12577 | 0 | 0 | 12577 |
S/G/Y/R/B/O |
NT_022760 | AC114801 | 79054679 | 3 | chr4 | NT_022760 | AC093652 | 79122424 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC114801 | 79054679 | 3 |   |   | AC026931 | 78795171 | | 39743 | 0 | 0 | 39743 |
S/G/Y/R/B/O |
NT_022760 | AC114801 | 79054679 | 3 |   |   | AC114782 | 79122424 | | 42042 | 0 | 0 | 42042 |
S/G/Y/R/B/O |
NT_022760 | AC093652 | 79122424 | 3 | chr4 | NT_022760 | AC093897 | 79181764 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_022760 | AC093652 | 79122424 | 3 |   |   | AC026931 | 79122424 | | 21713 | 4298 | 10962 | 36973 |
S/G/Y/R/B/O |
NT_022760 | AC093652 | 79122424 | 3 |   |   | AC114782 | 79181764 | | 30287 | 0 | 36737 | 67024 |
S/G/Y/R/B/O |
NT_022760 | AC093652 | 79122424 | 3 |   |   | AP002822 | 79054679 | | 55760 | 0 | 4938 | 60698 |
S/G/Y/R/B/O |
NT_022760 | AC093897 | 79181764 | 3 | chr4 | NT_022760 | AC131945 | 79343032 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022760 | AC093897 | 79181764 | 3 |   |   | AC114782 | 79122424 | | 71120 | 9787 | 8383 | 89290 |
S/G/Y/R/B/O |
NT_022760 | AC131945 | 79343032 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_022760 | AC131945 | 79343032 | 3 | chr4 | NT_037628 | AC093886 | 79486222 | 3 | 73201 | 0 | 0 | 73201 |
S/G/Y/R/B/O |
NT_022760 | AC131945 | 79343032 | 3 |   |   | AL160235 | 79181764 | | 29512 | 0 | 105100 | 134612 |
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