Chromosome 4 - Clone Overlaps

Chromosome 4 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_006111	NT_037622	NT_022865	NT_037623	NT_006081	NT_029956	NT_037624	NT_006051
NT_006307	NT_037625	NT_037626	NT_006342	NT_029958	NT_016407	NT_034693	NT_006344
NT_006316	NT_006189	NT_022794	NT_022751	NT_016297	NT_037627	NT_022782	NT_006238
NT_022853	NT_022778	NT_006216	NT_022760	NT_037628	NT_006109	NT_006204	NT_006397
NT_006383	NT_034703	NT_006365	NT_016354	NT_037629	NT_022846	NT_022819	NT_034706
NT_037630	NT_006127	NT_016606	NT_006258	NT_006171	NT_022776	NT_006198	NT_006257
NT_006118	NT_022792	NT_022800	NT_037631

NT_022792

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_022792	AC108205	179905023	3	chr4	NT_022792	AC097482	180037646	3	0	1997	0	1997
S/G/Y/R/B/O	NT_022792	AC108205	179905023	3			AC079294	179566191		63936	11161	2352	77449
S/G/Y/R/B/O	NT_022792	AC108205	179905023	3			AC080103	179566191		28411	2649	5384	36444
S/G/Y/R/B/O	NT_022792	AC097482	180037646	3	chr4	NT_022792	AC133531	180196409	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC097482	180037646	3			AC079008	180037646		147778	7434	0	155212
S/G/Y/R/B/O	NT_022792	AC097482	180037646	3			AC079294	180037646		24445	2258	2364	29067
S/G/Y/R/B/O	NT_022792	AC097482	180037646	3			AC080103	180037646		43574	2178	10982	56734
S/G/Y/R/B/O	NT_022792	AC097482	180037646	3			AC080110	180037646		52191	11943	8137	72271
S/G/Y/R/B/O	NT_022792	AC097482	180037646	3			AC125237	179905023		48858	0	10903	59761
S/G/Y/R/B/O	NT_022792	AC133531	180196409	3	chr4	NT_022792	AC109641	180200892	3	0	0	1717	1717
S/G/Y/R/B/O	NT_022792	AC109641	180200892	3	chr4	NT_022792	AC017087	180280300	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC109641	180200892	3			AC080110	180200892		28911	1688	4613	35212
S/G/Y/R/B/O	NT_022792	AC109641	180200892	3			AC113605	180200892		73464	0	0	73464
S/G/Y/R/B/O	NT_022792	AC109641	180200892	3			AC125237	180200892		41614	2125	4458	48197
S/G/Y/R/B/O	NT_022792	AC017087	180280300	3	chr4	NT_022792	AC095065	180450045	3	0	1998	0	1998
S/G/Y/R/B/O	NT_022792	AC017087	180280300	3			AC015834	180196409		24575	2996	1219	28790
S/G/Y/R/B/O	NT_022792	AC017087	180280300	3			AC113605	180450045		74516	0	0	74516
S/G/Y/R/B/O	NT_022792	AC095065	180450045	3	chr4	NT_022792	AC018710	180548513	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC095065	180450045	3			AC015834	180450045		54073	6489	14966	75528
S/G/Y/R/B/O	NT_022792	AC095065	180450045	3			AC021634	180280300		38025	0	0	38025
S/G/Y/R/B/O	NT_022792	AC018710	180548513	3	chr4	NT_022792	AC097479	180743749	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC018710	180548513	3			AC015834	180280300		19650	2245	6752	28647
S/G/Y/R/B/O	NT_022792	AC018710	180548513	3			AC021634	180280300		66975	0	13903	80878
S/G/Y/R/B/O	NT_022792	AC097479	180743749	3	chr4	NT_022792	AC021011	180879597	3	0	1999	0	1999
S/G/Y/R/B/O	NT_022792	AC021011	180879597	3	chr4	NT_022792	AC020551	180921555	3	0	0	1807	1807
S/G/Y/R/B/O	NT_022792	AC020551	180921555	3	chr4	NT_022792	AC082649	181039593	3	0	1996	0	1996
S/G/Y/R/B/O	NT_022792	AC082649	181039593	3	chr4	NT_022792	AC092537	181210740	3	0	1999	0	1999
S/G/Y/R/B/O	NT_022792	AC082649	181039593	3			AC015607	181039593		63882	0	0	63882
S/G/Y/R/B/O	NT_022792	AC082649	181039593	3			AC068622	180921555		25474	2767	0	28241
S/G/Y/R/B/O	NT_022792	AC092537	181210740	3	chr4	NT_022792	AC119070	181303185	3	0	1999	0	1999
S/G/Y/R/B/O	NT_022792	AC092537	181210740	3			AC015607	181210740		66961	0	0	66961
S/G/Y/R/B/O	NT_022792	AC092537	181210740	3			AC079084	181210740		24616	0	0	24616
S/G/Y/R/B/O	NT_022792	AC092537	181210740	3			AC096724	181039593		12632	9482	13236	35350
S/G/Y/R/B/O	NT_022792	AC119070	181303185	3	chr4	NT_022792	AC021193	181335646	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC119070	181303185	3			AC079084	181335646		22369	0	2463	24832
S/G/Y/R/B/O	NT_022792	AC021193	181335646	3	chr4	NT_022792	AC108169	181551631	3	0	1998	0	1998
S/G/Y/R/B/O	NT_022792	AC021193	181335646	3			AC079084	181210740		28084	0	13379	41463
S/G/Y/R/B/O	NT_022792	AC108169	181551631	3	chr4	NT_022792	AC096747	181661437	3	0	1999	0	1999
S/G/Y/R/B/O	NT_022792	AC108169	181551631	3			AC025022	181335646		108525	0	0	108525
S/G/Y/R/B/O	NT_022792	AC108169	181551631	3			AC110764	181661437		78862	0	0	78862
S/G/Y/R/B/O	NT_022792	AC096747	181661437	3	chr4	NT_022792	AC104826	181866226	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC096747	181661437	3			AC025022	181661437		79728	1819	0	81547
S/G/Y/R/B/O	NT_022792	AC096747	181661437	3			AC067900	181661437		29425	0	0	29425
S/G/Y/R/B/O	NT_022792	AC096747	181661437	3			AC110764	181551631		81567	0	0	81567
S/G/Y/R/B/O	NT_022792	AC104826	181866226	3	chr4	NT_022792	AC104660	182002830	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC104826	181866226	3			AC067900	181551631		124770	0	15341	140111
S/G/Y/R/B/O	NT_022792	AC104660	182002830	3	chr4	NT_022792	AC096590	182132106	3	0	1914	0	1914
S/G/Y/R/B/O	NT_022792	AC104660	182002830	3			AC084860	182002830		104012	0	0	104012
S/G/Y/R/B/O	NT_022792	AC104660	182002830	3			AC105382	181866226		13187	14314	19867	47368
S/G/Y/R/B/O	NT_022792	AC096590	182132106	3	chr4	NT_022792	AC104803	182312665	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC096590	182132106	3			AC008600	181866226		146762	0	0	146762
S/G/Y/R/B/O	NT_022792	AC096590	182132106	3			AC008657	181866226		75514	0	0	75514
S/G/Y/R/B/O	NT_022792	AC096590	182132106	3			AC021539	181866226		90234	0	0	90234
S/G/Y/R/B/O	NT_022792	AC096590	182132106	3			AC105382	182312665		42109	9864	16835	68808
S/G/Y/R/B/O	NT_022792	AC104803	182312665	3	chr4	NT_022792	AC108221	182413588	3	0	1997	0	1997
S/G/Y/R/B/O	NT_022792	AC104803	182312665	3			AC008465	182312665		102593	0	0	102593
S/G/Y/R/B/O	NT_022792	AC104803	182312665	3			AC021539	182312665		102923	0	0	102923
S/G/Y/R/B/O	NT_022792	AC104803	182312665	3			AC090803	182312665		22422	0	0	22422
S/G/Y/R/B/O	NT_022792	AC108221	182413588	3	chr4	NT_022792	AC097489	182471193	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC108221	182413588	3			AC090803	182413588		54227	4376	0	58603
S/G/Y/R/B/O	NT_022792	AC097489	182471193	3	chr4	NT_022792	AC108141	182621232	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC097489	182471193	3			AC090803	182312665		29280	0	54652	83932
S/G/Y/R/B/O	NT_022792	AC108141	182621232	3	chr4	NT_022792	AC093699	182629405	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC093699	182629405	3	chr4	NT_022792	AC019235	182764303	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC093699	182629405	3			AL079351	182621232		43903	0	38237	82140
S/G/Y/R/B/O	NT_022792	AC019235	182764303	3	chr4	NT_022792	AC093757	182958983	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC019235	182764303	3			AL079351	182958983		63262	0	0	63262
S/G/Y/R/B/O	NT_022792	AC093757	182958983	3	chr4	NT_022792	AC093736	182995395	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC093736	182995395	3	chr4	NT_022792	AC093840	183112661	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC093840	183112661	3	chr4	NT_022792	AC084741	183284475	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC093840	183112661	3			AC016241	183112661		70549	5523	0	76072
S/G/Y/R/B/O	NT_022792	AC084741	183284475	3	chr4	NT_022792	AC093669	183428618	3	0	1996	0	1996
S/G/Y/R/B/O	NT_022792	AC084741	183284475	3			AC016241	182995395		69981	2730	0	72711
S/G/Y/R/B/O	NT_022792	AC093669	183428618	3	chr4	NT_022792	AC098864	183522738	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC093669	183428618	3			AC016316	183112661		89801	0	0	89801
S/G/Y/R/B/O	NT_022792	AC098864	183522738	3	chr4	NT_022792	AC108142	183737018	3	0	1996	0	1996
S/G/Y/R/B/O	NT_022792	AC098864	183522738	3			AC016316	183284475		59376	0	224	59600
S/G/Y/R/B/O	NT_022792	AC108142	183737018	3	chr4	NT_022792	AC131943	183797642	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC131943	183797642	3	chr4	NT_022792	AC093601	183931219	3	0	1992	0	1992
S/G/Y/R/B/O	NT_022792	AC131943	183797642	3			AC067731	183797642		30262	0	0	30262
S/G/Y/R/B/O	NT_022792	AC093601	183931219	3	chr4	NT_022792	AC109353	184047348	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC093601	183931219	3			AC067731	183737018		71288	1429	16259	88976
S/G/Y/R/B/O	NT_022792	AC109353	184047348	3	chr4	NT_022792	AC105288	184099875	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC109353	184047348	3			AC067731	183797642		12031	0	0	12031
S/G/Y/R/B/O	NT_022792	AC105288	184099875	3	chr4	NT_022792	AC079226	184240790	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC079226	184240790	3	chr4	NT_022792	AC114798	184422822	1	99890	0	0	99890
S/G/Y/R/B/O	NT_022792	AC114798	184422822	1	chr4	NT_022792	AC079766	184452237	3	70676	0	0	70676
S/G/Y/R/B/O	NT_022792	AC079766	184452237	3	chr4	NT_022792	AC019193	184582111	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC079766	184452237	3			AC080070	184452237		22437	0	20209	42646
S/G/Y/R/B/O	NT_022792	AC019193	184582111	3	chr4	NT_022792	AC099397	184757831	3	0	1987	0	1987
S/G/Y/R/B/O	NT_022792	AC019193	184582111	3			AC080070	184422822		35483	5067	9336	49886
S/G/Y/R/B/O	NT_022792	AC099397	184757831	3	chr4	NT_022792	AC093844	184808707	3	46875	0	0	46875
S/G/Y/R/B/O	NT_022792	AC093844	184808707	3	chr4	NT_022792	AC112698	185004751	3	0	1997	0	1997
S/G/Y/R/B/O	NT_022792	AC112698	185004751	3	chr4	NT_022792	AC107214	185066086	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC112698	185004751	3			AC114911	184808707		39235	0	15894	55129
S/G/Y/R/B/O	NT_022792	AC107214	185066086	3	chr4	NT_022792	AC108477	185243220	3	21717	0	0	21717
S/G/Y/R/B/O	NT_022792	AC108477	185243220	3	chr4	NT_022792	AC105311	185391733	3	0	0	1897	1897
S/G/Y/R/B/O	NT_022792	AC105311	185391733	3	chr4	NT_022792	AC074194	185474285	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC074194	185474285	3	chr4	NT_022792	AC107222	185649558	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC107222	185649558	3	chr4	NT_022792	AC079080	185759108	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC107222	185649558	3			AL590713	185759108		42231	0	0	42231
S/G/Y/R/B/O	NT_022792	AC079080	185759108	3	chr4	NT_022792	AC103540	185918755	3	0	2000	0	2000
S/G/Y/R/B/O	NT_022792	AC079080	185759108	3			AC040939	185759108		58077	2925	11254	72256
S/G/Y/R/B/O	NT_022792	AC079080	185759108	3			AL590713	185649558		119185	0	0	119185
S/G/Y/R/B/O	NT_022792	AC103540	185918755	3	chr4	NT_022792	AC099343	185988799	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC103540	185918755	3			AC040939	185649558		40420	0	0	40420
S/G/Y/R/B/O	NT_022792	AC103540	185918755	3			AL365358	185988799		21719	5352	8070	35141
S/G/Y/R/B/O	NT_022792	AC099343	185988799	3	chr4	NT_022792	AC073932	186183015	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC099343	185988799	3			AC084049	185988799		58885	2443	8702	70030
S/G/Y/R/B/O	NT_022792	AC099343	185988799	3			AL365358	185918755		56327	7860	0	64187
S/G/Y/R/B/O	NT_022792	AC073932	186183015	3	chr4	NT_022792	AC079257	186229232	3	0	0	1633	1633
S/G/Y/R/B/O	NT_022792	AC073932	186183015	3			AC060790	185918755		39203	0	0	39203
S/G/Y/R/B/O	NT_022792	AC079257	186229232	3	chr4	NT_022792	AC084871	186360636	3	0	0	1660	1660
S/G/Y/R/B/O	NT_022792	AC079257	186229232	3			AC024441	186229232		15988	2982	5679	24649
S/G/Y/R/B/O	NT_022792	AC084871	186360636	3	chr4	NT_022792	AC112243	186562362	3	0	1994	0	1994
S/G/Y/R/B/O	NT_022792	AC084871	186360636	3			AC024441	186360636		70923	23315	11253	105491
S/G/Y/R/B/O	NT_022792	AC084871	186360636	3			AC060790	186360636		38777	0	0	38777
S/G/Y/R/B/O	NT_022792	AC084871	186360636	3			AC068307	186360636		80425	0	11960	92385
S/G/Y/R/B/O	NT_022792	AC112243	186562362	3	chr4	NT_022792	AC093824	186601295	3	0	0	1753	1753
S/G/Y/R/B/O	NT_022792	AC093824	186601295	3	chr4	NT_022792	AC112237	186750557	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC112237	186750557	3	chr4	NT_022792	AC093592	186752551	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC093592	186752551	3	chr4	NT_022792	AC073344	186823523	3	144227	0	0	144227
S/G/Y/R/B/O	NT_022792	AC093592	186752551	3			AC016032	186601295		31725	0	2187	33912
S/G/Y/R/B/O	NT_022792	AC073344	186823523	3	chr4	NT_022792	AC112722	186983088	3	0	1999	0	1999
S/G/Y/R/B/O	NT_022792	AC073344	186823523	3			AC016032	186750557		62438	5518	2182	70138
S/G/Y/R/B/O	NT_022792	AC112722	186983088	3	chr4	NT_022792	AC106897	186995084	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC112722	186983088	3			AC016032	186983088		13843	0	59	13902
S/G/Y/R/B/O	NT_022792	AC106897	186995084	3	chr4	NT_022792	AC093797	187154656	3	58994	0	0	58994
S/G/Y/R/B/O	NT_022792	AC106897	186995084	3			AC016032	186995084		54487	4310	0	58797
S/G/Y/R/B/O	NT_022792	AC093797	187154656	3	chr4	NT_022792	AC108472	187265357	3	0	1992	0	1992
S/G/Y/R/B/O	NT_022792	AC108472	187265357	3	chr4	NT_022792	AC104805	187299983	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC104805	187299983	3	chr4	NT_022792	AC096659	187460330	3	0	0	1786	1786
S/G/Y/R/B/O	NT_022792	AC104805	187299983	3			AC026149	187299983		147240	4867	8298	160405
S/G/Y/R/B/O	NT_022792	AC104805	187299983	3			AC026149	187299983		147240	4867	8298	160405
S/G/Y/R/B/O	NT_022792	AC096659	187460330	3	chr4	NT_022792	AC104070	187614970	3	0	1980	0	1980
S/G/Y/R/B/O	NT_022792	AC096659	187460330	3			AC026149	187265357		13927	0	0	13927
S/G/Y/R/B/O	NT_022792	AC104070	187614970	3	chr4	NT_022792	AC110771	187736261	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC110771	187736261	3	chr4	NT_022792	AC109517	187901690	3	0	1992	0	1992
S/G/Y/R/B/O	NT_022792	AC110771	187736261	3			AC012525	187460330		14833	0	14042	28875
S/G/Y/R/B/O	NT_022792	AC109517	187901690	3	chr4	NT_022792	AC018709	187943265	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC109517	187901690	3			AC012525	187901690		18930	0	0	18930
S/G/Y/R/B/O	NT_022792	AC018709	187943265	3	chr4	NT_022792	AC110761	188102278	3	0	1987	0	1987
S/G/Y/R/B/O	NT_022792	AC018709	187943265	3			AC012525	187736261		21361	0	0	21361
S/G/Y/R/B/O	NT_022792	AC110761	188102278	3	chr4	NT_022792	AC107050	188253736	3	0	694	0	694
S/G/Y/R/B/O	NT_022792	AC110761	188102278	3			AC024664	187943265		55333	1823	5217	62373
S/G/Y/R/B/O	NT_022792	AC110761	188102278	3			AC058794	187943265		25924	2988	1362	30274
S/G/Y/R/B/O	NT_022792	AC107050	188253736	3	chr4	NT_022792	AC108865	188420741	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC107050	188253736	3			AC024664	188253736		60251	0	9990	70241
S/G/Y/R/B/O	NT_022792	AC107050	188253736	3			AC040966	188253736		111041	12543	26818	150402
S/G/Y/R/B/O	NT_022792	AC107050	188253736	3			AC058794	188253736		124113	7677	1389	133179
S/G/Y/R/B/O	NT_022792	AC108865	188420741	3	chr4	NT_022792	AC110772	188521474	3	62135	0	0	62135
S/G/Y/R/B/O	NT_022792	AC110772	188521474	3	chr4	NT_022792	AC108474	188651144	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC108474	188651144	3	chr4	NT_022792	AC108046	188670641	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC108046	188670641	3	chr4	NT_022792	AC112234	188846118	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC108046	188670641	3			AC079012	188521474		52441	11879	5036	69356
S/G/Y/R/B/O	NT_022792	AC112234	188846118	3	chr4	NT_022792	AC097652	188854222	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC097652	188854222	3	chr4	NT_022792	AC093763	188967172	3	0	2000	0	2000
S/G/Y/R/B/O	NT_022792	AC097652	188854222	3			AC079012	188854222		50720	2928	23261	76909
S/G/Y/R/B/O	NT_022792	AC093763	188967172	3	chr4	NT_022792	AC097521	189119846	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC093763	188967172	3			AC079092	188846118		66369	4693	29237	100299
S/G/Y/R/B/O	NT_022792	AC097521	189119846	3	chr4	NT_022792	AC113157	189304575	3	2000	0	0	2000
S/G/Y/R/B/O	NT_022792	AC097521	189119846	3			AC079092	188854222		40517	0	0	40517
S/G/Y/R/B/O	NT_022792	AC113157	189304575	3	chr4	NT_022792	AC115540	189331001	3	0	0	0	0
S/G/Y/R/B/O	NT_022792	AC115540	189331001	3	chr4	NT_022792	AC108073	189496484	3	0	1999	0	1999
S/G/Y/R/B/O	NT_022792	AC108073	189496484	3