|
|
Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
| |
|
|
|
|
Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_006383 | AP001964 | 102064677 | 3 | chr4 | NT_006383 | AP001870 | 102159416 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AP001964 | 102064677 | 3 |   |   | AC025852 | 101825332 | | 28143 | 6766 | 5427 | 40336 |
S/G/Y/R/B/O |
NT_006383 | AP001870 | 102159416 | 3 | chr4 | NT_006383 | AC092671 | 102267985 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AP001870 | 102159416 | 3 |   |   | AC025852 | 101825332 | | 32165 | 2471 | 2271 | 36907 |
S/G/Y/R/B/O |
NT_006383 | AP001870 | 102159416 | 3 |   |   | AP001965 | 101825332 | | 55691 | 0 | 0 | 55691 |
S/G/Y/R/B/O |
NT_006383 | AP001870 | 102159416 | 3 |   |   | AP002334 | 101825332 | | 13152 | 0 | 11967 | 25119 |
S/G/Y/R/B/O |
NT_006383 | AC092671 | 102267985 | 3 | chr4 | NT_006383 | AP001939 | 102393997 | 3 | 28450 | 0 | 0 | 28450 |
S/G/Y/R/B/O |
NT_006383 | AC092671 | 102267985 | 3 |   |   | AC027626 | 101825332 | | 49655 | 4469 | 3476 | 57600 |
S/G/Y/R/B/O |
NT_006383 | AC092671 | 102267985 | 3 |   |   | AC090417 | 101825332 | | 72311 | 12989 | 1589 | 86889 |
S/G/Y/R/B/O |
NT_006383 | AP001939 | 102393997 | 3 | chr4 | NT_006383 | AP001816 | 102512631 | 3 | 45041 | 0 | 0 | 45041 |
S/G/Y/R/B/O |
NT_006383 | AP001939 | 102393997 | 3 |   |   | AC013785 | 102393997 | | 43755 | 0 | 0 | 43755 |
S/G/Y/R/B/O |
NT_006383 | AP001939 | 102393997 | 3 |   |   | AC027626 | 102393997 | | 71134 | 3817 | 28094 | 103045 |
S/G/Y/R/B/O |
NT_006383 | AP001939 | 102393997 | 3 |   |   | AC090417 | 102393997 | | 11003 | 4332 | 819 | 16154 |
S/G/Y/R/B/O |
NT_006383 | AP001939 | 102393997 | 3 |   |   | AC093653 | 102267985 | | 68628 | 0 | 0 | 68628 |
S/G/Y/R/B/O |
NT_006383 | AP001939 | 102393997 | 3 |   |   | AC093687 | 102267985 | | 10197 | 0 | 0 | 10197 |
S/G/Y/R/B/O |
NT_006383 | AP001939 | 102393997 | 3 |   |   | AP001963 | 102512631 | | 15693 | 2046 | 0 | 17739 |
S/G/Y/R/B/O |
NT_006383 | AP001939 | 102393997 | 3 |   |   | AP002017 | 102512631 | | 43851 | 0 | 0 | 43851 |
S/G/Y/R/B/O |
NT_006383 | AP001816 | 102512631 | 3 | chr4 | NT_006383 | AC091601 | 102590890 | 3 | 0 | 0 | 1857 | 1857 |
S/G/Y/R/B/O |
NT_006383 | AP001816 | 102512631 | 3 |   |   | AC013785 | 102512631 | | 112760 | 0 | 0 | 112760 |
S/G/Y/R/B/O |
NT_006383 | AP001816 | 102512631 | 3 |   |   | AC093687 | 102590890 | | 17154 | 0 | 95311 | 112465 |
S/G/Y/R/B/O |
NT_006383 | AP001816 | 102512631 | 3 |   |   | AP001963 | 102393997 | | 81215 | 2043 | 0 | 83258 |
S/G/Y/R/B/O |
NT_006383 | AP001816 | 102512631 | 3 |   |   | AP002017 | 102393997 | | 69347 | 0 | 825 | 70172 |
S/G/Y/R/B/O |
NT_006383 | AC091601 | 102590890 | 3 | chr4 | NT_006383 | AC083851 | 102676453 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_006383 | AC091601 | 102590890 | 3 |   |   | AC009794 | 102393997 | | 36478 | 7698 | 1261 | 45437 |
S/G/Y/R/B/O |
NT_006383 | AC083851 | 102676453 | 3 | chr4 | NT_006383 | AC084277 | 102798360 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AC083851 | 102676453 | 3 |   |   | AC009794 | 102512631 | | 44330 | 6769 | 12601 | 63700 |
S/G/Y/R/B/O |
NT_006383 | AC084277 | 102798360 | 3 | chr4 | NT_006383 | AC093694 | 102947065 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AC093694 | 102947065 | 3 | chr4 | NT_006383 | AC109928 | 103021128 | 3 | 86321 | 0 | 0 | 86321 |
S/G/Y/R/B/O |
NT_006383 | AC093694 | 102947065 | 3 |   |   | AP002738 | 103021128 | | 71614 | 1753 | 29894 | 103261 |
S/G/Y/R/B/O |
NT_006383 | AC109928 | 103021128 | 3 | chr4 | NT_006383 | AP002075 | 103129496 | 3 | 0 | 1993 | 0 | 1993 |
S/G/Y/R/B/O |
NT_006383 | AC109928 | 103021128 | 3 |   |   | AP002738 | 103129496 | | 59776 | 0 | 14769 | 74545 |
S/G/Y/R/B/O |
NT_006383 | AP002075 | 103129496 | 3 | chr4 | NT_006383 | AC095062 | 103246479 | 3 | 0 | 1993 | 0 | 1993 |
S/G/Y/R/B/O |
NT_006383 | AP002075 | 103129496 | 3 |   |   | AC023853 | 103129496 | | 16072 | 0 | 1448 | 17520 |
S/G/Y/R/B/O |
NT_006383 | AP002075 | 103129496 | 3 |   |   | AP001817 | 103021128 | | 58830 | 0 | 0 | 58830 |
S/G/Y/R/B/O |
NT_006383 | AC095062 | 103246479 | 3 | chr4 | NT_006383 | AC104693 | 103317709 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006383 | AC095062 | 103246479 | 3 |   |   | AC023853 | 103021128 | | 63242 | 0 | 0 | 63242 |
S/G/Y/R/B/O |
NT_006383 | AC095062 | 103246479 | 3 |   |   | AP001817 | 103317709 | | 36899 | 0 | 0 | 36899 |
S/G/Y/R/B/O |
NT_006383 | AC104693 | 103317709 | 3 | chr4 | NT_006383 | AP002022 | 103331435 | 3 | 0 | 1990 | 0 | 1990 |
S/G/Y/R/B/O |
NT_006383 | AP002022 | 103331435 | 3 | chr4 | NT_006383 | AP002023 | 103503375 | 3 | 0 | 0 | 84098 | 84098 |
S/G/Y/R/B/O |
NT_006383 | AP002023 | 103503375 | 3 | chr4 | NT_006383 | AC098487 | 103545226 | 3 | 20724 | 0 | 0 | 20724 |
S/G/Y/R/B/O |
NT_006383 | AC098487 | 103545226 | 3 | chr4 | NT_006383 | AF213884 | 103688344 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AC098487 | 103545226 | 3 |   |   | AP002019 | 103331435 | | 47439 | 0 | 0 | 47439 |
S/G/Y/R/B/O |
NT_006383 | AF213884 | 103688344 | 3 | chr4 | NT_006383 | AC021120 | 103855182 | 3 | 159019 | 0 | 0 | 159019 |
S/G/Y/R/B/O |
NT_006383 | AF213884 | 103688344 | 3 |   |   | AP002019 | 103890040 | | 58109 | 0 | 0 | 58109 |
S/G/Y/R/B/O |
NT_006383 | AC021120 | 103855182 | 3 | chr4 | NT_006383 | AF224669 | 103890040 | 3 | 34924 | 0 | 0 | 34924 |
S/G/Y/R/B/O |
NT_006383 | AC021120 | 103855182 | 3 |   |   | AP002019 | 103890040 | | 29695 | 0 | 0 | 29695 |
S/G/Y/R/B/O |
NT_006383 | AF224669 | 103890040 | 3 | chr4 | NT_006383 | AC018797 | 104122004 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AF224669 | 103890040 | 3 |   |   | AC024629 | 103855182 | | 77438 | 7401 | 1023 | 85862 |
S/G/Y/R/B/O |
NT_006383 | AF224669 | 103890040 | 3 |   |   | AC080124 | 103855182 | | 72335 | 0 | 0 | 72335 |
S/G/Y/R/B/O |
NT_006383 | AF224669 | 103890040 | 3 |   |   | AP001860 | 103688344 | | 23818 | 0 | 0 | 23818 |
S/G/Y/R/B/O |
NT_006383 | AC018797 | 104122004 | 3 | chr4 | NT_006383 | AC083826 | 104124356 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006383 | AC018797 | 104122004 | 3 |   |   | AC024629 | 103688344 | | 52368 | 4846 | 1028 | 58242 |
S/G/Y/R/B/O |
NT_006383 | AC018797 | 104122004 | 3 |   |   | AC080124 | 103688344 | | 74870 | 0 | 0 | 74870 |
S/G/Y/R/B/O |
NT_006383 | AC018797 | 104122004 | 3 |   |   | AP001860 | 104124356 | | 26207 | 0 | 0 | 26207 |
S/G/Y/R/B/O |
NT_006383 | AC083826 | 104124356 | 3 | chr4 | NT_006383 | AC097485 | 104251596 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006383 | AC097485 | 104251596 | 3 | chr4 | NT_006383 | AC079919 | 104332288 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006383 | AC079919 | 104332288 | 3 | chr4 | NT_006383 | AC096671 | 104498599 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AC079919 | 104332288 | 3 |   |   | AC084074 | 104124356 | | 65236 | 0 | 0 | 65236 |
S/G/Y/R/B/O |
NT_006383 | AC096671 | 104498599 | 3 | chr4 | NT_006383 | AC113609 | 104522943 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006383 | AC113609 | 104522943 | 3 | chr4 | NT_006383 | AC096742 | 104604824 | 3 | 0 | 2000 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006383 | AC113609 | 104522943 | 3 |   |   | AC067792 | 104522943 | | 25960 | 9474 | 28932 | 64366 |
S/G/Y/R/B/O |
NT_006383 | AC096742 | 104604824 | 3 | chr4 | NT_006383 | AC105460 | 104716815 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AC096742 | 104604824 | 3 |   |   | AC067792 | 104604824 | | 23083 | 4208 | 1908 | 29199 |
S/G/Y/R/B/O |
NT_006383 | AC096742 | 104604824 | 3 |   |   | AP001938 | 104522943 | | 30553 | 0 | 4994 | 35547 |
S/G/Y/R/B/O |
NT_006383 | AC105460 | 104716815 | 3 | chr4 | NT_006383 | AC004065 | 104900570 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AC105460 | 104716815 | 3 |   |   | AL133554 | 104522943 | | 44945 | 0 | 0 | 44945 |
S/G/Y/R/B/O |
NT_006383 | AC105460 | 104716815 | 3 |   |   | AP002739 | 104522943 | | 17601 | 0 | 19190 | 36791 |
S/G/Y/R/B/O |
NT_006383 | AC004065 | 104900570 | 3 | chr4 | NT_006383 | AC004047 | 105062282 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AC004065 | 104900570 | 3 |   |   | AC112244 | 104522943 | | 95657 | 0 | 0 | 95657 |
S/G/Y/R/B/O |
NT_006383 | AC004047 | 105062282 | 3 | chr4 | NT_006383 | AC074349 | 105168233 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AC074349 | 105168233 | 3 | chr4 | NT_006383 | AC098678 | 105288889 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006383 | AC098678 | 105288889 | 3 | chr4 | NT_006383 | AC074088 | 105380066 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AC074088 | 105380066 | 3 | chr4 | NT_006383 | AC004052 | 105447529 | 3 | 0 | 0 | 1813 | 1813 |
S/G/Y/R/B/O |
NT_006383 | AC004052 | 105447529 | 3 | chr4 | NT_006383 | AC110805 | 105602025 | 3 | 0 | 0 | 1827 | 1827 |
S/G/Y/R/B/O |
NT_006383 | AC004052 | 105447529 | 3 |   |   | AC114758 | 105602025 | | 56446 | 0 | 17281 | 73727 |
S/G/Y/R/B/O |
NT_006383 | AC110805 | 105602025 | 3 | chr4 | NT_006383 | AC093628 | 105679985 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006383 | AC110805 | 105602025 | 3 |   |   | AC107420 | 105679985 | | 29547 | 4208 | 28712 | 62467 |
S/G/Y/R/B/O |
NT_006383 | AC110805 | 105602025 | 3 |   |   | AC114758 | 105679985 | | 56387 | 0 | 0 | 56387 |
S/G/Y/R/B/O |
NT_006383 | AC110805 | 105602025 | 3 |   |   | AP001953 | 105679985 | | 39641 | 0 | 35506 | 75147 |
S/G/Y/R/B/O |
NT_006383 | AC093628 | 105679985 | 3 | chr4 | NT_006383 | AC004063 | 105812094 | 3 | 95151 | 0 | 0 | 95151 |
S/G/Y/R/B/O |
NT_006383 | AC093628 | 105679985 | 3 |   |   | AC107420 | 105812094 | | 38936 | 4176 | 2117 | 45229 |
S/G/Y/R/B/O |
NT_006383 | AC093628 | 105679985 | 3 |   |   | AP001953 | 105602025 | | 16584 | 0 | 23754 | 40338 |
S/G/Y/R/B/O |
NT_006383 | AC004063 | 105812094 | 3 | chr4 | NT_006383 | AC093918 | 105919554 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AC093918 | 105919554 | 3 | chr4 | NT_006383 | AC004053 | 105923439 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_006383 | AC004053 | 105923439 | 3 | chr4 | NT_006383 | AC105918 | 106088339 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006383 | AC004053 | 105923439 | 3 |   |   | AC084769 | 105679985 | | 44128 | 9254 | 17579 | 70961 |
S/G/Y/R/B/O |
NT_006383 | AC105918 | 106088339 | 3 | chr4 | NT_006383 | AC096577 | 106140177 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_006383 | AC105918 | 106088339 | 3 |   |   | AC084769 | 105923439 | | 29902 | 6136 | 7384 | 43422 |
S/G/Y/R/B/O |
NT_006383 | AC096577 | 106140177 | 3 | chr4 | NT_006383 | AC004069 | 106294272 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_006383 | AC096577 | 106140177 | 3 |   |   | AC084769 | 106294272 | | 10162 | 0 | 0 | 10162 |
S/G/Y/R/B/O |
NT_006383 | AC004069 | 106294272 | 3 | chr4 | NT_006383 | AC026029 | 106427923 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_006383 | AC026029 | 106427923 | 3 | chr4 | NT_006383 | AC106888 | 106598990 | 3 | 0 | 1897 | 0 | 1897 |
S/G/Y/R/B/O |
NT_006383 | AC026029 | 106427923 | 3 |   |   | AC084835 | 106294272 | | 55360 | 3907 | 5754 | 65021 |
S/G/Y/R/B/O |
NT_006383 | AC106888 | 106598990 | 3 | chr4 | NT_006383 | AC004066 | 106687517 | 3 | 8733 | 0 | 0 | 8733 |
S/G/Y/R/B/O |
NT_006383 | AC106888 | 106598990 | 3 |   |   | AC080028 | 106427923 | | 86890 | 0 | 1789 | 88679 |
S/G/Y/R/B/O |
NT_006383 | AC106888 | 106598990 | 3 |   |   | AC084835 | 106427923 | | 34941 | 9023 | 5058 | 49022 |
S/G/Y/R/B/O |
NT_006383 | AC106888 | 106598990 | 3 |   |   | AC093696 | 106427923 | | 38039 | 0 | 8969 | 47008 |
S/G/Y/R/B/O |
NT_006383 | AC106888 | 106598990 | 3 |   |   | AC108936 | 106427923 | | 84362 | 0 | 0 | 84362 |
S/G/Y/R/B/O |
NT_006383 | AC106888 | 106598990 | 3 |   |   | AP001946 | 106427923 | | 17332 | 0 | 0 | 17332 |
S/G/Y/R/B/O |
NT_006383 | AC106888 | 106598990 | 3 |   |   | AP001956 | 106427923 | | 23718 | 0 | 42356 | 66074 |
S/G/Y/R/B/O |
NT_006383 | AC004066 | 106687517 | 3 | chr4 | NT_006383 | AC105391 | 106818627 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_006383 | AC004066 | 106687517 | 3 |   |   | AC093696 | 106427923 | | 32925 | 13787 | 38610 | 85322 |
S/G/Y/R/B/O |
NT_006383 | AC004066 | 106687517 | 3 |   |   | AP001956 | 106598990 | | 46681 | 0 | 0 | 46681 |
S/G/Y/R/B/O |
NT_006383 | AC105391 | 106818627 | 3 | chr4 | NT_006383 | AC008243 | 106960125 | 3 | 0 | 1985 | 0 | 1985 |
S/G/Y/R/B/O |
NT_006383 | AC105391 | 106818627 | 3 |   |   | AP002335 | 106960125 | | 43455 | 0 | 0 | 43455 |
S/G/Y/R/B/O |
NT_006383 | AC008243 | 106960125 | 3 | chr4 | NT_006383 | AC093782 | 107119646 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_006383 | AC093782 | 107119646 | 3 | chr4 | NT_006383 | AC109361 | 107154588 | 3 | 0 | 1994 | 0 | 1994 |
S/G/Y/R/B/O |
NT_006383 | AC109361 | 107154588 | 3 | chr4 | NT_006383 | AP001820 | 107286337 | 3 | 84404 | 0 | 0 | 84404 |
S/G/Y/R/B/O |
NT_006383 | AP001820 | 107286337 | 3 |   |   |   |   |   |   |   |   |   |
| |
|
|
|