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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_022819 | AC116563 | 138763587 | 3 | chr4 | NT_022819 | AC131956 | 138860548 | 3 | 0 | 1933 | 0 | 1933 |
S/G/Y/R/B/O |
NT_022819 | AC131956 | 138860548 | 3 | chr4 | NT_022819 | AC097511 | 139053949 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022819 | AC131956 | 138860548 | 3 |   |   | AC036131 | 138860548 | | 66999 | 2730 | 6037 | 75766 |
S/G/Y/R/B/O |
NT_022819 | AC097511 | 139053949 | 3 | chr4 | NT_022819 | AC105310 | 139247201 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022819 | AC097511 | 139053949 | 3 |   |   | AC036131 | 138763587 | | 70539 | 1863 | 850 | 73252 |
S/G/Y/R/B/O |
NT_022819 | AC097511 | 139053949 | 3 |   |   | AC068463 | 138763587 | | 142408 | 2525 | 0 | 144933 |
S/G/Y/R/B/O |
NT_022819 | AC105310 | 139247201 | 3 | chr4 | NT_022819 | AC110804 | 139366667 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022819 | AC110804 | 139366667 | 3 | chr4 | NT_022819 | AC116610 | 139428863 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_022819 | AC116610 | 139428863 | 3 | chr4 | NT_022819 | AC093903 | 139430857 | 3 | 0 | 1988 | 0 | 1988 |
S/G/Y/R/B/O |
NT_022819 | AC093903 | 139430857 | 3 | chr4 | NT_022819 | AC105416 | 139590147 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_022819 | AC105416 | 139590147 | 3 | chr4 | NT_022819 | AC098859 | 139711478 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_022819 | AC105416 | 139590147 | 3 |   |   | AF178220 | 139430857 | | 37166 | 0 | 38781 | 75947 |
S/G/Y/R/B/O |
NT_022819 | AC098859 | 139711478 | 3 | chr4 | NT_022819 | AC109926 | 139893164 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022819 | AC109926 | 139893164 | 3 | chr4 | NT_022819 | AC093766 | 139895158 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_022819 | AC093766 | 139895158 | 3 | chr4 | NT_022819 | AC132478 | 140061725 | 1 | 140433 | 0 | 0 | 140433 |
S/G/Y/R/B/O |
NT_022819 | AC093766 | 139895158 | 3 | chr4 | NT_022819 | AC134617 | 140073727 | 1 | 33656 | 1778 | 482 | 35916 |
S/G/Y/R/B/O |
NT_022819 | AC132478 | 140061725 | 1 | chr4 | NT_022819 | AC134617 | 140073727 | 1 | 33656 | 4501 | 1205 | 39362 |
S/G/Y/R/B/O |
NT_022819 | AC134617 | 140073727 | 1 | chr4 | NT_022819 | AC109927 | 140110410 | 3 | 51517 | 4146 | 1716 | 57379 |
S/G/Y/R/B/O |
NT_022819 | AC134617 | 140073727 | 1 | chr4 | NT_022819 | AC093766 | 139895158 | 3 | 33656 | 1778 | 482 | 35916 |
S/G/Y/R/B/O |
NT_022819 | AC134617 | 140073727 | 1 |   |   | AC132151 | 140110410 | | 38214 | 1774 | 0 | 39988 |
S/G/Y/R/B/O |
NT_022819 | AC109927 | 140110410 | 3 | chr4 | NT_022819 | AC093602 | 140222774 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022819 | AC109927 | 140110410 | 3 |   |   | AC068096 | 140061725 | | 11818 | 0 | 8039 | 19857 |
S/G/Y/R/B/O |
NT_022819 | AC093602 | 140222774 | 3 | chr4 | NT_022819 | AC024032 | 140341608 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_022819 | AC093602 | 140222774 | 3 |   |   | AC068096 | 140341608 | | 90557 | 8524 | 6622 | 105703 |
S/G/Y/R/B/O |
NT_022819 | AC024032 | 140341608 | 3 | chr4 | NT_022819 | AC097376 | 140516647 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022819 | AC097376 | 140516647 | 3 | chr4 | NT_022819 | AC114743 | 140660042 | 3 | 0 | 0 | 1439 | 1439 |
S/G/Y/R/B/O |
NT_022819 | AC114743 | 140660042 | 3 | chr4 | NT_022819 | AC112236 | 140762968 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_022819 | AC114743 | 140660042 | 3 |   |   | AC016802 | 140660042 | | 51165 | 2710 | 3121 | 56996 |
S/G/Y/R/B/O |
NT_022819 | AC114743 | 140660042 | 3 |   |   | AC084771 | 140660042 | | 35173 | 17185 | 25980 | 78338 |
S/G/Y/R/B/O |
NT_022819 | AC114743 | 140660042 | 3 |   |   | AC112141 | 140516647 | | 28977 | 0 | 0 | 28977 |
S/G/Y/R/B/O |
NT_022819 | AC112236 | 140762968 | 3 | chr4 | NT_022819 | AC108053 | 140921583 | 3 | 0 | 0 | 1648 | 1648 |
S/G/Y/R/B/O |
NT_022819 | AC112236 | 140762968 | 3 |   |   | AC016802 | 140762968 | | 50836 | 6742 | 22954 | 80532 |
S/G/Y/R/B/O |
NT_022819 | AC112236 | 140762968 | 3 |   |   | AC019049 | 140762968 | | 120129 | 2826 | 11504 | 134459 |
S/G/Y/R/B/O |
NT_022819 | AC112236 | 140762968 | 3 |   |   | AC084771 | 140762968 | | 26376 | 2107 | 24851 | 53334 |
S/G/Y/R/B/O |
NT_022819 | AC112236 | 140762968 | 3 |   |   | AC112141 | 140921583 | | 48718 | 0 | 28050 | 76768 |
S/G/Y/R/B/O |
NT_022819 | AC108053 | 140921583 | 3 | chr4 | NT_022819 | AC097464 | 141013625 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_022819 | AC108053 | 140921583 | 3 |   |   | AC019049 | 140660042 | | 32770 | 0 | 10017 | 42787 |
S/G/Y/R/B/O |
NT_022819 | AC097464 | 141013625 | 3 | chr4 | NT_022819 | AC104798 | 141186037 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_022819 | AC097464 | 141013625 | 3 |   |   | AC040995 | 140762968 | | 36308 | 0 | 6334 | 42642 |
S/G/Y/R/B/O |
NT_022819 | AC104798 | 141186037 | 3 | chr4 | NT_022819 | AC131182 | 141316374 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022819 | AC104798 | 141186037 | 3 |   |   | AC040995 | 140921583 | | 78988 | 11837 | 29181 | 120006 |
S/G/Y/R/B/O |
NT_022819 | AC104798 | 141186037 | 3 |   |   | AC069030 | 140921583 | | 57772 | 5502 | 10371 | 73645 |
S/G/Y/R/B/O |
NT_022819 | AC131182 | 141316374 | 3 | chr4 | NT_022819 | AC133110 | 141413770 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_022819 | AC131182 | 141316374 | 3 |   |   | AC069030 | 141316374 | | 86796 | 10796 | 529 | 98121 |
S/G/Y/R/B/O |
NT_022819 | AC131182 | 141316374 | 3 |   |   | AC069030 | 141316374 | | 86796 | 10796 | 529 | 98121 |
S/G/Y/R/B/O |
NT_022819 | AC133110 | 141413770 | 3 |   |   |   |   |   |   |   |   |   |
S/G/Y/R/B/O |
NT_022819 | AC133110 | 141413770 | 3 |   |   | AC048378 | 141413770 | | 33219 | 0 | 0 | 33219 |
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